LOC110486782 (LOC106601683)


Basic Information

Item Value
gene id LOC110486782
gene name LOC106601683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53116272 ~ 53122404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941476.1
ACTGTTGTTACACTCAAATCTGTCCCCGATATGGGAGGAATAGTTGACAGCGCACGTCGGAGCCTTTACGCAACACAGCTACAATGTAATGGACTTTTAATTTCAAAACTCATTTAAAAGAGTTGACAAGCCGGTGCAGCAACAACATATTACATTAAACTAACCGCTGACCATTGATGGTGTCCTTTGATAAACATTGTTCCTGTTTAAGCTTAACGTTACGGACATCAACAATCTTGCGCGATCCTAGTAGCTGTAAAGCTAGCCATCTAACGTTAGTCAGTTAACGTTAGCTTCTTAGCTAACAACACTCCCCGGCTATTTTTAGTGCAATTAAGCAGCTATTTCCAGACCAAGGCGTCACCCTCTTACGACCTGTAAAGTCATTATTGTCTCCCATGATCTCGTTAAGTTAGCTAATCATTTGTACAAAATGTCAACGACATCGTTGGATAAGGAATTGCAAGAGCGCTTGAGAGAGGCGTCTGCGATTGGAGACATCGACGAGGTGCGGATTTTAGTGGAAAGCGGAGTAAATGTCAACTCTCAAAACGAAATAAACGGATGGACATGTTTGCATTGGGCATGCAAGAGAAACCACAAACCGGTTGTGTCGTACCTGCTGAACTCTGGCGCTGACCAAGAGATCCTCACTGCTAAAGATGAGCTGGCTGTCCAGCTGACCTCTAAGCCTGAAATCAGAAGACTGTTAGGAGtTGAGGAGGAGGAAGTGCCTGAAATCAAGGAGCCTGAGTTGCCAATCATCCCAAACTACCTGTCCAACCCGCCATTCATGTACAGTAAGATGGACAACAAGGCTGAGCTCATATTGGCACAGTTGACCCAAAATGGCAATGGAGACCACTCATCAGATGACCCACACAGTGACTCAGCTTCCCTGTCGCCCACCCACGAGCAACAGCTGACTCAGCAACCGCAGAGCCTACTCTCTGACACCCCGAGCCCGAGGGAGGGGGCCTTCATCCCATTGGCGCAGCAGAACGGAGTGTCGCCTAGCCCCGCCTCGTCTCTCACCGTCAACGGAGGCCTGCCTATGGACATCTCCATGGAGCCCCACCTGGTCAACCATGGGGAGTACCCACACTCGGTGGCCCATAATGGGGCTGTGTGctctcctcccctgccctcccccaGCCCCAGCACCACCAGCAGTAGCAGCCAAGCCCAGGTGGCTAACGCTAACCCATCTATGACCCGGCAGCAGTCCCTCCCTCAGCAGCTCAACTGTGGCCAGGGTGCTGGGGGTAACATGCCTGCCTTCCAGCCTTTCTTCTTTACCAGTACATTCCCTGTCAATGTGCAAGAGCTGGTCCTAAAGGTGCGCATCCAGAACCCCAACGCACGGGAGAACGACTTCATCGAGGTGGAGCTGGACAGACAGGAGCTGACCTACCGCTCGCTGCTTCGGGTGTGCTGTCGAGAGCTGGACATCAGCACTGAACACGTGGAGAAGATCCGCAAGCTGCCCAACACCATGCTACGAAAGGACAAAGACGTGGCTCGGCTGCAGGACTTCCAGGAGTTAGAGGTGGTGCTGGAGAAGGCTGAGGGCCTGGCACTCCTCTCTGGGGCGGGAGGCCTCACCGACAGACCCTGCTACAACATGAAGGCCTCCAGACTCACCTACTAGAGACCAACaggacggacagacacacagacagacagaccctgctaCAACATGAAGACCTCCAGACTCACCTACTAGAGACCAACaggacggacagacacacagaccctgCTACAACATGAAGACCTCCAGACTCACCTACTAGAGACCAACaggacggacagacacacagacagacagaccctgctaCAACATGAAGACCTCCAGACTCACCTACTAGAGACCAACaggacggacagacacacagacagacagaccctgctaCAACATGAAGGCCTCCAGACTCACCTACTAGAGACCAACaggacggacagacacacagacagacagaccctgctaCAACATGAAGGCCTCCAGACTCACCTACTAGAGACCAacaggacggacagacagaccctgatgtcCATGTGGACCCTACTATCTCTCTATTGACCGTAATAGCCACTATCGTTATTAGTCCATTTCATTGCATTATGATCCGGTGTCGTTCAGCCAGCGTTATTGGGGGTTTGTTTAAACATCCTGTTGTGTTAGCTAGGTAACGTGGTCGCCCTGCCTGTCCTTGCCTTGCTCCCTGCCAGTCTGTCCCCATGCAGCGCTCGCTAACCGATTGCTCATGCATCATGTCCTCAGTTATATACTGAAGAATTTGggtctccttccctcttctcttccctctgtccctctctctctcctccctctctagttTGTGTTGTCGGGCTACAGTGGAACATTGGCATTGAGGGACAGTGACAGTCTTCCTAGATGGCTTaacttatgtactgtacatggatCCCTTTGTACTGGGCATTAGTCATACATGTACTGGGGACTTGTCTCCTGGATGAGGAGGGGGTTGAGAAGAGTAGAGGGCATTTGAACAGCTCTTCTGATATACAGCCATGGCTCTTATTAGTCCAACATGGGCGGCTTAGTACAATGTTGCGACACAGCTGACTTGCACACAGCAACATGCAGTACTGCCGCTTGCTTAGTGGGCATAGCAGGTGGCTGCCAACGTTCCAACTGGCATTCACACCCATGCTgcagactgcacacacacacactcagtcatacTCCCACACTTCAGTGATATTTCCAGTTTTTCCTTCAGTGGTTGCCCATGTTATCACACTACCCTGTTTATTTGTTCTTAGGTGGATGCCTGATGGAGCTTTTAACAGAGATGTTGCTTTGTGCTGCTGAGGTTTGATCATCTAAGAGGGAGTGGGTGTGAGTGTTGTCTCTTGCCAATTGAGAAGTTTTTGTTAGTTTCGCAGAACTGTTTATGTGCTTAGTAAGCAAACAGATGCTTCAAGTTTCATCCGTATTGTTAAGACAATGTGTCTGTTTCTTAAAGAAGTCTCTTCGTCAGTTGGAAGATAACAGCCTTCTAACAGATTCTATGGTTAGCTAGCTCCACAGACACCGTCTGGATTCCAATCAAACACCCAATGTGGAACAATTCTTCATTGCTCCTGCTCTATGAATTtagttttattctacaatgtttacTTGCTGAAACAAAACTCATTTAGATTAACATGTATTGGGTGCAGGGGCAATATTGACATGTTCTACAGTTTGgttgaatgtttgtgtgtgtgaggggttcTTTTCAATGTAACAGTTATTGGGTCTAATATTCAACTGACACTTTCAGCTGTGAATGAATTGAATGGTAGACCGTTCCTATAGAGTTCAGGTATTATTGATTTAAGCAGAATCCGCTAGGTTCACTTTAGGGGAAGTATATTCCCAGCTCAAGTAGGGGTTCCCCTAAAATGAGCATTTTAAACTGTTTCTGGATCGCTTCACTTAAGATACTTCCATTTACTGTGATTAGATCAAAACCAAATACAAACCTAGACAGAAACATAGTCTGGTTCTCCACAATAGATTATCTATCATAAATGTCCTATTTTTGAATTGCTGTATGAAATGTTTTTTCGGGGTGAACTGAATGACGTGGGCAAAGGACAGTTTGAAAGGATGGTTTCTGTTTCATAAGTTTGACACGGCTGTTATGTTTGAGTTCTTCTATAACACGTTTCCCAGCCATTCTCCCTGTTGCTTCTATCATACAGTGCATTTGTCATAATACACAAGATCACACTGCTCTGTGAGAACATTTTAAACACATAACCTACATTAACATGTAAGCTAGCTAGAGATCAAATGTTAGCTCTTGAGGGGTCCCCGAGTTTAACCTACTGACTTTTGTCAAGTTGTGGTGTTTGCTACTTCTTTGTTTGAGAATAAATGACGATTCATACACAAGAACACAACCGTTAGTAGTGAAGCTGAATGAGAGTGCATTGATTGAAAAGATTACTGCTGAAAA

