LOC110485222 (LOC106601739)


Basic Information

Item Value
gene id LOC110485222
gene name LOC106601739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53093666 ~ 53107919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941473.1
CAAGGGCTAGTGGGGGAACAAGAGTGGATGTTACAGGACATCCTAGCAGAGGGTGGCGTAATTTCTCATACAGCGGCGGGTTCAGGTTCCGCACACGGATGCACAGTGGGTAGCGACTGTTGCTGAATGCGAACGGCTGCCATTTTGATCTGAAATAACTAGGATCTGTGTTTCTTTGGCGCAATAATAAATGGTTTAACTTAGTAGATACAATAGCTTTTTGCTTTCAGTTTTGACGCAAAATGCTTTCCGCAGCCCAGTTACTCGATGAGTTGATGGGTCGAGACAGAAACTTGGCCCCCGACGAGAAACGATGCAACGTACGCTGGGACCACGAGACCACCTGTAAGTACTATCTCTGTGGATTCTGCCCTGCAGAATTATTCACAAACACCCGGTCTGACTTGGGTCCCTGTGAAAAAATCCACGATGAAAACCTTAGGAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAGGGCTATGAGAGGGACTTTCTGCGCTACCTGCAGTCTCTCCTGGccgaggtggagaggaggatccgCAGGGGCCACGCCCGTCTAGCCCTGTCGCAGGCCCAGCAGGCCGCAGGACAGGGGCCTGGTGGTCCTGTGGGGAAGAACGAGGAGAAAGCTACAGTCCTGACAGAGAAGATCGAGGACCTAGTCATGCAGATCGAGGAGTTGGGCTCTGAGGGCAGAGTGGAGGAGGCCCAGGGGATGATGAAACTGGTGGAACAGCTAAAGGATGAGCGAGAGCTGCTCAGCTCCACCCCCTCGACGATTGAGACCTTTGCGGCCCAGGAGAAACAGATGGAGGTGTGTGAGGTGTGCGGGGCGTTCCTCATTGTGGGAGACGCCCAGTCCCGGGTGGATGACCACCTGATGGGCAAGCAGCACATGGGCTACGCCAAGATCAAATCCACTGTGGAGGAGCTCAAGAAGTTGAATCGGCGATCCGAAGACCCCGCCGGAGAAGACAAGGGAGAGCTAGAAAGCAAGGACTGGGAgcgtgagagggaggagagggagactaaGCGCAagttggaagaggaggagaaagagaaggagaaggagaaagagcgcgagaaggagaaggagaaagagagggagcgagtgaaggagcgggagagagagagggagcgagagagggagaagagaggaaggaggagccaCTCGAATAGCCGCCACTCCAGCCGGGCGTCGGACCGTAAGAGGAGTCGTTCCCGGGAACGCCGGCGGTCCAGGAGCAAGGAGAGGGAGCGCAAACGtagcagAAGCCGGGACAGGGACCGGGAGAGGCGGCGCAGCCGGGAGCGTTCGGACAGGAAACGGCGCTCCCGCAGCCGGGAGAGGAAGAGGTCCCGCAGCTCGGAGCGCAAGTCTCACCGCCACCGGAGCCGCAGCCGGGACAAGGACAGGACGTCCAGAGACAAAGagCGTAAGGAgccggaggagaggagaagcagCTCCAAGAAGGATGAGGTGTTAGAGGATGACAAGCCTTCCTCTGACGTGGCCAAGCCTGGGCCCGTGGAGGCTGAGGCTCCTGCCTCCACTCTGGGCCTGGCCCTTCTGGCCAGGGTCAACGGGGCTGCTCAAGACGAACTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGGCTCAGGGGACGCTGGGAAATCTGGAGGAGGAAGATCTGAAGACCACCTGTCGCTCCACCCTGAACCTGTCTCTGCGCTGCTTAAAACAAGGTGAACCACAGATGTAGTGGCTTATTAAAACAACTGTGACATCTAAATCACAACAAAAGACACGTGTGTAAAGGTGCCCTCTGTTGTCCTCCTGTTGTTTTTTTTGGAAGATCACATTTTTAGCGCAGGACCAGACATTCTTCATTCAGTTTTCCGTTGTATTTCTTTCCTTCATCGTTTCTGATATAAAGGACCTTGTCTAGTAGCTGCTGAAGTAGAATGGTACATTAAGGCTTTTATCTATGTTCTGTTGCTCATGCAGTTTTTAGGACAAATAAAAACCGTGCTTGTTTTGGTTTGTAATGTCAGGTTTCCACTCTTTCACGGTTTGACTTTTTTGGGGAAATCAGTTTGGGAAGTGTTTGTACAATGTTAGTTAGgagcatctctttctctcctctctccttcccacccACCAGATCTCACACCCACTGACTGATCTCTCTAGCCCCTTACTGTAAAATATAGTGAGATTTGAATTGATCTTTTTTTGTTCTGATTTTTAAACCTGTTCATCTTGATCAATAAAAAGAGagcttgaatgat
