LOC110485217 (fcl)


Basic Information

Item Value
gene id LOC110485217
gene name fcl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52406177 ~ 52414576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941463.1
GCAGAATGGTTGGGAGGAGAAGCTTCATTTACAGAAGTTCTAAGCAGCCAAAAACATGTGACCCCTGGCCTGTAGTGAAGGATTAGGTTTACGCTTTTTGTTTCATTGGACACTGAAATACGAACTCAGTGCTGCATGATTTTTTTTATAGCAGTTCTAGCATTCAGCCATAATGGTATATCCTGTGTGAAAATAGCTCTGTAATCTGCATATTCTCTGCTTTTTCTCTAAGAGTGTAGCTCAGAGGTAGCCTATTAGAGCGACTCCGCCTTGCGCCTGCCCTATTGACAGGTTAGTGTGCAAGACAAGAGAGATAGCCTGTACCTCATTGATGTACTTGAGCGTTCAGAAATAGGATCTAATACCGACATTATTCGAGGAGTAAAATTCTAACAAAACATTTTACAGAGTGAGAGATGGATTCGCAGACGAAGACTGAGCCGATGCGCGTGCTCGTCACGGGCGGATCCGGATTGGTCGGGAAGGCCATCGAGCACGTGGTGAAACAAGAAGGCGGCTGTCTCGAGGGCGAGCAGTGGACCTTCCTCTGCTCCAAAGAGGCCAACCTCGTAGATCTACAACAGACAAGAGCAGTGTTTGAGAAGTATCGGCCCACCCATGTCATCCACCTGGCTGCCAAGGTGGGAGGACTCTATCTTCACATGAAGGAGAACCTACACTTTCTGAGGGACAACCTTCGCATCAATGACAACGTGCTGCAGACGTCTCACGAAAGGGGCGTCACCAAGGTGGTGTCCTGTCTGTCCAGCTGCATCTTTCCTGACAAAACCACATACCCTATTGATGAGAGCATGATCCACAATGGGCCCCCACATGACTCAAACTTTGGCTACTCACATGCCAAAAGAATGATTGATATTCAGAACAGGGGATACTTTGAGCAGCATGGGCGTCGCTACACCGCCGTAATCCCGACTAACGTGTATGGTCCCTATGACAACTTCAACTTTGAAAATGGTCACGTGCTCTCAGCGCTCATGCATAAGACATATGCTGCTAAAAAGGAGGGAACCCCACTACAGGTGTGGGGCTCCGGAACACCCAGGAGACAATTCATCTACTCTCTggaTGTTGCACGTCTGTTCCTCTGGGTGCTGCGGGAGTATGATGAGATTGACCCCATCATTCTCTCTGtgggggaggaggaggagctccCCATCAAGGACGCCGTAGAGATGATTGCAGATGCCCTGGACTTCAAAGGTCAAATAGTTTTCGACACCAGCAAGTCAGACGGTCAGATGAAGAAGACGGCCAGCAACGCCAAGCTGCAACGCTACCTCCCTGACTTCACCTTCACGCCGCTCTCTGAAGGTATCAAGAAGACCTGTGATTGGTTCGTGAACAATTACGACATAGCCCGAACATGAAGACCAATGAAGGGCGAGACATGAATATTGTTTAATGAAAAAGATCAGGGCTACATCCCAACACTATTACTGTGCCTTCCAAGTCTTGTGTCCTTGTCTTCATGCCAACTGATTAGTGAAAGTTCTGGATAGGTTTCACCATGTGGCCGGTTAAGTTCTGTCAGATCAGTGGGCATGAAGTAATGGCACACAGGACTCACAATACCCCACCATGTTGTTCTCCCCAGAACTGTCTGGCAACCATTTTGGATCCTTTCTCCTCTATTTGCACCGTTGATGTCAGGGATTGACATTAAGGTTTGAAAGGCTCTTGCCCATTGGACAGCAGTTTGTTTGTTGGTTGCCTGGTGATTACTGTCACTTGACAGAACATTTTAAAGTAATTGTTTACAAGCAAAATGGTCACAGGGATACTttgagattttggcaatgaggcccatTATCTACTTCCTCAGAGGCTGTTGAACTcctggataccatttttatgtctctttgtccagtatgaaggaactTAGAGGTCATTTTGTGAGCCAATGCAAACtagtgttagcacaatgactggaagtctatgggtatctgctagcatgctatgaAGTAGAAAAATCAGTTTGAATGCGTAACTTTTGCAGCGCAATGAGACCCTTCTGCAACCTGGTTGTAAACATACCGGCTCTGGAAGACTCAGATTTAGACGCACAGCTCACAATCGAGAGCCATAGGATATAGTATTGTCTGGCGCTCTGCTCACCCTGACCAATAGTTATACTTCCTGTGTAGCAGGACCAAAAAAATGTAAGTGTAGCCCCTATGTTAGGCTACTGAAATTCAGTTTGGAAAAATCCCCTGCCTAATGGGGCAACCAGAGCAGGTTCAACTTGCCCGACTGCTCAGTTCATTTGCTCCAAGCAATTGGGCAACCCTTAAGGTCAATCCCTGATCATGTCCTCCCCTGATGGTGTCTGAACTGGTCCAGCCACCTGATCCCCTACAGTATGACTACCAGTTACTATCAGCAATACTGCAGGGTCATGTGTTTACACTCAAATACATCACATTATTTTCATTTTAATATCTAACatatatagttgaagtgtatGATCTATTTGTGATTGAATATTGACAAAAATATGGACTTTTTCTTGATGTAAGAATGAGGTGTCAGTCGTTGAGAGTGATGCTGAATGACATGTTTTCTCACTACAAAACAACAAGTATAAGCCTACAGTAAAGTAGCCTGGATCTAAA