Function

NR:

description
ankyrin repeat domain-containing protein 40-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941476.1 True 3992 mRNA 0.47 5 53116272 53122404

Neighbor

gene id symbol gene type direction distance location
LOC110539012 LOC106606743 coding upstream 69334 52907896 ~ 53046938 (+)
leg leg coding upstream 362355 52749848 ~ 52753917 (+)
LOC110486774 sgsm3 coding upstream 384463 52705551 ~ 52731809 (+)
LOC118938093 NA coding upstream 428178 52685863 ~ 52688094 (+)
LOC110486772 NA coding upstream 500054 52612244 ~ 52616224 (+)
LOC110518612 LOC106601692 coding downstream 11146 53133550 ~ 53138298 (+)
LOC118938324 NA coding downstream 105736 53228140 ~ 53245488 (+)
LOC110538743 LOC106601732 coding downstream 322931 53445335 ~ 53450473 (+)
LOC110538736 LOC106606748 coding downstream 333932 53456336 ~ 53458621 (+)
cdr2a LOC106606747 coding downstream 341806 53464210 ~ 53478284 (+)
G1186896 NA non-coding upstream 20082 53093672 ~ 53096190 (+)
G1186924 NA non-coding upstream 32445 53083497 ~ 53083827 (+)
G1186893 NA non-coding upstream 115341 53000700 ~ 53000931 (+)
G1186892 NA non-coding upstream 115714 53000355 ~ 53000558 (+)
G1186889 NA non-coding upstream 130839 52985213 ~ 52985433 (+)
G1187043 NA non-coding downstream 47708 53170112 ~ 53184821 (+)
G1187054 NA non-coding downstream 65162 53187566 ~ 53194540 (+)
G1187069 NA non-coding downstream 84318 53206722 ~ 53206986 (+)
G1187098 NA non-coding downstream 159104 53281508 ~ 53281755 (+)
G1187099 NA non-coding downstream 160491 53282895 ~ 53283193 (+)
LOC110486767 alkb7 other upstream 727076 52374824 ~ 52390015 (+)
G1185855 NA other upstream 760331 52274330 ~ 52355941 (+)
G1185815 NA other upstream 939767 52175266 ~ 52176505 (+)
LOC110486764 LOC106606789 other upstream 984245 52121483 ~ 52139499 (+)
G1187452 NA other downstream 1066163 54188567 ~ 54198015 (+)
G1187390 NA other downstream 1141662 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 1169181 54272638 ~ 54300365 (+)
G1188344 NA other downstream 1871270 54993674 ~ 54997295 (+)

Expression


Co-expression Network