>XM_036941475.1
CAAGGGCTAGTGGGGGAACAAGAGTGGATGTTACAGGACATCCTAGCAGAGGGTGGCGTAATTTCTCATACAGCGGCGGGTTCAGGTTCCGCACACGGATGCACAGTGGGTAGCGACTGTTGCTGAATGCGAACGGCTGCCATTTTGATCTGAAATAACTAGGATCTGTGTTTCTTTGGCGCAATAATAAATGGTTTAACTTAGTAGATACAATAGCTTTTTGCTTTCAGTTTTGACGCAAAATGCTTTCCGCAGCCCAGTTACTCGATGAGTTGATGGGTCGAGACAGAAACTTGGCCCCCGACGAGAAACGATGCAACGTACGCTGGGACCACGAGACCACCTGTAAGTACTATCTCTGTGGATTCTGCCCTGCAGAATTATTCACAAACACCCGGTCTGACTTGGGTCCCTGTGAAAAAATCCACGATGAAAACCTTAGGAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAGGGCTATGAGAGGGACTTTCTGCGCTACCTGCAGTCTCTCCTGGccgaggtggagaggaggatccgCAGGGGCCACGCCCGTCTAGCCCTGTCGCAGGCCCAGCAGGCCGCAGGAGGGCCTGGTGGTCCTGTGGGGAAGAACGAGGAGAAAGCTACAGTCCTGACAGAGAAGATCGAGGACCTAGTCATGCAGATCGAGGAGTTGGGCTCTGAGGGCAGAGTGGAGGAGGCCCAGGGGATGATGAAACTGGTGGAACAGCTAAAGGATGAGCGAGAGCTGCTCAGCTCCACCCCCTCGACGATTGAGACCTTTGCGGCCCAGGAGAAACAGATGGAGGTGTGTGAGGTGTGCGGGGCGTTCCTCATTGTGGGAGACGCCCAGTCCCGGGTGGATGACCACCTGATGGGCAAGCAGCACATGGGCTACGCCAAGATCAAATCCACTGTGGAGGAGCTCAAGAAGTTGAATCGGCGATCCGAAGACCCCGCCGGAGAAGACAAGGGAGAGCTAGAAAGCAAGGACTGGGAgcgtgagagggaggagagggagactaaGCGCAagttggaagaggaggagaaagagaaggagaaggagaaagagcgcgagaaggagaaggagaaagagagggagcgagtgaaggagcgggagagagagagggagcgagagagggagaagagaggaaggaggagccaCTCGAATAGCCGCCACTCCAGCCGGGCGTCGGACCGTAAGAGGAGTCGTTCCCGGGAACGCCGGCGGTCCAGGAGCAAGGAGAGGGAGCGCAAACGtagcagAAGCCGGGACAGGGACCGGGAGAGGCGGCGCAGCCGGGAGCGTTCGGACAGGAAACGGCGCTCCCGCAGCCGGGAGAGGAAGAGGTCCCGCAGCTCGGAGCGCAAGTCTCACCGCCACCGGAGCCGCAGCCGGGACAAGGACAGGACGTCCAGAGACAAAGagCGTAAGGAgccggaggagaggagaagcagCTCCAAGAAGGATGAGGTGTTAGAGGATGACAAGCCTTCCTCTGACGTGGCCAAGCCTGGGCCCGTGGAGGCTGAGGCTCCTGCCTCCACTCTGGGCCTGGCCCTTCTGGCCAGGGTCAACGGGGCTGCTCAAGACGAACTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGGCTCAGGGGACGCTGGGAAATCTGGAGGAGGAAGATCTGAAGACCACCTGTCGCTCCACCCTGAACCTGTCTCTGCGCTGCTTAAAACAAGGTGAACCACAGATGTAGTGGCTTATTAAAACAACTGTGACATCTAAATCACAACAAAAGACACGTGTGTAAAGGTGCCCTCTGTTGTCCTCCTGTTGTTTTTTTTGGAAGATCACATTTTTAGCGCAGGACCAGACATTCTTCATTCAGTTTTCCGTTGTATTTCTTTCCTTCATCGTTTCTGATATAAAGGACCTTGTCTAGTAGCTGCTGAAGTAGAATGGTACATTAAGGCTTTTATCTATGTTCTGTTGCTCATGCAGTTTTTAGGACAAATAAAAACCGTGCTTGTTTTGGTTTGTAATGTCAGGTTTCCACTCTTTCACGGTTTGACTTTTTTGGGGAAATCAGTTTGGGAAGTGTTTGTACAATGTTAGTTAGgagcatctctttctctcctctctccttcccacccACCAGATCTCACACCCACTGACTGATCTCTCTAGCCCCTTACTGTAAAATATAGTGAGATTTGAATTGATCTTTTTTTGTTCTGATTTTTAAACCTGTTCATCTTGATCAATAAAAAGAGagcttgaatgat