Function

symbol description
fcl Involved in embryonic development via the syncytial blastoderm.

NR:

description
GDP-L-fucose synthase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0050577 GDP-L-fucose synthase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941463.1 True 2636 mRNA 0.46 11 52406177 52414576

Neighbor

gene id symbol gene type direction distance location
LOC110486767 alkb7 coding upstream 16162 52374824 ~ 52390015 (+)
LOC110486765 LOC106606792 coding upstream 263447 52141273 ~ 52142730 (+)
LOC110486764 LOC106606789 coding upstream 266678 52121483 ~ 52139499 (+)
LOC110485215 LOC106606764 coding upstream 314494 52014531 ~ 52091683 (+)
LOC110486763 NA coding upstream 451318 51952116 ~ 51954859 (+)
LOC118938557 LOC106601687 coding downstream 29413 52443989 ~ 52444998 (+)
LOC110486773 LOC106601688 coding downstream 38218 52452794 ~ 52612169 (+)
LOC110486772 NA coding downstream 197672 52612244 ~ 52616224 (+)
LOC118938093 NA coding downstream 271287 52685863 ~ 52688094 (+)
LOC110486774 sgsm3 coding downstream 290975 52705551 ~ 52731809 (+)
G1185887 NA non-coding upstream 2497 52403022 ~ 52403680 (+)
G1185900 NA non-coding upstream 46699 52350048 ~ 52359478 (+)
G1185898 NA non-coding upstream 59276 52346113 ~ 52346901 (+)
G1185841 NA non-coding upstream 147976 52257351 ~ 52258201 (+)
G1185788 NA non-coding upstream 159639 52244813 ~ 52246538 (+)
G1185940 NA non-coding downstream 69903 52484479 ~ 52485136 (+)
G1185921 NA non-coding downstream 203118 52617694 ~ 52621551 (+)
G1185919 NA non-coding downstream 207106 52621682 ~ 52624208 (+)
G1185855 NA other upstream 50236 52274330 ~ 52355941 (+)
G1185815 NA other upstream 229672 52175266 ~ 52176505 (+)
LOC110539012 LOC106606743 other downstream 589476 52907896 ~ 53046938 (+)
LOC110538743 LOC106601732 other downstream 1031847 53445335 ~ 53450473 (+)
G1187452 NA other downstream 1773991 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1849490 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1877009 54272638 ~ 54300365 (+)

Expression


Co-expression Network