LOC110486773 (LOC106601688)


Basic Information

Item Value
gene id LOC110486773
gene name LOC106601688
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52452794 ~ 52612169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558588.2
tctctctatctcgcgcGCGCTCTTATCACTCGCGCGCTGTGCAGCTGAACTACGGCGTTGGCAGAgaatataaaaaaatctgcctcTTTGCTTCAAGCGTTGGAAGAATATTTTGGAACGGAAATCAGAGGAGCTCGTGGTCCTACATCCCAGTGGGTTCTATGCTGTGAGTCTCTACAGCAGTACTGAATCCCAGTAGTCTGGACCACAACCACAAACAACCAGTGACGGCTGTAGGGCCACTCCACTAGACCGAAACTCAACCACAGACCGTTAGAGGACTTCTCCCTGTTCCACTACCTCACTTACCAAAACCACTGTGGcacgggaggaagaggaggaagatagaAGATCATGCCCAGAAGGAGAGTAAATCATCAGTGAAGAGAAGAGGTCATGCTCCTGGAttaagaagacagacagacagcagaccaagagacagacaggcagatcaGaCTCACGTCTCGCCAGCGGATCCTGCTACTTCCTATGTGATCAATCAACAAGACTTCCTGTCGGAGAGATTATGAGGAATAGCTGTTTCACTACCCACGGCAGTCCAACAGGAAGTGAAAAGACATGGGGACTCTGCTAATCACCATGACAACCATACAgctgtgactgactgtgtgaggCCCCTCCCTCTTTTTCTACACCCAAGCTAAACCCATTCTCCCCTTTCTGAGGACAACCTAGCTACGCCTGTCCATCCCCCACGCTCTTTCTCCTTTAAACTCAACCTCGCTTTTCCTTATTTCAGTCCCACGTTTCCTCCATCTTAACAAAACCTCCCTCTTcattcgtcctcctcctccttctcttccctccatcatcATGCTCAGCAGGCTTCACactcactcctcctcttcctctccatctacccccaccctcctcatccttccctctctcatcctcttcctccaccttccGGGCCTGGTCTGGGGGGACTGCTGGCTGATCGAGGGGGACAAGGGCTACGTGTGGCTAGCGATCTGCAGCCAGAACCAGCCTCCATATGAGACCATCCCCCAGCACATCAATAACACGGTCCACGACCTGAGGCTCAACGAGAACAAGCTCAAAATGATCCCCTATACCTCCATGTACCGCTTCACCAACCTCACGGACCTCAACCTTACCAAGAATGAGATCTCCTACATCGAGGACGGGGCCTTCGCTCAACAGGCCAACCTACAGGTTCTCCAGCTGGGCTACAACAAACTGACCAACCTGACAGAAGCCATGATGAGGGGCCTGGGCCGGCTGCAGTGCCTCTTCCTCCAGCACAACCTCATTGAGGTCATTGGCATCAATGCATTGGATGAGTGCCTCAGTCTCAACAGCATTGACCTGTCGTCCAATAAGCTGGCCCGCCTCGACCCCTCCACCTTTACCATTTTGAATCGCCTCATGGTGTGTGAGCTGGCTGGGAACCCCTTCCATTGTGGCTGTGACTTGTACAACTTCCTCACCTGGCTGGAGGCCTTCAATAACGTCACACACACCTACGACCGGCTCCAGTGCGAGACCCCCAGGGAGATGTTTGGCTACCCACTCCTGAGTCCCATCGCGTCCGGCCACGCCGGGCACAACGCTCGGACGATTCTGTCCTCTGTCTGCCGGGATGGGGTCTTCATCCCCGGGATGACGTCTCTCCCGCCAGACTCAGATTCCTCCGGAATGGGCCCGGACATGTTTGACCGTGTGGGTCCGTACCACCAACCCACCACCTCGTCTTCCTCTACGGAGCACAGCTTCAGCCCCAGCATCAAGCTCCACCACGTGTCCCTCTTCACGGCCTCTATCATGGTCCAGATCCCCAGACCTTACAGCAAGATGTACATCCTGGTGCAGTACAATAACACCTTTGTCTCTGATGTCATGAATCTGAAGCTCAAGAAGGAGATGATCACACTGAACAAGCTCAAGCCACACACCAACTATACCTTCTGTGTGGCCTCCATCCGGACCTCCCAGCGCTACAACCACACCTGTCTCCAGTTCTCCACCCGAGCCCAGAACCCCGACGACATGCCGCCAACACCTTCCACCACCACCCACTACATAATGACCATCGTGGGCTGCCTCATCGGGATGCTCTGCATCCTGGGCCTCATCTACTATTgtctgaggaagaagaggaggcatGAGGAGAAGCAAAAGTCCATCTGTGTGAAGAAGACGATTCTAGAAATGAGGTATGGCCCGGAGGTGGCGGCGGCCGTGGGGAACGACCCGTCTGCGGTGCAGAAGCTCCAGGAGCAGGCCCAGGGTCAGGGCCATCACCAGTACCAGCACCACACGCACGGGGGCAAGCTACCAATGTCTGCCTCCTCCTCGGGCATGCTTCACTCCACCAACACCTCTTCCTCCAgactctcctccatccctcaggATAAGATGCCCACCGCCTTCTCTGAGGCCATGCTGACCAGCAAAGGCAACTACATGGATGTAAGGACGGAGGGGgtgatgagagatggagggatgggaggaggacagggagggatgaaggatgaGGATCTAAGAGAAGAGGACGGGACGGACGTGGGGGAGGATTCGGACGATGACGGGCGAGGCTCGGCCTCGGAGATCTCCACCATCGCCATGGAGGTGGATAAGGTCAACCAGATCATCAATAACTGCATCGACGCCCTGAAGCTGGACTCTGTCATGGCCGCCTCCTCCACTGCCTCttccgccaccaccaccacctcctaccccacctcccctccacccacCTGCACCTCCTCCTTGACCCGTGGCCTCATCCCTCTTTCCCCCGGCATCACTGAGACCTGCCCGGGCCTGCCCTCCCCTACCACCAAGATCCCCCCTCCACCGCCGCTCCCCTTCTCCGTCCCTCTCTCGGAGCGTCCGGGGATCAGTGGCGGGGGGTTTGTGTCGCCACCCTACCGGCCGCCTCCTCCTGCGTCCGCTGTGCGCCCCGTCATGAGGCAGATGAGCGCTGACGCTGCGGTGGTGATCAGTGCCGTGAAGAAGCAGTGCAGCACCTCATCCTGCAACTCCATGGGACGTGACCGGGAACGagggaccggaggaggaggccgGGTCTACAGCCTGGACATCCACGAGCCCCGCAGCCCGGACCCCTGCCAGCAGTACCCAGGGGAGAGAGGCAGCCCCGCGGGGTGTGGAGAGCCTCTGGAGCGGCTGCCTCTGGTGGGGAGCGGcgggggaggaggtgggggtggtgggtgtggtagtggaggtggtggtggtgttgatggtattaCCAACCAGCatcaccagcagcagcagcagcagggacagggacagggacaggaacagCAGGAGGACTACCACTGCTCAGAGCACCGCCACTCTGTCCCAGCTCTGTACTACGAGGGCTCCCACCAGGGCTCGCCGCACCAGAGGGCCTCCTTCCTCAAGCCCCTGACCCGCTCCCGCCGTGACGCCGCCTCCTACTCGCAGCTCTCGCCCTCCCGCCACCAAAACTACTCCGGGTACTCCTCCAGCCCTGAGTATTCCTCAGAGAGCTCTCTGAGGATCTGGGAGAGGTTCCGGCCCTACAGGAAGGGCCAGAGGGATGAGTCATGCTACGTCACGGCCGGGAACGCCTTAAGGAAGAAGGTGCAGTTTGCCAAAGGGGAGGACCTCCACGACATCCTCGACTACTGGAAGGGCGTGTCAGCCCAGCAGAAGCTGTGAAAGGAATACAGGAAGTGAGAGTGAGACATTGTGGGAATTTGAGTTTTGAGTAATGGGTCTCTTGTTGATCCCGGTGAACTGCCAATTTGAGATGCCAGccgaaagaaaagagagaaaatgaaaTGAATGAGGGTGGTGAAAGAGTTAAGTTGAGTCTGACTCATTTACAGTAGGTTTCATTGATCCATGGCAAAACATGTTATCATCAGCAGGACCAGAGCTGAGAGAGATGACAGTACAGCAGGGTCATTGTGGACTGTAGGACTACTTCTGGAACCTGCTCATCGTCTTTACAGTTATAATTAGAGACAGGGAGCCCAGGCCAACCATCCAATCAGTATTCAGTGAACACTTCATGTGGAATTCACCTGTTGGAGTGTCATTCTCTGTGCCACACTTTCATCTGTGTGTAGAGACAGGAAATCAGATGACGTATCGCCTGTTTGTGTCTGCATTGAGTGTATGCGTGTGTCATcgagtgtactgtatgtgtgtgtgtcagtgtttttgtgtgtgtgtgtgtatgagtcagTCTAAACTCCTACACATGTTTTTGGGCGCATGTAGGGCGCGGagataatgtgtgtgtctgtgttggtgaGACAGAAACAAAGTGAGATAATATacccagagagagtgagagagagagagagagagagagagagagagagaaagagagagagagagggagagagagaga
