LOC110486738 (LOC106606773)


Basic Information

Item Value
gene id LOC110486738
gene name LOC106606773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51405257 ~ 51412417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558560.2
TGGAATACGCTGGCCCCACCAGTCTTGTGACTTTAAATGATCAAATGATTATTGCATCACCCTCATCGAAATGTTATTGGCTGTATAAGGCAGACCCCCTTGCATCATCACTCTGACGTGCCAATCTCCACTCTTTCCAACAACACTGATCTCAGAACACTGCGTCAATGAAATGGGACTATCACTCACTCTCTGGTCTTCCTTAAAAGATATCAGGTGGATAGCTGTGATTTATCATGCAGTGGGAGGTGTTTATTTGCATATCCACTACTCAAGCAGATGGAAGCCCTATGGACATATTCATTTCCTTTAAGCATTAAAGTTTAACTGAGGTAGACCCCAGAGAACCCTGGCAACAGCGGTGGGAGGAGCATAGTAACCTTATCTGACCCTGCTCCTGCTCCAGCCCTGTTTTAAAAACCTGACAGGCAGAATGACATCCAGGCACCGCGAAGACAATCTCTCTTGCCCCCTCTGTGGAATTATCTTCAACCAGCCCGTTGTGCTCTCCTGCAGACACAGGTTCTGTAAAACATGCCTTCAAGACAGCTGGAGTACCCAGGACAGTGAGGACGACTGCCACTTCTGCCCTCTATGCTGGAGACGTTCCTCCATGAATGAGATTGTGGTAAACACCATTCTGGAGAAGACCTGCGAGTCCTTCAGGAAGGAGATGAGCAGCAGGAATAACCCTATGGGGTGTAAGGAACACGGAGAGACGCTCTCACTCTTCTGTCTGGACGATCTGCAGCCCATCTGTGTTGCGTGCCAGACGTCGGCGGTACACAAGGGGCACAGGCTCTACCCCATTGGGGAAGGTGCACACGACTGTAAGGAGGAACTCAAGACTGCATTGACCCCATTGAAGGAGAAGCTGCAGCTGTTCAAGAAGGCTATGGTCGTCTGTGATCAAACGGCAGAGCACATCAAGAACCAGGTTGAGCATACTGAAAGGCAGATAAAGGATGAGTTTGAAACCCTTCACCAGTTCCTGAGAGATGAGGAGGCAGCCAGATTGAATGCTCTGAAGGCAGAGGAGGATCAGAAGAGTCTGCTTCTAAAGGAGAAGATTGAGGAGATGTCCAACGAACTGACGTCCCTCTCAAACACCATCAGAACCGTAGAGCAAGAGATGAGGTCTCAGGACATCCCATTCTTACAGAACTACAAGGATATCATCAAGAGAACCTGGCATATGCCGCTGGATCCAAAGATTATTCCTGGAACTCTGATTGATGTTGCAAAGCACCTGGGTTCTGTAAAGTTCAACATCTGGGACAAGATGAAGAGCATCATTCAATATActcCTGTGACTCTGGACCCCAACACAGCTGCTAGCTGCTTCATCCTGTCTGAGGATCTGACTGTGGTCCAGTGCTGCTCGCAGGTCTTCAAGCTCCCAAACAACCCCGAGAGGTTTGACATCAGTGCTGAGTTACTGGGCTCCGAGGGGTTCTGCTCTGGCCGCCACAGCTGGGAGGTAGAGGTAAAGGCTAACACATACTGGGTGGTAGGTGTGGCCAGCGAGTCTATCAACAGGAAGGGCAAGCATGTGCTGACGCCAGCCGAGGGCTTCTGGACTATACGCTTCCGCAATGGCGAGCACAAGGCGTGCACGGCACCGTGGGCGCCCTTGACCATGATGAGGAAGGAGCCTCAGGTCATCAGGGTGGTGTTGGACATGGACAGGGGCAAGGTGACCTTCTTTGACCCCCGGGAGAGGACGCCCCTCTATACGTTTACAGACCTCATCTCACCCCGGGTGTTTCCTTACTTCTGCACTGCCTGTAAGGAACACCCACTGAGACTGCTGCCCGTCAGGCTGTCTGCTGCTGTGGTGCTCTAGAGGGCTCCATGGGGGTTCATTACTAACAAGCAGTGGAGGCTCAATTACTTACAGACAGATCCAGTTGAGTTTACTAGTCCTAGATGATGAAGGCTGATCACTTGGGACCGTCTGGAATAAAGCATGTAATGGTCTTA
>XM_036941444.1
TAGCTCTGTGGGAGAATGGAGGCCAAAGCTTCCACTCTCCTGGAGGATGATGATCTCTCCTGTGCTGTATGTAGAAAGGTCTTCTCTGTTCCCGTGGTTCTCAGCTGTCATACCTGTGGCTGTAGCTTCTGCAATATCTGTCTGGATGAGTTCTGGGAGCAGCAGGGTTCTGAAATATGTCCTCTGTGCATTATCGACTACCCTGGAGGTCCTCAGAGAACGTGTGAGGAACACAGGGACAAACTGAAGATCTTCTGTGTCACAGACCTGCAGCCTATCTGTGATTATCATTGGTCAGTTGACCATAAGGATCACAAAGTGTACCCAATAGCTGAGGCAGTGGTGTACTGCAAGGAGGAACTCAAGACTGCATTGACCCCATTGAAGGAGAAGCTGCAGCTGTTCAAGAAGGCTATGGTCGTCTGTGATCAAACGGCAGAGCACATCAAGAACCAGGTTGAGCATACTGAAAGGCAGATAAAGGATGAGTTTGAAACCCTTCACCAGTTCCTGAGAGATGAGGAGGCAGCCAGATTGAATGCTCTGAAGGCAGAGGAGGATCAGAAGAGTCTGCTTCTAAAGGAGAAGATTGAGGAGATGTCCAACGAACTGACGTCCCTCTCAAACACCATCAGAACCGTAGAGCAAGAGATGAGGTCTCAGGACATCCCATTCTTACAGAACTACAAGGATATCATCAAGAGAACCTGGCATATGCCGCTGGATCCAAAGATTATTCCTGGAACTCTGATTGATGTTGCAAAGCACCTGGGTTCTGTAAAGTTCAACATCTGGGACAAGATGAAGAGCATCATTCAATATActcCTGTGACTCTGGACCCCAACACAGCTGCTAGCTGCTTCATCCTGTCTGAGGATCTGACTGTGGTCCAGTGCTGCTCGCAGGTCTTCAAGCTCCCAAACAACCCCGAGAGGTTTGACATCAGTGCTGAGTTACTGGGCTCCGAGGGGTTCTGCTCTGGCCGCCACAGCTGGGAGGTAGAGGTAAAGGCTAACACATACTGGGTGGTAGGTGTGGCCAGCGAGTCTATCAACAGGAAGGGCAAGCATGTGCTGACGCCAGCCGAGGGCTTCTGGACTATACGCTTCCGCAATGGCGAGCACAAGGCGTGCACGGCACCGTGGGCGCCCTTGACCATGATGAGGAAGGAGCCTCAGGTCATCAGGGTGGTGTTGGACATGGACAGGGGCAAGGTGACCTTCTTTGACCCCCGGGAGAGGACGCCCCTCTATACGTTTACAGACCTCATCTCACCCCGGGTGTTTCCTTACTTCTGCACTGCCTGTAAGGAACACCCACTGAGACTGCTGCCCGTCAGGCTGTCTGCTGCTGTGGTGCTCTAGAGGGCTCCATGGGGGTTCATTACTAACAAGCAGTGGAGGCTCAATTACTTACAGACAGATCCAGTTGAGTTTACTAGTCCTAGATGATGAAGGCTGATCACTTGGGACCGTCTGGAATAAAGCATGTAATGGTCTTA