>XM_036941472.1
ATCAAGGGCTAGTGGGGGAACAAGAGTGGATGTTACAGGACATCCTAGCAGAGGGTGGCGTAATTTCTCATACAGCGGCGGGTTCAGGTTCCGCACACGGATGCACAGTGGGTAGCGACTGTTGCTGAATGCGAACGGCTGCCATTTTGATCTGAAATAACTAGGATCTGTGTTTCTTTGGCGCAATAATAAATGGTTTAACTTAGTAGATACAATAGCTTTTTGCTTTCAGTTTTGACGCAAAATGCTTTCCGCAGCCCAGTTACTCGATGAGTTGATGGGTCGAGACAGAAACTTGGCCCCCGACGAGAAACGATGCAACGTACGCTGGGACCACGAGACCACCTGTAAGTACTATCTCTGTGGATTCTGCCCTGCAGAATTATTCACAAACACCCGGTCTGACTTGGGTCCCTGTGAAAAAATCCACGATGAAAACCTTAGGAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAGGGCTATGAGAGGGACTTTCTGCGCTACCTGCAGTCTCTCCTGGccgaggtggagaggaggatccgCAGGGGCCACGCCCGTCTAGCCCTGTCGCAGGCCCAGCAGGCCGCAGGACAGGGGCCTGGTGGTCCTGTGGGGAAGAACGAGGAGAAAGCTACAGTCCTGACAGAGAAGATCGAGGACCTAGTCATGCAGATCGAGGAGTTGGGCTCTGAGGGCAGAGTGGAGGAGGCCCAGGGGATGATGAAACTGGTGGAACAGCTAAAGGATGAGCGAGAGCTGCTCAGCTCCACCCCCTCGACGATTGAGACCTTTGCGGCCCAGGAGAAACAGATGGAGGTGTGTGAGGTGTGCGGGGCGTTCCTCATTGTGGGAGACGCCCAGTCCCGGGTGGATGACCACCTGATGGGCAAGCAGCACATGGGCTACGCCAAGATCAAATCCACTGTGGAGGAGCTCAAGGAGAAGTTGAATCGGCGATCCGAAGACCCCGCCGGAGAAGACAAGGGAGAGCTAGAAAGCAAGGACTGGGAgcgtgagagggaggagagggagactaaGCGCAagttggaagaggaggagaaagagaaggagaaggagaaagagcgcgagaaggagaaggagaaagagagggagcgagtgaaggagcgggagagagagagggagcgagagagggagaagagaggaaggaggagccaCTCGAATAGCCGCCACTCCAGCCGGGCGTCGGACCGTAAGAGGAGTCGTTCCCGGGAACGCCGGCGGTCCAGGAGCAAGGAGAGGGAGCGCAAACGtagcagAAGCCGGGACAGGGACCGGGAGAGGCGGCGCAGCCGGGAGCGTTCGGACAGGAAACGGCGCTCCCGCAGCCGGGAGAGGAAGAGGTCCCGCAGCTCGGAGCGCAAGTCTCACCGCCACCGGAGCCGCAGCCGGGACAAGGACAGGACGTCCAGAGACAAAGagCGTAAGGAgccggaggagaggagaagcagCTCCAAGAAGGATGAGGTGTTAGAGGATGACAAGCCTTCCTCTGACGTGGCCAAGCCTGGGCCCGTGGAGGCTGAGGCTCCTGCCTCCACTCTGGGCCTGGCCCTTCTGGCCAGGGTCAACGGGGCTGCTCAAGACGAACTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGGCTCAGGGGACGCTGGGAAATCTGGAGGAGGAAGATCTGAAGACCACCTGTCGCTCCACCCTGAACCTGTCTCTGCGCTGCTTAAAACAAGGTGAACCACAGATGTAGTGGCTTATTAAAACAACTGTGACATCTAAATCACAACAAAAGACACGTGTGTAAAGGTGCCCTCTGTTGTCCTCCTGTTGTTTTTTTTGGAAGATCACATTTTTAGCGCAGGACCAGACATTCTTCATTCAGTTTTCCGTTGTATTTCTTTCCTTCATCGTTTCTGATATAAAGGACCTTGTCTAGTAGCTGCTGAAGTAGAATGGTACATTAAGGCTTTTATCTATGTTCTGTTGCTCATGCAGTTTTTAGGACAAATAAAAACCGTGCTTGTTTTGGTTTGTAATGTCAGGTTTCCACTCTTTCACGGTTTGACTTTTTTGGGGAAATCAGTTTGGGAAGTGTTTGTACAATGTTAGTTAGgagcatctctttctctcctctctccttcccacccACCAGATCTCACACCCACTGACTGATCTCTCTAGCCCCTTACTGTAAAATATAGTGAGATTTGAATTGATCTTTTTTTGTTCTGATTTTTAAACCTGTTCATCTTGATCAATAAAAAGAGagcttgaatgat