>TU1352445
atggtattaCCAACCAGCatcaccagcagcagcagcagcagggacagggacagggacaggaacagCAGGAGGACTACCACTGCTCAGAGCACCGCCACTCTGTCCCAGCTCTGTACTACGAGGGCTCCCACCAGGGCTCGCCGCACCAGAGGGCCTCCTTCCTCAAGCCCCTGACCCGCTCCCGCCGTGACGCCGCCTCCTACTCGCAGCTCTCGCCCTCCCGCCACCAAAACTACTCCGGGTACTCCTCCAGCCCTGAGTATTCCTCAGAGAGCTCTCTGAGGATCTGGGAGAGGTTCCGGCCCTACAGGAAGGGCCAGAGGGATGAGTCATGCTACGTCACGGCCGGGAACGCCTTAAGGAAGAAGGTGCAGTTTGCCAAAGGGGAGGACCTCCACGACATCCTCGACTACTGGAAGGGCGTGTCAGCCCAGCAGAAGCTGTGAAAGGAATACAGGAAGTGAGAGTGAGACATTGTGGGAATTTGAGTTTTGAGTAATGGGTCTCTTGTTGATCCCGGTGAACTGCCAATTTGAGATGCCAGccgaaagaaaagagagaaaatgaaaTGAATGAGGGTGGTGAAAGAGTTAAGTTGAGTCTGACTCATTTACAGTAGGTTTCATTGATCCATGGCAAAACATGTTATCATCAGCAGGACCAGAGCTGAGAGAGATGACAGTACAGCAGGGTCATTGTGGACTGTAGGACTACTTCTGGAACCTGCTCATCGTCTTTACAGTTATAATTAGAGACAGGGAGCCCAGGCCAACCATCCAATCAGTATTCAGTGAACACTTCATGTGGAATTCACCTGTTGGAGTGTCATTCTCTGTGCCACACTTTCATCTGTGTGTAGAGACAGGAAATCAGATGACGTATCGCCTGTTTGTGTCTGCATTGAGTGTATGCGTGTGTCATcgagtgtactgtatgtgtgtgtgtcagtgtttttgtgtgtgtgtgtgtatgagtcagTCTAAACTCCTACACATGTTTTTGGGCGCATGTAGGGCGCGGagataatgtgtgtgtctgtgttggtgaGACAGAAAC
>TU1352446
CCTTCCTCAAGCCCCTGACCCGCTCCCGCCGTGACGCCGCCTCCTACTCGCAGCTCTCGCCCTCCCGCCACCAAAACTACTCCGGGTACTCCTCCAGCCCTGAGTATTCCTCAGAGAGCTCTCTGAGGATCTGGGAGAGGTTCCGGCCCTACAGGAAGGGCCAGAGGGATGAGTCATGCTACGTCACGGCCGGGAACGCCTTAAGGAAGAAGGTGCAGTTTGCCAAAGGGGAGGACCTCCACGACATCCTCGACTACTGGAAGGGCGTGTCAGCCCAGCAGAAGCTGTGAAAGGAATACAGGAAGTGAGAGTGAGACATTGTGGGAATTTGAGTTTTGAGTAATGGGTCTCTTGTTGATCCCGGTGAACTGCCAATTTGAGATGCCAGccgaaagaaaagagagaaaatgaaaTGAATGAGGGTGGTGAAAGAGTTAAGTTGAGTCTGACTCATTTACAGTAGGTTTCATTGATCCATGGCAAAACATGTTATCATCAGCAGGACCAGAGCTGAGAGAGATGACAGTACAGCAGGGTCATTGTGGACTGTAGGACTACTTCTGGAACCTGCTCATCGTCTTTACAGTTATAATTAGAGACAGGGAGCCCAGGCCAACCATCCAATCAGTATTCAGTGAACACTTCATGTGGAATTCACCTGTTGGAGTGTCATTCTCTGTGCCACACTTTCATCTGTGTGTAGAGACAGGAAATCAGATGACGTATCGCCTGTTTGTGTCTGCATTGAGTGTATGCGTGTGTCATcgagtgtactgtatgtgtgtgtgtcagtgtttttgtgtgtgtgtgtgtatgagtcagTCTAAACTCCTACACATGTTTTTGGGCGCATGTAGGGCGCGGagataatgtgtgtgtctgtgttggtgaGACAGAAACAAAGTGAGATAATATacccagagagagtgagagagagagagagagagagagagagagagagaaagagagagagagaggg

