LOC110486767 (alkb7)


Basic Information

Item Value
gene id LOC110486767
gene name alkb7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52374824 ~ 52390015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941457.1
TGCAGTGCGTTTTAAAAATGTCGCCCTACTTCGTAACTTGACTTCTGTGCCATCAGACAACTGTCATAGCTTAATTTAGCAAATCTGACAGTCTACGTAAATAATTGTATTTACTGAAGCATGAGACTTCTGGTTACATTTGCCAGACGTATTCATAAACGGCCTCTGTACACTCCCACATCATGTCTAAGTTCGGCAGCGAGTTGCTCCGGGGCTGCTACGAACAGCGGCCTGCAGTTCAGAGATGACCAACTGGTCTGCGGTTCGACCGGAGAGCTGGTCCAGAGGCTTCGCGGTCAGGTGGAGGCGATTCATGGTTACCGGGAGACAGAGCGTGCTCAGTGGGGAGCGGTGTGTGAGGGGGTGATGGATCGCCTCCGAGCTGTGGCTTTCTCTGAGGGCAGCCCTCTCCTAGGCCCTGTGCATGTCCTGGACCTGGACAAGGCTGGATACATCAAACCACACATCGACAGTGTCAAGttctGTGGCAGCACTATAGCAGGGCTGAGTTTGTTGTCAGACAGTGTGATGCGCTTGGTGAGGGAGGATGAACCTGCTGAATGGCTGAACCTGTTTCTGCCCCGTCGCTCTCTCTACATACTCAGAGAGTTCCCCGCCATCGCCGCATCTCTGTCATCTGCCGGAACCTTCCTGTTTGAAGCATGAGAGCCAAGAGGGACACAACTGTGACAGTCTCACTGGCAGTAGCCAGAGCTCGGTATCTGAGACTTCAAGAACATCACTGTGCTAAAATGTGATGTACACGCTTTCTCACTGCGAGAGACTATGTTGGGAAAGATGATTTAGATGTTTCCCTTATCAGTTTTCATTGGAGCACTTCATAATAAACTACCTGTACAGGATTTGATTCTGAATTAAATGTTGGGAAGGCATTCAGGTATGATGCATTTCAAAGGGTCATAATGCATTACAAGACTTGTCATAAGTATCTATGAACTTCTTATGCTAATTAATATTATATAATGAATCTGAGTTATTAGCCTTTTCAAAAATGCCACATAGAAAGGCAAGTTGATAAGTTGTAGGAGAACCAGTTGAAGAAGAACCTGCATTTTCTATCCAAGATCTGTACTAGGTAATTACCAATTGCTTTGAATTCTTAGAGGTAAATGGATACTTCAAATAGTTATAGCCCTATTTTCGACGTCGCTCATGAGCGTTATAGAAGGCTACAATGCGGAGCCTGGGAAATAACTGGTGACATTTTTCAGAATATTTTTTAGAACGCATATCTATAATCTGTAACTCCTTGTCCATCCATCCAAATTGTTTAATGTGTGGATATCTGTATAGAAACCGTTTGAAACTCTTCTCCAACCCGGCACCTATAACCAGAGGACTCATGCCCATGtcctgtttaaaaaataataatctgattAAATTAATGACTAAACTTCATTTTTAAACCCATGTTTTACCATCATTGTTTATAAAAAAATCTGTCAGtggtatttagtattttattagcgTCTCCATTAGCTACTGCTCTTACTGGGGTCCACaaaaacatgatgtaatacatCACAAGGATAGAACTACAATCCATACATTTAAAATAATATTCTCTTTCCTACATTTATGCCTTCATAATCATGTGATTCATACTGAATGAAAGTGCAATACACGAAAATGAAATAAGGAGGTTCCCCTGACGTGAATATAGCAACCTTGTTTTGTTAAATTCCCCTGATGTGAATAAAGCTACATTGTTTCTA
>XM_036941456.1