>XM_036941474.1
ATCAAGGGCTAGTGGGGGAACAAGAGTGGATGTTACAGGACATCCTAGCAGAGGGTGGCGTAATTTCTCATACAGCGGCGGGTTCAGGTTCCGCACACGGATGCACAGTGGGTAGCGACTGTTGCTGAATGCGAACGGCTGCCATTTTGATCTGAAATAACTAGGATCTGTGTTTCTTTGGCGCAATAATAAATGGTTTAACTTAGTAGATACAATAGCTTTTTGCTTTCAGTTTTGACGCAAAATGCTTTCCGCAGCCCAGTTACTCGATGAGTTGATGGGTCGAGACAGAAACTTGGCCCCCGACGAGAAACGATGCAACGTACGCTGGGACCACGAGACCACCTGTAAGTACTATCTCTGTGGATTCTGCCCTGCAGAATTATTCACAAACACCCGGTCTGACTTGGGTCCCTGTGAAAAAATCCACGATGAAAACCTTAGGAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAGGGCTATGAGAGGGACTTTCTGCGCTACCTGCAGTCTCTCCTGGccgaggtggagaggaggatccgCAGGGGCCACGCCCGTCTAGCCCTGTCGCAGGCCCAGCAGGCCGCAGGAGGGCCTGGTGGTCCTGTGGGGAAGAACGAGGAGAAAGCTACAGTCCTGACAGAGAAGATCGAGGACCTAGTCATGCAGATCGAGGAGTTGGGCTCTGAGGGCAGAGTGGAGGAGGCCCAGGGGATGATGAAACTGGTGGAACAGCTAAAGGATGAGCGAGAGCTGCTCAGCTCCACCCCCTCGACGATTGAGACCTTTGCGGCCCAGGAGAAACAGATGGAGGTGTGTGAGGTGTGCGGGGCGTTCCTCATTGTGGGAGACGCCCAGTCCCGGGTGGATGACCACCTGATGGGCAAGCAGCACATGGGCTACGCCAAGATCAAATCCACTGTGGAGGAGCTCAAGGAGAAGTTGAATCGGCGATCCGAAGACCCCGCCGGAGAAGACAAGGGAGAGCTAGAAAGCAAGGACTGGGAgcgtgagagggaggagagggagactaaGCGCAagttggaagaggaggagaaagagaaggagaaggagaaagagcgcgagaaggagaaggagaaagagagggagcgagtgaaggagcgggagagagagagggagcgagagagggagaagagaggaaggaggagccaCTCGAATAGCCGCCACTCCAGCCGGGCGTCGGACCGTAAGAGGAGTCGTTCCCGGGAACGCCGGCGGTCCAGGAGCAAGGAGAGGGAGCGCAAACGtagcagAAGCCGGGACAGGGACCGGGAGAGGCGGCGCAGCCGGGAGCGTTCGGACAGGAAACGGCGCTCCCGCAGCCGGGAGAGGAAGAGGTCCCGCAGCTCGGAGCGCAAGTCTCACCGCCACCGGAGCCGCAGCCGGGACAAGGACAGGACGTCCAGAGACAAAGagCGTAAGGAgccggaggagaggagaagcagCTCCAAGAAGGATGAGGTGTTAGAGGATGACAAGCCTTCCTCTGACGTGGCCAAGCCTGGGCCCGTGGAGGCTGAGGCTCCTGCCTCCACTCTGGGCCTGGCCCTTCTGGCCAGGGTCAACGGGGCTGCTCAAGACGAACTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGGCTCAGGGGACGCTGGGAAATCTGGAGGAGGAAGATCTGAAGACCACCTGTCGCTCCACCCTGAACCTGTCTCTGCGCTGCTTAAAACAAGGTGAACCACAGATGTAGTGGCTTATTAAAACAACTGTGACATCTAAATCACAACAAAAGACACGTGTGTAAAGGTGCCCTCTGTTGTCCTCCTGTTGTTTTTTTTGGAAGATCACATTTTTAGCGCAGGACCAGACATTCTTCATTCAGTTTTCCGTTGTATTTCTTTCCTTCATCGTTTCTGATATAAAGGACCTTGTCTAGTAGCTGCTGAAGTAGAATGGTACATTAAGGCTTTTATCTATGTTCTGTTGCTCATGCAGTTTTTAGGACAAATAAAAACCGTGCTTGTTTTGGTTTGTAATGTCAGGTTTCCACTCTTTCACGGTTTGACTTTTTTGGGGAAATCAGTTTGGGAAGTGTTTGTACAATGTTAGTTAGgagcatctctttctctcctctctccttcccacccACCAGATCTCACACCCACTGACTGATCTCTCTAGCCCCTTACTGTAAAATATAGTGAGATTTGAATTGATCTTTTTTTGTTCTGATTTTTAAACCTGTTCATCTTGATCAATAAAAAGAGagcttgaatgat