Function

NR:

description
protein phosphatase 1 regulatory subunit 29-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558588.2 False 4393 mRNA 0.56 5 52452794 52612169
TU1352445 False 1056 lncRNA 0.52 1 52611024 52612079
TU1352446 True 979 lncRNA 0.50 1 52611180 52612158

Neighbor

gene id symbol gene type direction distance location
LOC118938557 LOC106601687 coding upstream 7796 52443989 ~ 52444998 (+)
LOC110485217 fcl coding upstream 38218 52406177 ~ 52414576 (+)
LOC110486767 alkb7 coding upstream 62779 52374824 ~ 52390015 (+)
LOC110486765 LOC106606792 coding upstream 310064 52141273 ~ 52142730 (+)
LOC110486764 LOC106606789 coding upstream 313295 52121483 ~ 52139499 (+)
LOC110486772 NA coding downstream 79 52612244 ~ 52616224 (+)
LOC118938093 NA coding downstream 73694 52685863 ~ 52688094 (+)
LOC110486774 sgsm3 coding downstream 93382 52705551 ~ 52731809 (+)
leg leg coding downstream 137679 52749848 ~ 52753917 (+)
LOC110539012 LOC106606743 coding downstream 295727 52907896 ~ 53046938 (+)
G1185887 NA non-coding upstream 49114 52403022 ~ 52403680 (+)
G1185900 NA non-coding upstream 93316 52350048 ~ 52359478 (+)
G1185898 NA non-coding upstream 105893 52346113 ~ 52346901 (+)
G1185841 NA non-coding upstream 194593 52257351 ~ 52258201 (+)
G1185788 NA non-coding upstream 206256 52244813 ~ 52246538 (+)
G1185921 NA non-coding downstream 5525 52617694 ~ 52621551 (+)
G1185919 NA non-coding downstream 9513 52621682 ~ 52624208 (+)
G1186011 NA non-coding downstream 15202 52627371 ~ 52627914 (+)
G1186014 NA non-coding downstream 24119 52636288 ~ 52636577 (+)
G1185855 NA other upstream 96853 52274330 ~ 52355941 (+)
G1185815 NA other upstream 276289 52175266 ~ 52176505 (+)
LOC110485215 LOC106606764 other upstream 383179 52014531 ~ 52091683 (+)
LOC110538743 LOC106601732 other downstream 834254 53445335 ~ 53450473 (+)
G1187452 NA other downstream 1576398 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1651897 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1679416 54272638 ~ 54300365 (+)
G1185940 NA non-coding upstream 125888 52484479 ~ 52485136 (+)

Expression


Co-expression Network