Function

NR:

description
zinc-binding protein A33-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558560.2 False 1983 mRNA 0.51 6 51405257 51411271
XM_036941444.1 True 1502 mRNA 0.51 6 51405257 51412417

Neighbor

gene id symbol gene type direction distance location
LOC110486734 LOC106606824 coding downstream 75941 51324906 ~ 51329316 (-)
LOC110485210 adgrl1 coding downstream 175060 51010619 ~ 51230197 (-)
LOC110486730 tmed1 coding downstream 521563 50876515 ~ 50883694 (-)
LOC118938315 NA coding downstream 536513 50867328 ~ 50868744 (-)
LOC110486728 qtrt1 coding downstream 572549 50827395 ~ 50832708 (-)
LOC110486740 LOC106606777 coding upstream 10173 51422590 ~ 51424573 (-)
LOC110486741 erf3b coding upstream 15268 51427685 ~ 51441706 (-)
LOC110486742 NA coding upstream 30470 51442887 ~ 51464818 (-)
LOC110486743 LOC106601710 coding upstream 57673 51470090 ~ 51508651 (-)
LOC118938316 NA coding upstream 106493 51518910 ~ 51522697 (-)
G1186113 NA non-coding downstream 27038 51377457 ~ 51378219 (-)
G1185369 NA non-coding downstream 86658 51318273 ~ 51318599 (-)
G1185355 NA non-coding downstream 109734 51295271 ~ 51295523 (-)
G1185353 NA non-coding downstream 112450 51292541 ~ 51292807 (-)
G1185348 NA non-coding downstream 114883 51289769 ~ 51290374 (-)
G1186150 NA non-coding upstream 71873 51484290 ~ 51484518 (-)
G1186153 NA non-coding upstream 75084 51487501 ~ 51487704 (-)
G1186175 NA non-coding upstream 120874 51533291 ~ 51533538 (-)
G1186182 NA non-coding upstream 128585 51541002 ~ 51541418 (-)
G1186075 NA other downstream 31303 51352309 ~ 51373954 (-)
G1186080 NA other downstream 81326 51321800 ~ 51323931 (-)
G1185046 NA other downstream 623399 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 647213 50732097 ~ 50824433 (-)
G1184986 NA other downstream 776718 50626647 ~ 50628539 (-)
G1186154 NA other upstream 77360 51489777 ~ 51490241 (-)
G1186381 NA other upstream 512546 51924963 ~ 52030660 (-)
G1186216 NA other upstream 598273 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1246914 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 2194607 53607021 ~ 53638313 (-)

Expression


Co-expression Network