LOC110538736 (LOC106606748)


Basic Information

Item Value
gene id LOC110538736
gene name LOC106606748
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53456336 ~ 53458621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941491.1
TGAAGATCAGCGAACAGATTGATTCTCACATCTCGCTGATGCTGCAACACGAGAAGACAGTTTTGACTGACAACTGTGAGAGAATTTGTTTGGGATTACAACACCAAACACATAATGATGAGATACTTGGTAAACAGGATGGAAAACTGAGAGAAGTGAAAACATCCATCTTCCTGTTCTGTCTATTGCACACTTAAGTCATGAGATcacagcgcgcacacacacatatcgtGTCAACATTATGTTTTCATCAGAACGGATTTGTCAGTGTTCTCCTCTATCACGCTAATTAATCTCGACAGCCGTCATCATGGAGAAGAAGGAAAACTGCCCCCCAGGGTTATCGTTACACCAGCCAGACGATATCATTTGGCGGATAGGGGGTCAGTCAGCCTCTCTCCCCTGTAACATCGCATATGATACCAATAGGAACATTGATTTCCTCTGGTTCGTCTTCAAGCAGGACGCTCACCACTCGGTCGATCTGATAACCCAGCAACACAAATACAGCCTGGAGAGAAACAGCCTAAATATCAACTCACTCCAGGCCAATGACAGCGGGGTGTACCACTGTGCTGCCTTGTTTAGAGACGTGGTATGCAGCGGGGCACAGGAGATAGGGCAGGGCACCACGCTGGTGGTGAGAGAGAGGGGCGTGCAGATGACCTGGCATGTTTTGCTGTGGCTGCTGTTTGTCCTGTTAGTCTTGTACAGTCTGGCAATACTGATTCTGATCATTCGTAAGAAGAAGAATAAAGTTCGAGTACAGTTTGGTGCTGTTGTGCAAGAGCTGTACGGTAAGAGGAACTTACGAAGTAACAAGAAAAACCCCAACCACAGTGGCCCTGCTCAAAACAAGGTTGAAAGCCCCCACTCCAACCATCCAGAGGACATTTACCAAAACCAGtgactcaacaaaaagaagaaccACTAATGACAGCTACTTCCCTACACAGACTGATCTTCAGGCGGGAGACTATAAACGAAGGACACTGCTGACCTGCAAAACGACTAACCAAAATCTAAAACTGACCCTTAGCTTAACCAAAGAGAGTAACCAGACAAAAACAATCTCGATTTATTGATAAACTTCAAATTAATCAGAAAGAAAAACAGAAGTCCCTCTACTGAATCTGAAGTTCACCTATTTGAATatccacattttttttgtccatg
>XM_036941490.1
GAAGATCAGCGAACAGATTGATTCTCACATCTCGCTGATGCTGCAACACGAGAAGACAGTTTTGACTGACAACTGTGAGAGAATTTGTTTGGGATTACAACACCAAACACATAATGATGAGATACTTGGTAAACAGGATGGAAAACTGAGAGAAGTGAAAACATCCATCTTCCTGTTCTGTCTATTGCACACTTAAGTCATGAGATcacagcgcgcacacacacatatcgtGTCAACATTATGTTTTCATCAGAACGGATTTGTCAGTGTTCTCCTCTATCACGCTAATTAATCTCGACAGCCGTCATCATGGAGAAGAAGGAAAACTGCCCCCCAGGGTTATCGTTACACCAGCCAGACGATATCATTTGGCGGATAGGGGGTCAGTCAGCCTCTCTCCCCTGTAACATCGCATATGATACCAATAGGAACATTGATTTCCTCTGGTTCGTCTTCAAGCAGGACGCTCACCACTCGGTCGATCTGATAACCCAGCAACACAAATACAGCCTGGAGAGAAACAGCCTAAATATCAACTCACTCCAGGCCAATGACAGCGGGGTGTACCACTGTGCTGCCTTGTTTAGAGACGTGGTATGCAGCGGGGCACAGGAGATAGGGCAGGGCACCACGCTGGTGGTGAGAGAGAGGGGCGTGCAGATGACCTGGCATGTTTTGCTGTGGCTGCTGTTTGTCCTGTTAGTCTTGTACAGTCTGGCAATACTGATTCTGATCATTCGTAAGAAGACTGGGAAAGACATTGCCGTTTGCAGAGGCACACAGAAGAGTGACATCCAGAAGAATAAAGTTCGAGTACAGTTTGGTGCTGTTGTGCAAGAGCTGTACGGTAAGAGGAACTTACGAAGTAACAAGAAAAACCCCAACCACAGTGGCCCTGCTCAAAACAAGGTTGAAAGCCCCCACTCCAACCATCCAGAGGACATTTACCAAAACCAGtgactcaacaaaaagaagaaccACTAATGACAGCTACTTCCCTACACAGACTGATCTTCAGGCGGGAGACTATAAACGAAGGACACTGCTGACCTGCAAAACGACTAACCAAAATCTAAAACTGACCCTTAGCTTAACCAAAGAGAGTAACCAGACAAAAACAATCTCGATTTATTGATAAACTTCAAATTAATCAGAAAGAAAAACAGAAGTCCCTCTACTGAATCTGAAGTTCACCTATTTGAATatccacattttttttgtccatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941491.1 False 1176 mRNA 0.45 5 53456336 53458621
XM_036941490.1 True 1226 mRNA 0.45 6 53456337 53458621