Function

NR:

description
luc7-like protein 3, partial

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941473.1 False 2304 mRNA 0.53 10 53093666 53107917
XM_036941475.1 False 2301 mRNA 0.53 10 53093666 53107917
XM_036941472.1 False 2309 mRNA 0.53 10 53093666 53107919
XM_036941474.1 True 2306 mRNA 0.53 10 53093666 53107919

Neighbor

gene id symbol gene type direction distance location
LOC110486776 LOC106606809 coding downstream 352111 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 663632 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 762090 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 903963 52186557 ~ 52189703 (-)
LOC118938556 NA coding downstream 991709 52100885 ~ 52101957 (-)
LOC110538731 LOC106592182 coding upstream 138475 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 250441 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 322113 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 342635 53450554 ~ 53456191 (-)
mfsd13al tm180 coding upstream 350592 53458511 ~ 53464014 (-)
G1186993 LOC106592069 non-coding downstream 46730 53043502 ~ 53046936 (-)
G1186972 NA non-coding downstream 78389 53012004 ~ 53015277 (-)
G1186970 NA non-coding downstream 90537 53002908 ~ 53003129 (-)
G1186969 NA non-coding downstream 91567 53001849 ~ 53002099 (-)
G1186966 NA non-coding downstream 98124 52994626 ~ 52995542 (-)
G1187023 NA non-coding upstream 12012 53119931 ~ 53122809 (-)
G1187704 NA non-coding upstream 103521 53211440 ~ 53211640 (-)
G1187711 NA non-coding upstream 118715 53226634 ~ 53226850 (-)
G1187717 NA non-coding upstream 130127 53238046 ~ 53238395 (-)
G1187718 NA non-coding upstream 130535 53238454 ~ 53238695 (-)
G1186670 LOC100194703 other downstream 433857 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1063006 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1082455 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1603425 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1719712 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 499105 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 698725 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1340964 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1357614 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1491482 54599401 ~ 54600449 (-)

Expression


Co-expression Network