leg (leg)


Basic Information

Item Value
gene id leg
gene name leg
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52749848 ~ 52753917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160662.1
GAAGCCAGCTAAGCATTCTTCAGCTGTGAACATTTGCGGTTTGTACTGTCAAGATGAGTggtGTTGTGGTAAAGAACATGTCCTTCAAGGTGGGCCAGACCCTGACCATCACAGGGATCCCCAACTCTGAGGCAACACAtttTGTCATCAACGTGGGCAACAGCGAGGATGACCTCGCCTTGCACATGAACCCTCGCTTCGACGCCCACGGAGACACCCGGGCCGTGGTGTGTAATTCCTACCATGGAGGCAAGTGGTGTGAGGAGCACAGAGAGGGAGGATTCCCCTTCAACCAGGGAGAGAAGTTTAAGATAAATATCACCTTCACCAAGGAGCAGTTCCTAGTTTCTTTTCCTGACGGCTCTGAGATCCACTTCCCCAATCGCCAAGGAGACGAGAAGTATAAATACATGCACTTCGAGGGCGACGTCAGGATCCAGGGCGTCGAGATCAAGTAGACCAGTCGGAGTGGAGAAGAATCCTCCTCAATTGGATCTTTAGCTTTCTTGTCTGGCTACTCATTGGCTTTCCAGAGGTCCACACACAACAAGCCTTATTCTCTGTTTTTTTACTCACTCACCATAGTTTTAAGTTAGTTTTAATGCTGCCATTCCTAACCAATGGATGGAGCCACTAACAGTGAAACCTGCAAGTAAAATAGACATTTTACAATAGCAGCACATTACAAGCTTGGAAGTGTTGAAATGGTTTTATTGAAGATAAATGTGTCTTTCATTAATGTGGAACAATCATTCCAGATCATTCCAGAAGTGGATTAAGAAAAGTGCAAAGTATTTGTTCATTAAAATGATCTTTTTATGAACTATTTC

Function

symbol description
leg Acts upstream of or within regulation of heart contraction.

NR:

description
Beta-galactoside-binding lectin

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0090303 positive regulation of wound healing biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
K06830 LGALS1; galectin-1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160662.1 True 830 mRNA 0.45 4 52749848 52753917

Neighbor

gene id symbol gene type direction distance location
LOC110486774 sgsm3 coding upstream 18039 52705551 ~ 52731809 (+)
LOC118938093 NA coding upstream 61754 52685863 ~ 52688094 (+)
LOC110486772 NA coding upstream 133630 52612244 ~ 52616224 (+)
LOC110486773 LOC106601688 coding upstream 137679 52452794 ~ 52612169 (+)
LOC118938557 LOC106601687 coding upstream 304850 52443989 ~ 52444998 (+)
LOC110539012 LOC106606743 coding downstream 153979 52907896 ~ 53046938 (+)
LOC110486782 LOC106601683 coding downstream 362355 53116272 ~ 53122404 (+)
LOC110518612 LOC106601692 coding downstream 379633 53133550 ~ 53138298 (+)
LOC118938324 NA coding downstream 474223 53228140 ~ 53245488 (+)
LOC110538743 LOC106601732 coding downstream 691418 53445335 ~ 53450473 (+)
G1186022 LOC100194703 non-coding upstream 89970 52659585 ~ 52659878 (+)
G1186014 NA non-coding upstream 113271 52636288 ~ 52636577 (+)
G1186011 NA non-coding upstream 121934 52627371 ~ 52627914 (+)
G1185919 NA non-coding upstream 125640 52621682 ~ 52624208 (+)
G1185921 NA non-coding upstream 128297 52617694 ~ 52621551 (+)
G1186719 NA non-coding downstream 5719 52759636 ~ 52759848 (+)
G1186726 NA non-coding downstream 9746 52763663 ~ 52763909 (+)
G1186741 NA non-coding downstream 24162 52778079 ~ 52778344 (+)
G1186747 NA non-coding downstream 30208 52784125 ~ 52784343 (+)
G1186749 NA non-coding downstream 37027 52790944 ~ 52791411 (+)
LOC110486767 alkb7 other upstream 360652 52374824 ~ 52390015 (+)
G1185855 NA other upstream 393907 52274330 ~ 52355941 (+)
G1185815 NA other upstream 573343 52175266 ~ 52176505 (+)
LOC110486764 LOC106606789 other upstream 617821 52121483 ~ 52139499 (+)
LOC110485215 LOC106606764 other upstream 680233 52014531 ~ 52091683 (+)
G1187452 NA other downstream 1434650 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1510149 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1537668 54272638 ~ 54300365 (+)

Expression


Co-expression Network