LOC118938316


Basic Information

Item Value
gene id LOC118938316
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51518910 ~ 51522697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035587.1
ATTGTCATATACTGGCATTTTACTTCAAGCCTTTCTGAAACAAATGCAAAGAATGTAATTGAATTCATATAAGAACTACACACATTACCTCTGAATGGTTGAgtcttgtgttttttttgttgcataatatatatatatatttttaccaatAGATCAATAAAAACGAATTGCATGATGTGAATTGAATGGCCATAAATCAACATAATCCATATAACTGAATTAATATGTTTTTAATATTGTGAATGGTGCTCATTGACATTTTTCATTCATTCTTTATAGACCCTTCAATCCTTTATTGTCTTTTAGACCCTGCGGTCCATGTTGGCGACCGTAAAATGGGACAAATGAATCAATAAGGAGGTCATCCCACCACATGTAGCCACAGGCCACAGCAACCCTGTCATTCAAGTCACTGGTGAGGAGCAGGGTTATCACTCGCCTCCATCTACTACCTCAACCAATGACAATGCTGTGTTGAGCCAACCCCCTCTGACACGCCCAGCCAACCAGAGCTCAGTCATTCATGTACAAGAGTGCATATTGTCAACTAACTAAGTATTGTGTAGATGACAGAGTGGGActaggaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacctaacTCTCAGACTCCCGCGCCAGAATTAGACACACTTGGCACCAGCATATCTAGGCTCCACCCAACCACAACCCAAGCTTGAGTTGTTACTGCATCTCCAAACCCGACAGTCAGTTCTTTATCATCAATACTATTAAACCGTGGCCTTCTCTTAATGAGATTTATAGGCGTGGCTTTCACAACGTGATCTGCCCTCTCAGTCTGCTGTGATTGATCACTGTGTGTGGGTCCCCTTCGTCTCCACAGACTGAGAGTGAATTAGCTATTGATCCCGGCATGGGGTCACTGTGTGTTATAGGACAGGACTGGAAGTGTGGTTTGTGGGGTGTGAAGACACTCCTACTGCTTAAAGTCATGGAATGATAGTTTCCTCTTAGTGTTATTGAGGAGATGATGAATTATATAACAGGAAATATTTGAAGCCACTGTATGTTGGTTGACTATGGATCAGGGATGGATGCTCTTCCACTGGCTACTACAGTATACAGTGGTGGTgatatggatgtgtgtgttcaTCCAGATCCTCAGGGCTTGGTCCTGAGCAGACAGAGAGTACAGAGTGGCAGCAGTCCAGGCCAAGCGGGCAGGAGACATGGAGCTAGCCAGACGTTACTATCGGACAGCAAAGaaaTTAGAGGTGATGGTTGAAGAGGCATCTGAGAGGAGTGAGTGGTCATCAGCTCTATACCACCCCTCCTGacGAACCACTcaaacaacagacagagacagacaccagccTCAGTCACATGACTTGTCCTGCCAGTAAGAAGGAGCCTCCTGGCAGCATGATCATGATGTCAAGAACAGAAGACAAGGTACAAGTCCACTCCCAGCCCCTCCCAGTGCCTCCTGGAGCCTCAGACCAgtacaaccagctgatagaggtCCTCACACAGCAACAACGGaaGTGTCTGTGCCAGCAGTTCACCCACATGGGGGAGATCACTGAGACAACTAGGTCTGTACTGGCCCTTTTCATTACCTCTTGTGCATTGATAAACGATATATAAGTTATATAACGGATAGCAGACAGGTGGACATGTGCTGCCTTAGGACAGGTCAGACACGCAGAACGACACCGTTGATGTGAGAATGTGTATTGTTTAGACAGGTTGGAGGTGCTGTCAGAGGGGTGTAGGAGACACCTGGAGGTCGTGAAACAGGTACAGAGTAGAGGACACCTGTTACCCCCATACACAGAGGAACGCA

Function

NR:

description
PREDICTED: coiled-coil and C2 domain-containing protein 1A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035587.1 True 1860 mRNA 0.46 5 51518910 51522697

Neighbor

gene id symbol gene type direction distance location
LOC110486743 LOC106601710 coding downstream 10259 51470090 ~ 51508651 (-)
LOC110486742 NA coding downstream 54092 51442887 ~ 51464818 (-)
LOC110486741 erf3b coding downstream 77204 51427685 ~ 51441706 (-)
LOC110486740 LOC106606777 coding downstream 94337 51422590 ~ 51424573 (-)
LOC110486738 LOC106606773 coding downstream 106493 51405257 ~ 51412417 (-)
LOC118938317 NA coding upstream 3917 51526614 ~ 51530761 (-)
timm29 LOC106606779 coding upstream 36970 51559667 ~ 51562465 (-)
carm1 carm1 coding upstream 44263 51566960 ~ 51581205 (-)
LOC110486760 LOC101074561 coding upstream 59164 51581861 ~ 51585591 (-)
LOC110486749 LOC106601716 coding upstream 69462 51592159 ~ 51607002 (-)
G1186153 NA non-coding downstream 31206 51487501 ~ 51487704 (-)
G1186150 NA non-coding downstream 34392 51484290 ~ 51484518 (-)
G1186113 NA non-coding downstream 140691 51377457 ~ 51378219 (-)
G1185369 NA non-coding downstream 200311 51318273 ~ 51318599 (-)
G1186175 NA non-coding upstream 10594 51533291 ~ 51533538 (-)
G1186182 NA non-coding upstream 18305 51541002 ~ 51541418 (-)
G1186183 NA non-coding upstream 21359 51544056 ~ 51544359 (-)
G1186189 NA non-coding upstream 30721 51553418 ~ 51553632 (-)
G1186154 NA other downstream 28669 51489777 ~ 51490241 (-)
G1186075 NA other downstream 144956 51352309 ~ 51373954 (-)
G1186080 NA other downstream 194979 51321800 ~ 51323931 (-)
G1185046 NA other downstream 737052 50780265 ~ 50781858 (-)
LOC110485208 LOC106606837 other downstream 760866 50732097 ~ 50824433 (-)
G1186381 NA other upstream 402266 51924963 ~ 52030660 (-)
G1186216 NA other upstream 487993 52010690 ~ 52011211 (-)
G1186670 LOC100194703 other upstream 1136634 52659331 ~ 52659809 (-)
mosmoa C20H16orf52 other upstream 2084327 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 2283947 53806640 ~ 54049592 (-)

Expression


Co-expression Network