LOC118938093


Basic Information

Item Value
gene id LOC118938093
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52685863 ~ 52688094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938093
ATGGACATGAGGGTGCCTTTGGTCTCCTTATATGTAGGTCATTTACATATTCTTACGAATGAACATACTTTATTCCATAAATTCAGTCCAAAAGGGACAATCCACTCAATTAAGGTCTACGAAGACAGGAAGACCCAACGATCCTtgggatatactgtagatatatcaACTTTTACCAAAAGGATGTTGAGTCTGCCTTGGACAGTATGAAATGGAATGTGACTCATGTGGAATCAACAAGATCCTTCTCTGAAAAGAGCATCGTTGTGAATATTATCGTCAAGAATCTGGATAAGCCAAGCATTAGGGGACACATTTTATATTCTGTCCTCTAAGGTTGTTTGTGATACTAAGGGCATATCCCGAGGGTACGGTTATGTAGATTGCACAACCCAGGACGCTGTTGAACGAGCCAAGAGATTGAATGGTAAGATGTTGGCTGATGAAATAGTGAGCATTGAACCATTTAAATCATGTAAACAGCGAGAGGCTGAATTTGGATCCAGGGCCAAGGAGTTCACCTATGTGTACATCAAGAACTTTGGCATCAACATGGACGATGACAAACTGTGAGAAATGGTTGACATGATGAGTGTTTGTCTGATGTGGACTGTCATGGTTGATCACAGCATGAAATCTAGAGGATTCGGCTTCCTCAGTTTCAAAAGGAAGGAGGATGCACAGAAGGCTGTGGATCAGACAAATGAGAAGCAGGTGAACAGGAGGTGGATCTATGTGGGCCACAGCCAGAAGAAATGCGCAACAAGCTCTCACAatctcataCAGACACTTGACCTCCTGATCCAACCCCCCAATCTGGCTCCAGAAATCACATGCATGCTCGTGGAGCTGGAAAACTCTGAGCTGCTCCACATGCTGGAGTCCCCACAGACCCTGCACGCCAACCTAGactga

Function

NR:

description
hypothetical protein cypCar_00015003

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938093 True 915 mRNA 0.44 4 52685863 52688094

Neighbor

gene id symbol gene type direction distance location
LOC110486772 NA coding upstream 69645 52612244 ~ 52616224 (+)
LOC110486773 LOC106601688 coding upstream 73694 52452794 ~ 52612169 (+)
LOC118938557 LOC106601687 coding upstream 240865 52443989 ~ 52444998 (+)
LOC110485217 fcl coding upstream 271287 52406177 ~ 52414576 (+)
LOC110486767 alkb7 coding upstream 295848 52374824 ~ 52390015 (+)
LOC110486774 sgsm3 coding downstream 17457 52705551 ~ 52731809 (+)
leg leg coding downstream 61754 52749848 ~ 52753917 (+)
LOC110539012 LOC106606743 coding downstream 219802 52907896 ~ 53046938 (+)
LOC110486782 LOC106601683 coding downstream 428178 53116272 ~ 53122404 (+)
LOC110518612 LOC106601692 coding downstream 445456 53133550 ~ 53138298 (+)
G1186022 LOC100194703 non-coding upstream 25985 52659585 ~ 52659878 (+)
G1186014 NA non-coding upstream 49286 52636288 ~ 52636577 (+)
G1186011 NA non-coding upstream 57949 52627371 ~ 52627914 (+)
G1185919 NA non-coding upstream 61655 52621682 ~ 52624208 (+)
G1185921 NA non-coding upstream 64312 52617694 ~ 52621551 (+)
G1186719 NA non-coding downstream 71542 52759636 ~ 52759848 (+)
G1186726 NA non-coding downstream 75569 52763663 ~ 52763909 (+)
G1186741 NA non-coding downstream 89985 52778079 ~ 52778344 (+)
G1186747 NA non-coding downstream 96031 52784125 ~ 52784343 (+)
G1186749 NA non-coding downstream 102850 52790944 ~ 52791411 (+)
G1185855 NA other upstream 329922 52274330 ~ 52355941 (+)
G1185815 NA other upstream 509358 52175266 ~ 52176505 (+)
LOC110486764 LOC106606789 other upstream 553836 52121483 ~ 52139499 (+)
LOC110485215 LOC106606764 other upstream 616248 52014531 ~ 52091683 (+)
LOC110538743 LOC106601732 other downstream 758329 53445335 ~ 53450473 (+)
G1187452 NA other downstream 1500473 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1575972 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1603491 54272638 ~ 54300365 (+)

Expression


Co-expression Network