sdr42e2 (LOC106601735)


Basic Information

Item Value
gene id sdr42e2
gene name LOC106601735
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53551060 ~ 53564666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941499.1
CCGAATTCCATCTATCCCAAGAGGAGTCTGAATGGAGTTGTGTGGCCCCGGTATGAAGGACAACAGAGGCTCTCTGTGCCAGGTAGAGCAGCTGCCCTACCCCTGTGTCCCCCTGCCTGTCCCAGGAAGTGCTGGGTGCCGTATACAGGCTAATAGACAtctccacaaccaccacctcaaccatCAGCTCCAGTCCTGGGTGAGCCGACCAGCCCCagacctaacctcaaccccaacTCCAGCCTCCCGACACAGGACCAATGGGGTGGTGGGTGCCTGGTGCAGCAGCCCAGAGTGTCCAGCCTCCCGCCTGGATGAAGTGACTGATCAGGCCTTGAGAGGGGCAGGGATGGGGACAGGCAGGGTGCTGGTGACCGGGGGAGCAGGTTATTTCGGGTTGAGGCTTGGGAGAGCTCTGGTCAGCCAGGGAGTGTCTGTGGTGCTGCTGGATCTTCACAAGCCACAGTGGGATACTCCAGACGGTACTGTCTTCCATCAGAGCGACATCCGGGACTATGATTCTCTGTATAAGATCTGTGAGGGGGTCGACTGTATATTCCACACCGCTTCCTATGGGATGTCAGGCCCAGAACAGCTGAGGAAAGAGCAGGTGGAGTCGGTCAACGTCGGAGGGACGAACAACGTCATTAATGtgtgtgtggagAAGGGCATCACCAGGCTGGTCTACACCAGTACGATCAACGTGACGTTTGCTGGCAAACCCATAGAGGAGGGCGACGAGGACTCATTGCCCTGTGTGCCCCTGGACATGCACATAGACCACTACTCCAGGACCAAATCTATCTCTGACCAGATGGTCCTAACAGCCAATGGACGCTCACTCAAAGGTGGGGGTCTCTTGCGGACCTGTGTTCTGAGACCCTCAGGCATCTACGGGCCAGAAGAGAGACGACACCTACACAGGGTTATGgTGAATGTGGAGCGCCGGTTGTTCAGTTTTAGCTTTGGAAACCGCCAGGCTAAGATGAACTGGGTCCATGTGGACAACCTGGTGTTGGCCCACATCCTGGCTGCTGAGAGCCTCACACCCAAGAGGAACTGTGTGGCTAGTGGACAGGCCTACTTCATCAATGACGGGGAATCTGTCAACCTGTTTGAATGGTTAACACCACTGtTTGAGAAGCTGGGGTACAGCCGACCGTTGATACACTTGCCTGTCTCACTGGTCTATTCAGCAGCCATTCTGATGGAATGTTTACACCTGGCTCTGAGGCCAATAGTGGAGATCCCTCTGCTCTTCACCAGAAATGAGGTGAGGAACATTGCAGTGAGCCACACCTTCAAGATCGAGAAGGCCCGTCGAGACCTGGGCTACTGCCCCAGACGCTACAGCCTGGGGGACTCAGTGGACCAGTACATACGGTCCCGACCATCCCGCTCCAGGCCCTCCCCCCTAGGCCCCTCTCGGACTGTTCCCCTGCTCCTGCTGGTGTTGGGGTTCAGCCTGGCTGTCCTCCTACTTTGCTCCTGGCCCTGGGATCACTAGGTAGCTACTGTGGCTAAAACTTAAGTAACAGCCCACTAAGACCCAACCCAAATCAAACACAGCTAATGCACTCACTAATACGTTTTATTTGTTAGCCGCCTTTCTGGACACCTATGGTCTTGGCCTTACATCAAGCTAAAAGCAATGATAGAAAGCATGCATAGTGTACATCTAGATACACATAGAAGACCACATGAATATAACACATACTGTTGACCTAATGCTAGCAACTCCTCCCTTCTATAATGTTTATCATGGTATATCATGTTATCATACAGTTGACTAAGGCTGTAGATGGATGATTATCAAATGTATAGTATGTAGAATATTTGAAATAATATGGTGCTTTGTTCAAACCCTATTGCCTTCCATAGGGCGGAGTATATCATATCTCTGGGTTTATTTTCTTGAGAAAGAGGTTCTAATATATTGAACCAGAGAATCATAATgtgaatacagtacagtacagtacagacttAAAAAGTACTACATGGTATGACTTTCTGTGAAATTAGAAATTTAACATTTTAGTTTTAGTAAAAAGGATTCCTCTTTGCATTgatgtttata

Function

NR:

description
PREDICTED: putative short-chain dehydrogenase/reductase family 42E member 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941499.1 True 2077 mRNA 0.51 11 53551060 53564666

Neighbor

gene id symbol gene type direction distance location
LOC118938676 NA coding downstream 7562 53543380 ~ 53543498 (-)
LOC118938675 NA coding downstream 8822 53542120 ~ 53542238 (-)
LOC118938674 NA coding downstream 10081 53540861 ~ 53540979 (-)
LOC118938673 NA coding downstream 11334 53539608 ~ 53539726 (-)
LOC118938672 NA coding downstream 12592 53538350 ~ 53538468 (-)
vwa3a vwa3a coding upstream 1797 53566463 ~ 53597472 (-)
mosmoa C20H16orf52 coding upstream 42355 53607021 ~ 53638313 (-)
LOC110486787 LOC106606732 coding upstream 77228 53641894 ~ 53658826 (-)
LOC110515632 LOC106601741 coding upstream 98836 53663502 ~ 53679228 (-)
LOC110486790 LOC106606738 coding upstream 115430 53680096 ~ 53690204 (-)
G1187826 NA non-coding downstream 1744 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 3563 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 69091 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 107761 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 195610 53308264 ~ 53355450 (-)
G1187779 NA non-coding upstream 128562 53693228 ~ 53697259 (-)
G1187893 cyth3 non-coding upstream 220601 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 227641 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 312860 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 314192 53878858 ~ 53879075 (-)
G1186670 LOC100194703 other downstream 891251 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1520400 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1539849 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2060819 51489777 ~ 51490241 (-)
G1186075 NA other downstream 2177106 51352309 ~ 51373954 (-)
si:ch73-374l24.1 LOC105026133 other upstream 241978 53806640 ~ 54049592 (-)
G1188147 NA other upstream 884217 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 900867 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1034735 54599401 ~ 54600449 (-)

Expression


Co-expression Network