GCAGTGCGTTTTAAAAATGTCGCCCTACTTCGTAACTTGACTTCTGTGCCATCAGACAACTGTCATAGCTTAATTTAGCAAATCTGACAGTCTACGTAAATAATTGTATTTACTGAAGCATGAGACTTCTGGTTACATTTGCCAGACGTATTCATAAACGGCCTCTGTACACTCCCACATCATGTCTAAGTTCGGCAGCGAGTTGCTCCGGGGCTGCTACGAACAGCGGCCTGCAGTTCAGAGATGACCAACTGGTCTGCGGTTCGACCGGAGAGCTGGTCCAGAGGCTTCGCGGTCAGGTGGAGGCGATTCATGGTTACCGGGAGACAGAGCGTGCTCAGTGGGGAGCGGTGTGTGAGGGGGTGATGGATCGCCTCCGAGCTGTGGCTTTCTCTGAGGGCAGCCCTCTCCTAGGCCCTGTGCATGTCCTGGACCTGGACAAGGCTGGATACATCAAACCACACATCGACAGTGTCAAGttctGTGGCAGCACTATAGCAGGGCTGAGTTTGTTGTCAGACAGTGTGATGCGCTTGGTGAGGGAGGATGAACCTGCTGAATGGCTGAACCTGTTTCTGCCCCGTCGCTCTCTCTACATACTCAGGGACCAGGCCAGATATAAGTTCACCCATGAGATCCTTAAAGATGATGAGTCTCTTTTCTCTGGACAGAGAGTTCCCCGCCATCGCCGCATCTCTGTCATCTGCCGGAACCTTCCTGTTTGAAGCATGAGAGCCAAGAGGGACACAACTGTGACAGTCTCACTGGCAGTAGCCAGAGCTCGGTATCTGAGACTTCAAGAACATCACTGTGCTAAAATGTGATGTACACGCTTTCTCACTGCGAGAGACTATGTTGGGAAAGATGATTTAGATGTTTCCCTTATCAGTTTTCATTGGAGCACTTCATAATAAACTACCTGTACAGGATTTGATTCTGAATTAAATGTTGGGAAGGCATTCAGGTATGATGCATTTCAAAGGGTCATAATGCATTACAAGACTTGTCATAAGTATCTATGAACTTCTTATGCTAATTAATATTATATAATGAATCTGAGTTATTAGCCTTTTCAAAAATGCCACATAGAAAGGCAAGTTGATAAGTTGTAGGAGAACCAGTTGAAGAAGAACCTGCATTTTCTATCCAAGATCTGTACTAGGTAATTACCAATTGCTTTGAATTCTTAGAGGTAAATGGATACTTCAAATAGTTATAGCCCTATTTTCGACGTCGCTCATGAGCGTTATAGAAGGCTACAATGCGGAGCCTGGGAAATAACTGGTGACATTTTTCAGAATATTTTTTAGAACGCATATCTATAATCTGTAACTCCTTGTCCATCCATCCAAATTGTTTAATGTGTGGATATCTGTATAGAAACCGTTTGAAACTCTTCTCCAACCCGGCACCTATAACCAGAGGACTCATGCCCATGtcctgtttaaaaaataataatctgattAAATTAATGACTAAACTTCATTTTTAAACCCATGTTTTACCATCATTGTTTATAAAAAAATCTGTCAGtggtatttagtattttattagcgTCTCCATTAGCTACTGCTCTTACTGGGGTCCACaaaaacatgatgtaatacatCACAAGGATAGAACTACAATCCATACATTTAAAATAATATTCTCTTTCCTACATTTATGCCTTCATAATCATGTGATTCATACTGAATGAAAGTGCAATACACGAAAATGAAATAAGGAGGTTCCCCTGACGTGAATATAGCAACCTTGTTTTGTTAAATTCCCCTGATGTGAATAAAGCTACATTGTTTCTA
>TU1352390
CAGTCCCCCTCCACAATCCCACCCCTGTTGACAATGATCACTCCCTTGAGGCCCCTACCATCATTGAAtgaaaaaatgtaattaattCTTTCAACATTGTGCTCACCAGGCGATTCATGGTTACCGGGAGACAGAGCGTGCTCAGTGGGGAGCGGTGTGTGAGGGGGTGATGGATCGCCTCCGAGCTGTGGCTTTCTCTGAGGGCAGCCCTCTCCTAGGCCCTGTGCATGTCCTGGACCTGGACAAGGCTGGATACATCAAACCACACATCGACAGTGTCAAGttctGTGGCAGCACTATAGCAGGGCTGAGTTTGTTGTCAGACAGTGTGATGCGCTTGGTGAGGGAGGATGAACCTGCTGAATGGCTGAACCTGTTTCTGCCCCGTCGCTCTCTCTACATACTCAGAGAGTTCCCCGCCATCGCCGCATCTCTGTCATCTGCCGGAACCTTCCTGTTTGAAGCATGAGAGCCAAGAGGGACACAACTGTGACAGTCTCACTGGCAGTAGCCAGAGCTCGGTATCTGAGACTTCAAGAACATCACTGTGCTAAAATGTGATGTACACGCTTTCTCACTGCGAGAGACTATGTTGGGAAAGATGATTTAGATGTTTCCCTTATCAGTTTTCATTGGAGCACTTCATAATAAACTACCTGTACAGGATTTGATTCTGAATTAAATGTTGGGAAGGCATTCAGGTATGATGCATTTCAAAGG

