cdr2a (LOC106606747)


Basic Information

Item Value
gene id cdr2a
gene name LOC106606747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53464210 ~ 53478284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941489.1
TCTCCGGCTGCGCAGATTGCCACGTTGCTGCAGAAAGACACCAGAGGATATTGTCTGGTCACTCCAGGCTGTTTATCACACCGGTGTTTTACGATTCTGCCGGGTGGAGCGTGCACTCTATTGGAATAAAATTGTCAGTGGAAATGCTGACCGATATGATAGTGGAGGAAGAGTTTGAACTCAAGGATGAGGAGCCATGGTATGGCAAACAGGACCTTGAGCACGATCTCCATTTGGCGGCTCAGCTGGGTAAGACCCTGCTGGACCGGAACCATGAGTTGGAGCAGGGGCTGCAGCAGATGTACTCCACCAACCAGGAGCAGCTGCAGGAGATTGAGTACCTGACTAAGCAGGTGGATTTGCTGAGGCAAATGAATGACCAGCATGCTAAGGTATACGAGCAGCTAGATGTGGCGGCCAGAGACCTGGAGCAGGGCAACCACAGGCTGATTCTGGACAACCGCGTCGCCCAGCAGAGGATCAACTGcctgacAGAAACGATCAACAGTCTTGAGACCCACATGGAGGACTTGCAGACCCAGGTGGAGGAGCTGAGGACAGCCCAGTCTGACCGGAGCAGGAGAGAACTGGCCGAACAGAGACACAATCTCGGAGCACAGAGTGTGTCCTGCCTCAAGGAGCTGTATGACCTGCAGAAAGACAAGTACATGGCCTATGAGAGCCTGCGTGTGGAGCATTCCTGGCCAGCAAGGAAGGAGTCCTGTCAGGACCCAGACCCCGATGAGGAGAACTCTGTGCTCCAGCGCTCCATCCAGACCCTGCAGGCTGTTCTGGCCTCTGAGCGGGGGAAGCGGGAGGCAGCGGAACAGGAGACTGAGCTGACTGCCAGGGAGAACGGGGCTCTGGAGCAGCGGCTGGCCCTGCTGGAGGGCTGCCGGGCTAGGCAGAGGGAGCTGGAGGCAGAGGTGGAGGAGCTACGGCAGCTGTGGCAGGCCGACTACGCCAACAGCGTCAGGAGACCTGACCGGCTACTGCTGCCTGACACTGTCTTCTTCGCCCCAGAGGAGAAGCCCAGTCTGGTACAAAAGGAGGAGGAAGTGGGGGAGCAGGGGAGGCGCAGCCTGCAGAGGTGCAACAGCGAAAGTGTTCTGAAGGGGACACTAGCAGACGACATCCGGCGGGGGCATGAACGTACATGTATCAGAAGAGCAGAGGCGGTGAAGCAGAGAGGAATCTCCCTGCTCAATGAGGTGGACGCCCAGTATAGTGCACTGCAGGTCAAATACGAGGAGCTTCTGCGGCGCTGCCAGCTGGGGGCAGACGGGCTCAGTCACAAGGCCGTGCAGACACCCCACAGTTCCCACGGCACTGTCAGTTACCCCCAACGGCGCCTCTCAAGCTCGGCCACCTCCATCGGGCTCCCAGCTGTCCCAGAAGACAACGGGCCTCAGCCGGAGTACAAGGCCCTTTTCCAGGAGATCTTCACCTGCATCCAGAAGACCAAAGAGGACCTAAGTGAGAACAAGTGGCCGAGTCCGGGTCATTGACTCTGGGGACAGTGATGGCAGTATGTGTTCTTTCTGCACCTTTGAATGGACTGCTCAATAGGATATTGCTATAGGAGAGGGCCTCAAATAGCAGATTCCAAagggtgttttgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgtgcaCTAACACCTGTACCTCTTATACAACATGTGCCCTGTTGTCTCCTTCAATCCTGTCAACGCTATCACCTCGACACGCTCCAATGGTTTCATAAGCACTTTTCTTATCTACCGTCCATCCCTTTGACTACTTTCCATCCCTATCTACAAGTTTGTTTTTGACGCAAACATTTCCAGGTCAAAGGTTGATAAATGGATTGTTTGAGTCCTGATGCTATCACCTCTTAGCATCCGACTGCTCTTATGCCTCATTTAGCTCGATTAGATGGCACCACCTCTTCACTTGAAGTCAATGGGTGCAGTAATATTAGCAACCAGGGTTTTTCTATTCTTTTGTTTTCTACTAAATTCAAGTAACCATAGCAATTAGAATGGTATGTGTATGTACCATAGATTTGGTCTTGCAGCTTAATGAGTAGGCCTACGCTGGGTTTGAAAGTGTTTGTTTGTACGCTGTTACCACGTACAGAACCACCACTGTACAGATCTTGGACTTGCTTAGACTATCTAGCAGTCTGTGTTCAATCCACTTAGTGTTAAGTCTGTCGTGGGAGCCATACCTTTTGTGCAcactgtacatattgccaaattATAGATTTAACTACATTTGTGTACCTTTTTATTATGCCAA

Function

NR:

description
cerebellar degeneration-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941489.1 True 2282 mRNA 0.53 7 53464210 53478284

Neighbor

gene id symbol gene type direction distance location
LOC110538736 LOC106606748 coding upstream 5589 53456336 ~ 53458621 (+)
LOC110538743 LOC106601732 coding upstream 13737 53445335 ~ 53450473 (+)
LOC118938324 NA coding upstream 218722 53228140 ~ 53245488 (+)
LOC110518612 LOC106601692 coding upstream 325912 53133550 ~ 53138298 (+)
LOC110486782 LOC106601683 coding upstream 341806 53116272 ~ 53122404 (+)
trnal-uag-2 NA coding downstream 67199 53545483 ~ 53545564 (+)
LOC110538749 LOC106580644 coding downstream 147750 53626034 ~ 53634165 (+)
LOC110515633 LOC106601742 coding downstream 180486 53658770 ~ 53662221 (+)
LOC110486792 LOC106601749 coding downstream 212176 53690460 ~ 53694370 (+)
LOC110486793 LOC106601743 coding downstream 229039 53707323 ~ 53712693 (+)
G1187192 NA non-coding upstream 21390 53442564 ~ 53442820 (+)
G1187173 NA non-coding upstream 36170 53427418 ~ 53428040 (+)
G1187167 NA non-coding upstream 43168 53420774 ~ 53421042 (+)
G1187163 NA non-coding upstream 51109 53411591 ~ 53413101 (+)
G1187151 LOC106601727 non-coding upstream 67179 53391858 ~ 53397031 (+)
G1187245 LOC106606732 non-coding downstream 163616 53641900 ~ 53653613 (+)
G1187253 NA non-coding downstream 190132 53668416 ~ 53669862 (+)
G1187259 NA non-coding downstream 198225 53676509 ~ 53766636 (+)
G1187244 NA non-coding downstream 234840 53713124 ~ 53716000 (+)
G1187271 NA non-coding downstream 238022 53716306 ~ 53720111 (+)
LOC110539012 LOC106606743 other upstream 441229 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1075014 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1108269 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1287705 52175266 ~ 52176505 (+)
G1187452 NA other downstream 710283 54188567 ~ 54198015 (+)
G1187390 NA other downstream 785782 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 813301 54272638 ~ 54300365 (+)
G1188344 NA other downstream 1515390 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1642977 55121261 ~ 55122619 (+)

Expression


Co-expression Network