Neighbor

gene id symbol gene type direction distance location
LOC110538743 LOC106601732 coding upstream 5863 53445335 ~ 53450473 (+)
LOC118938324 NA coding upstream 210848 53228140 ~ 53245488 (+)
LOC110518612 LOC106601692 coding upstream 318038 53133550 ~ 53138298 (+)
LOC110486782 LOC106601683 coding upstream 333932 53116272 ~ 53122404 (+)
LOC110539012 LOC106606743 coding upstream 409398 52907896 ~ 53046938 (+)
cdr2a LOC106606747 coding downstream 5589 53464210 ~ 53478284 (+)
trnal-uag-2 NA coding downstream 86862 53545483 ~ 53545564 (+)
LOC110538749 LOC106580644 coding downstream 167413 53626034 ~ 53634165 (+)
LOC110515633 LOC106601742 coding downstream 200149 53658770 ~ 53662221 (+)
LOC110486792 LOC106601749 coding downstream 231839 53690460 ~ 53694370 (+)
G1187192 NA non-coding upstream 13516 53442564 ~ 53442820 (+)
G1187173 NA non-coding upstream 28296 53427418 ~ 53428040 (+)
G1187167 NA non-coding upstream 35294 53420774 ~ 53421042 (+)
G1187163 NA non-coding upstream 43235 53411591 ~ 53413101 (+)
G1187151 LOC106601727 non-coding upstream 59305 53391858 ~ 53397031 (+)
G1187245 LOC106606732 non-coding downstream 183279 53641900 ~ 53653613 (+)
G1187253 NA non-coding downstream 209795 53668416 ~ 53669862 (+)
G1187259 NA non-coding downstream 217888 53676509 ~ 53766636 (+)
G1187244 NA non-coding downstream 254503 53713124 ~ 53716000 (+)
G1187271 NA non-coding downstream 257685 53716306 ~ 53720111 (+)
LOC110486767 alkb7 other upstream 1067140 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1100395 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1279831 52175266 ~ 52176505 (+)
G1187452 NA other downstream 729946 54188567 ~ 54198015 (+)
G1187390 NA other downstream 805445 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 832964 54272638 ~ 54300365 (+)
G1188344 NA other downstream 1535053 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1662640 55121261 ~ 55122619 (+)

Expression


Co-expression Network