Function

NR:

description
alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941457.1 False 1736 mRNA 0.42 4 52374824 52390015
XM_036941456.1 False 1802 mRNA 0.42 4 52374825 52390015
TU1352390 True 720 TUCP 0.50 3 52378870 52389196

Neighbor

gene id symbol gene type direction distance location
LOC110486765 LOC106606792 coding upstream 232094 52141273 ~ 52142730 (+)
LOC110486764 LOC106606789 coding upstream 235325 52121483 ~ 52139499 (+)
LOC110485215 LOC106606764 coding upstream 283141 52014531 ~ 52091683 (+)
LOC110486763 NA coding upstream 419965 51952116 ~ 51954859 (+)
LOC110486748 NA coding upstream 433784 51779397 ~ 51941040 (+)
LOC110485217 fcl coding downstream 16162 52406177 ~ 52414576 (+)
LOC118938557 LOC106601687 coding downstream 53974 52443989 ~ 52444998 (+)
LOC110486773 LOC106601688 coding downstream 62779 52452794 ~ 52612169 (+)
LOC110486772 NA coding downstream 222233 52612244 ~ 52616224 (+)
LOC118938093 NA coding downstream 295848 52685863 ~ 52688094 (+)
G1185900 NA non-coding upstream 15346 52350048 ~ 52359478 (+)
G1185898 NA non-coding upstream 27923 52346113 ~ 52346901 (+)
G1185841 NA non-coding upstream 116623 52257351 ~ 52258201 (+)
G1185788 NA non-coding upstream 128286 52244813 ~ 52246538 (+)
G1185835 NA non-coding upstream 139982 52233787 ~ 52234842 (+)
G1185887 NA non-coding downstream 13007 52403022 ~ 52403680 (+)
G1185940 NA non-coding downstream 94464 52484479 ~ 52485136 (+)
G1185921 NA non-coding downstream 227679 52617694 ~ 52621551 (+)
G1185855 NA other upstream 18883 52274330 ~ 52355941 (+)
G1185815 NA other upstream 198319 52175266 ~ 52176505 (+)
G1185528 NA other upstream 409334 51963423 ~ 51965490 (+)
LOC110539012 LOC106606743 other downstream 614037 52907896 ~ 53046938 (+)
LOC110538743 LOC106601732 other downstream 1056408 53445335 ~ 53450473 (+)
G1187452 NA other downstream 1798552 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1874051 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1901570 54272638 ~ 54300365 (+)

Expression


Co-expression Network