LOC110486740 (LOC106606777)


Basic Information

Item Value
gene id LOC110486740
gene name LOC106606777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51422590 ~ 51424573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558563.2
ATCCCGTCTACCCAGCCCTCCCTCACCTGTCTACGGCTACCACGCCCCACCTCTCTGTGCTGTGCCCTGTGCTGTGACACAGGACAATTTGAATAGAGGCGAGCTTCCTCACCTGTCTCACCTTACCTCTTCAAACAAACGGCTCCGTTTGAAACTTTACCCCAACCGAATTCACCGAATTCCACCAGGAAACCAACCGCAAATGATAGTTAGAAAAGAAAAGGTGGTCTAAACAAAGTATTTGTTAGGCCTATCTCCAAGCCAATTTAGAGACATGGAGCCAACGTATCGCGGTCTAGGTCGCTGTTCCTGCGCCTTTTGGTTGGCAGTGTCTTTCGACATATTCGGTCTGCTTGTTCTTTTGATCGGTGTTTTTGCGGACATATTCTTCTATGACTTTTTAATCTACGCCGGGGCCATCATCATCTTCCTCAGCCTCGTCTGGTGGGTGTTCTGGTACACGGGCAACATCGAGGTCCCCCCGGAGGAGCTGGAGGATGACGTCGGGCTCTTGAAGAAGGAGCGGGGCATCGCAGGTGCGGTGAGGCGGTTATCCAGCCGTCTCTCCAACAGTGTCAGGAACTCTCTGCGGCGGAATGGAGGCCCCCCCCGCGGGGTCGCGAGAAAGGCAGGGACCGGGCTGTCTACGACGCACATGAGGGATGCCCAACAGCAACCGAAGCCCCCGCCTGTCGTATTGACGATGGGGCCGCTTGATGAGGACATGCACACGGTGTCTGCATCCGTGGACACAGACATACCTGTCCCGTACACAGCTACAGAGACCTCGGCCATATGATGCGCAATGCGCACAAGGTTAGCCTAATATTTCCAATCGGTCATTAAGCCATTTAGGCTATAGCCTAGGGATACATTTTGTTATTGGATAGGCCTAATTTTTATTAAACATGTGCATAGATTATAGGTTTTATGGGCCAACTTCATTCTAGGCTATTGTTTTTGATGATAATAGCCCACAACTTTGATCCACAATTCAGCAGGCTATAATGTTCCTTATAATTAAATTAAATGACAATGTGTTTCAGTGAATGAGGAAAGAAACTGTGTGATCTAATGGAAACGGACGTCCTTTATCTTTCTGTTAACCATTAACGTCATTGAATGGCAGTGCACGCCTAAAGAGAAGCCCTCCTCAAACAATAAAACCGTTTCTGAGAGGGCGAAGTAGAGCTGCTGCTACATGAAACAAAGAAACGTAGGTTGACCATGAATTGTCTATCTTAGGAGTTAGGACACATTTTTGACATCGATCTAAACTGATGTAAGCTACAGTATGACTGTATGTTGCAACTATGACATCATGAGGTAACCATATATTTTGTCCACCAGAAGTTAGAGGCTTGGCAGCACTGAACCCCAGAAGGACATTTCACTTGTCCATCGCACAATGTTTACAAGCACATTTCGCTTTTAATATTGTCCTATGGCCTTTTTTCTTTGAAACATTTCGTTTTTAAAATCAAATTATGCTCCTCAGTGAggactttttgtttgttttatgttAATTTTGTGAATACTTTGTGGATAATTGATGCAATACTTTGATAATACAGAGATTTTTTCTAGCAAATATGTCAGACTTTCACTTTTAGGGCTAAGTGCTACTGAGAAGGTGCTTGTTGTGAACTTGACCTGGCACCTGTATTCTACATCCCCGTCCACAGTGGTGATAAGCAATATAGCACATTAACGACCTTTGTACCCTATGGATTTCcctacctttatttatacagacATTACTTTTGTATGTCCATATTACTGCCTCATCATGCTTTATGAACCTTTTACCTGTTTGTATTTCCAACTGACAGTTCTCAGATTTTTGCCAAACACAGTACCTACACATGGACTAGAATAACATATGAGTGTTACTGTGTGGAATGACAACACTTTGATTATCTACAGTAGGCTAGCTTTGACCTTGACACCTTGTTACTCCACACAATAAAGTATGGGAGCGGTG

Function

NR:

description
transmembrane protein 238-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558563.2 True 1984 mRNA 0.45 1 51422590 51424573

Neighbor

gene id symbol gene type direction distance location
LOC110486738 LOC106606773 coding downstream 10173 51405257 ~ 51412417 (-)
LOC110486734 LOC106606824 coding downstream 93274 51324906 ~ 51329316 (-)
LOC110485210 adgrl1 coding downstream 192393 51010619 ~ 51230197 (-)
LOC110486730 tmed1 coding downstream 538896 50876515 ~ 50883694 (-)
LOC118938315 NA coding downstream 553846 50867328 ~ 50868744 (-)
LOC110486741 erf3b coding upstream 3112 51427685 ~ 51441706 (-)
LOC110486742 NA coding upstream 18314 51442887 ~ 51464818 (-)
LOC110486743 LOC106601710 coding upstream 45517 51470090 ~ 51508651 (-)
LOC118938316 NA coding upstream 94337 51518910 ~ 51522697 (-)
LOC118938317 NA coding upstream 102041 51526614 ~ 51530761 (-)
G1186113 NA non-coding downstream 44371 51377457 ~ 51378219 (-)
G1185369 NA non-coding downstream 103991 51318273 ~ 51318599 (-)
G1185355 NA non-coding downstream 127067 51295271 ~ 51295523 (-)
G1185353 NA non-coding downstream 129783 51292541 ~ 51292807 (-)
G1185348 NA non-coding downstream 132216 51289769 ~ 51290374 (-)
G1186150 NA non-coding upstream 59717 51484290 ~ 51484518 (-)
G1186153 NA non-coding upstream 62928 51487501 ~ 51487704 (-)
G1186175 NA non-coding upstream 108718 51533291 ~ 51533538 (-)
G1186182 NA non-coding upstream 116429 51541002 ~ 51541418 (-)
G1186075 NA other downstream 48636 51352309 ~ 51373954 (-)
G1186080 NA other downstream 98659 51321800 ~ 51323931 (-)
G1185046 NA other downstream 640732 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 664546 50732097 ~ 50824433 (-)
G1184986 NA other downstream 794051 50626647 ~ 50628539 (-)
G1186154 NA other upstream 65204 51489777 ~ 51490241 (-)
G1186381 NA other upstream 500390 51924963 ~ 52030660 (-)
G1186216 NA other upstream 586117 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1234758 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 2182451 53607021 ~ 53638313 (-)

Expression


Co-expression Network