LOC110538745 (LOC106606750)


Basic Information

Item Value
gene id LOC110538745
gene name LOC106606750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53450554 ~ 53456191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625707.2
GCCCCCTTCCACGTCGACTTGCCCTATCGCCATATTTCAACTCGTTGCATCAAAAAAGGGATAGTGAAGCCGGTTAAATAAGTTAGCTAGAAAGCTAGTTTAAACCAGGAAAAAGTTAACAGAAGACTTTAAGTCATTTTCACCGGTGTCAAAAGAAGGCATCAGCTCTAGCAATGAACATCTTCAGGTTAACGGGAGACCTCTCTCACTTGGCAGCTATCATCATTCTCCTGCTGAAAATATGGAAAACCAGGTCGTGTGCTGGTATCTCTGGGAAGAGCCAGATCCTGTTTGCTTTGGTCTTCACTACTCGTTACCTGGACCTCCTCACCTCTTTCATTTCCCTCTACAACACCACCATGAAGGTGATCTACATTGGTTGTGCCTACGCCACTGTCTACCTGATCTACATGAAGTTCAAGGCCACCTATGATGGGAACCATGACAGCTTCCGAATGGAATTCCTGGTGGTTCCTGTAGGGGGCCTCGCCTGCCTGGTCAACCATGACTTCTCTTTCCTAGAGATCCTGTGGACATTCTCCATCTACCTGGAGTCGGTGGCCATCCTGCCCCAGCTCTTCATGATCAGTAAGACGGGCGAGGCGGAGACCATCACCACCCACTACCTGTTTTTCCTGGGTCTCTACCGGGCCCTGTACCTCTTCAACTGGATCTGGCGCTTTTACTTCGAGGGTTTCTTCGACATGATCGCCATTGTGGCCGGCATGGTGCAGACCATCCTCTACTGTGACTTCTTCTACCTTTATGTCACCAAAGTGCTGAAAGGAAAGAAGCTGAGCCTGCCAGCATGAGAGGTTCAGACGGAGACCCCGTGTCTTCCAGCAGACTCAGGGTGCgtggagatgacatcacagaacCCCGCCGAGCAAGATGCCTGAGAGACAGAGCGACTCAAGGGGGAAAACACTAGTCTTCTTCATGAATAACTTTGAACTGGTAAACAACAAACGGCTCAAACTGAATGAGAGGTCATCCCAGGTCTTCACGCAGTCATCAGATATCTATTTTTAGCATATTGCCTTACCTTTTCTCATTGCTGTTCAAAAAATAGACATGTGAGGTGTGCTCTTTGATGGCTCAATATGCATTGTATTGATTAGGGTTGACTCAATACAAAGTACCATGCCAAACttcaaaatgaaatacaaaaatgtaGTCTTTATGATTAAGATGGAAACGATGTGTCAAGGAGTATTATGTAATGATTTTATGTCTTGCTATTTTTTCATACATTGTTTTTACATGACTGTACCCCCTTGGCCAATTTATTATTCACAACTACATTTACTTGTGTTTTGTAGGTGCTCTTTCATTTGGATATCTCAGTTTGCACTCCTCTCTTGAAAAAGTAATCCTGCAAAGCCCACTTCTGGGTTCTTGTGTTTATAGAACCCTTTgcccaatatatatttttttttccagTTGCCCTTTTTGACATTTTTGGTAAAATTCCCTTCACTGCAGTTGTCAAATTTGAAAGCATAAATTCTTCATCTTGGTGTCCTCCATTTATGTACATACTTGCCTTTCTAAGATGAAGTTCCCATCTTAACATGATACATATCACCTTTCACATCCCCAACCAAAAGAAGAGTTTATTGCATTACTTAGGCCCAGGCTCAGCTTGTTCAACATTGGATGATTGTAAGTAATTTAGGGGTCCGTATCAGTAAATGTGCTTCCCGACAGGGCTATTTGGTTTGTTTTCAATGCAGTCATAGACTAAGGTTAATTTGATTGAATACTGTAATCACCTTACATGGTCAGTTTGTTTAGCTGTTTAAATTAAGATGCAGTCATTTGTCACAGAGGTAAAAAGACCCATTGAAATATACATGATATTCTAGAACAGTGTTCAGGGGGAATGCGTGTGAGATATGGTGTTTGGTATAGATGCATTTGAGTTAAATGTTGAGATTTGACCCATTTTTCCAGCTAAATAAACCCCTATAGTCTTTTCATTTGTCATTCCTATAGCTTCTTTTGTTTTAAGTTGCATGATAACTGTGATACAACCTCGCCTCCAATAAACTTTTTATGAAAAAG

Function

NR:

description
PREDICTED: ER lumen protein-retaining receptor 2-like

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0015031 protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625707.2 True 2067 mRNA 0.42 5 53450554 53456191

Neighbor

gene id symbol gene type direction distance location
LOC118938325 LOC106606746 coding downstream 10479 53430032 ~ 53440075 (-)
LOC110539023 LOC106601728 coding downstream 32824 53358360 ~ 53417730 (-)
LOC110538731 LOC106592182 coding downstream 200178 53246394 ~ 53250376 (-)
LOC110485222 LOC106601739 coding downstream 342635 53093666 ~ 53107919 (-)
LOC110486776 LOC106606809 coding downstream 708999 52730378 ~ 52741555 (-)
mfsd13al tm180 coding upstream 2320 53458511 ~ 53464014 (-)
LOC118938683 NA coding upstream 27063 53483254 ~ 53483362 (-)
LOC118938680 NA coding upstream 29595 53485786 ~ 53485904 (-)
LOC118938648 NA coding upstream 30882 53487073 ~ 53487191 (-)
LOC118938659 NA coding upstream 32169 53488360 ~ 53488478 (-)
G1187808 NA non-coding downstream 7255 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 95104 53308264 ~ 53355450 (-)
G1187736 NA non-coding downstream 163708 53286428 ~ 53286846 (-)
G1187735 NA non-coding downstream 164624 53285703 ~ 53285930 (-)
G1187734 NA non-coding downstream 166440 53283420 ~ 53284114 (-)
G1187821 NA non-coding upstream 25508 53481699 ~ 53481969 (-)
G1187823 NA non-coding upstream 91096 53547287 ~ 53547497 (-)
G1187826 NA non-coding upstream 92908 53549099 ~ 53549316 (-)
G1187779 NA non-coding upstream 237037 53693228 ~ 53697259 (-)
G1187893 cyth3 non-coding upstream 329076 53785267 ~ 53786453 (-)
G1186670 LOC100194703 other downstream 790745 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1419894 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1439343 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1960313 51489777 ~ 51490241 (-)
G1186075 NA other downstream 2076600 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 150833 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 350453 53806640 ~ 54049592 (-)
G1188147 NA other upstream 992692 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1009342 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1143210 54599401 ~ 54600449 (-)

Expression


Co-expression Network