LOC110538749 (LOC106580644)


Basic Information

Item Value
gene id LOC110538749
gene name LOC106580644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53626034 ~ 53634165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035599.1
AGCCTACTGTAACTGTGCTTGCTCTACTAAAACAAGGCTAACCAAGACAGTTATCCAAACCTTATGCCCCAATAGCACGCAAGGAAGCAACAGGGATACTTTGGCTGTACAAGGACGAGGCCAAATTAAGAGCTATTTCCAGATGTACGCTTTTAAATATCAAATTTTCAATAGCACGGATTTGtttaaacaacaaaaacaatttcCTCAATTGTACCTCAGCGCAAAGGTTGTTTCGTCAGAACAGAGCGATCAGAACAGAACATTTTCACAGCAGTGGGAGGGCTTGGCACCGCTTGCTGGCTTTGCCATTTAGAAGTAGACCAGAAATCACTCTAAAAACAGCCACCGACACGacctatcactgagagagacaaTCAGCCGTCCATGTCAACACACCGATGAATAGAACAGaagagtgtgagagacagagcgggagagagataagagagATGGTGACAGAGACATTCTGAAGACAACAGGATCTACAGGAGGGCAGAGGGCTGCAGGCAGATTCACAGTTGTCTCCGTGACACTGACACTGCCAGTAATAATGGGCTTTGTGTAGAAGCCCAGGCAGGAAATGAAGTTTACTGTGATTGCTTGGGAACGTCACACAGAGGTGAGGACAGGGTCTTTTCAGCTGGAGAGACAACATTTCTCCTCCTTTTGTGCCAGTGGTTGTCGTGGTCCCCAAACGTCTCTGTGTTGCCCTGGGCCAGGAGTTGTTCCTAGTCAGGTTACGTAGTCAGGATTGGAGAAACTCCAGACTCTACTTATGACTTACTCACTTGCAGGCTTTTCAATTGGTCTTGTTTAACTACAAATCAATAATGTTATCTCCTTCATTAGAATTATCTTTAGCCGTGACCAAAGACAGGTGTAGAGTAACCCATTTAGGAAACAcagctgtggcattgtgttgagtGAGGAGACTCAACCCTTCTTCTGTATATTATACACACAAGGTATCTGACTCAAGGTTTCAATTACAGGGGTGTTTAGAGCTGCCGAGCTCTCCTGTAGGAAATCAAGGCACCGTAATAAGGGCACCACCCTAAGAGTCAATATGTAGCTCAAAATCAAAATCCTGGTTCCATTAACGCTAATCCAGATAACTGATGTAGGTACAGCTAACTTAATTAGGAGGTTACAAAAATCTGACCTATGATCAGTGTCTGTGGGCAACATCTTCATGCATCCCTACTAATTGGCCTGGGTGGCATTTCTGTTTCTCTACACTTTGACCTTAGAGAGACACCATGATGAGGTCCTCCGCCACTGATCCCAAATCAGGTTTGCTTTTTGTTTTTATATAGTAATGGTTTAGGTTTAATGCTGGGGTATGgtcatctgatcctagatctgagcATAGGGGCAAATTCCACTAGGATTGTGTTTGGGTGACATTTCACTCCGGTCCATAATGCCCCGCAATGAGGAATGTGTGTGGGTAACACACAAAGGATGCCATTCAATAGCCTAAAGTGACCACCTCTGCTggtctcctccactcctctttaCTGAATGCACTGGCTaggtcagggtttcccaaactaggggttgCGACCGCTTTGAAAATGGGGTCGCGAGAGAAAATGTGCGCTTACTTCATAGAACCAGGGTTACATCATTAACCTAGATGCGGTTTTAATAAAAAAGAGTGGTTTATGTAGGGCCCTATGATTTCCGAGATGCTGAAAACGCAGACGGAATTTGGTAATAAAAATGGAATCAACTGTAAAACATGGAAGATTGCAGAATTTTCCATAATTTGGCTGAAATTGAAAATGATTTCATAATTGTAAAATTAGACGAGTAGGCCTAGATAAATAATTCAGTTTTCGATTGGGGTGTTTTGAGGGGGGAGGTTGTGCGTGGGACCCTTATGTCACCTCACAACTTGGCTGTCACTTTGAGAAACATGTCGAAGAGGCCGTCTAGGACGGCCAAGTCATCAAAAATACGAAAAACTTCGACCCTAACCCCTAAATTCAGAGCAGAGCAATACCCAAAGGACTATGAGTCAGGCGATAAGCTGTTCTGCAAATTATGTCAACATACTATTGATTGGACCCGTAAAAATACATGTGATGACCACTTAAAGTCTAAAGCCCATGTGAAAAACAAGGAAAAGCACCGTGTTAGCCAGAGCATACCTCTTCAAACAACCATTTCTAGTGCAAGCTCATCAGCAGATTCAAGACGAGAATTTATTCAGGACTTTGCGGCTGTGTGCGCGCCGAGTCAGACATCCCCTTAGAAAAGCTAAGAAAGCTATGGCCGTTTTAAGTGTGAAGCACTGCAAACAGGAAGGAGCGTTCCTCGAAAATGAGAGCAGCCTCTGTCAAACTCACCCGCCCCGTGTGTGCGGCCAACATATGACTGCCGTTCTACTGAAGATCCGTGGGAAGAAGTTTGTGGTGGTTGTTGACGAGACAACAGATCCAGGGGATTGCAGCATTCTAAACATCGTCATTGGTGTTGAAAACCAGTACTTTCTGGTAGATGTCATTTTCATGGACAGATGCAACTACTCAACGTTTTCCCAAGCTATACTAGCCTCCCTCCACAGCAACCATCTGAACCTGAATGATGCCTGGGCAGTGGTCACAGACCATGCCTCCTACTGCCTGAAGGCATACAAGGAGGTTCTGAAAGGAGAGATGCCCAACAGTGTTCATGTACCCTGTCTCTATCAGGTCATCAATCTGGAGGGTGAAACCTGGCAGCACTACAAATACTTCTCTGAAGTTGCATCACTTGGGACATGGATGAGATCTGTCTTCTTCAAGAAGCCTGTCAGAAATAGAAGATGGGTGAGCTTCCTCATTATGAAGGAGTTTGTGCAGGCCAAGGCTCCTCCTGAAGCAGTGAGCTCCAGATGGAATAGTTCATTTGAGGCAGTGAAGTACCATGCAGagcatgttcatctgtacagagAGTTTTTGTTGGCAGAAAAGTCATCATCCCAGGCAGTCACAAACCTCCTCAGCCAGCTGGAAACAGAGGAGAAGGTTGCTGCATTGTTGCCTACATTCTTGCATTATTATGTTTTAATTTATAATGAAACACTTTGTAGAACTCTGTATTGAAGCACTTGCCATGATAACAAATTGTGAAATGTTGTGTTGCATCATTACAAATGTACTGTTTCCCTGTACTATGCCCAAAAGCCGTTAGAACCGAGTGGACAAGACCAGTGGGACTGTGATGATGTTCTTTTCTACACAGAAGATCATCCAACATTATTGCCATACCTTTGATGCACTTCAGTCACTTCATACTGTCATAGTCCAAACTAAAAAAGTAAACAATTGCAGTTGATTACATaacttattttaatttaattacattttttacatcgtGGTGTcgcaattattatttttatatcaaAATGGGGTCAGGAGCCAAAGAACCTCACAAGGTTAAAGCCATGTGGATAGACAGCCATCCAGGAATTCACCTGTTCGGTACAGGtggaggataggagacgaggaagccactttagactattgagatacacccactgaattttttattttatttaacctttatttaactaggcaagtcagttaagaacaa
>XM_021625714.2
ACGGTGCTGAAATGATCATCAAGTTGACCACGCTTTTTGTCTTGGAAAGAAATGTAAAGAAGACACAATATGCTTCCTGCATGAAATGATAGTGCTACATATGTCTGGCAGCTGGAAGGTGAAGCGAGGATCTCATTATCAAGTCTACTTGTAGGATGGCATTGTGAGAGATGGCATATCACATTTCAGTCAAGAAAACAAAATAACACTAAATACTGAACCGTGACCCTTTTtaatctcactgtctctctctgtgtgtgggtctATTTTCATTCAGATGGTGACAGAGACATTCTGAAGACAACAGGATCTACAGGAGGGCAGAGGGCTGCAGGCAGATTCACAGTTGTCTCCGTGACACTGACACTGCCAGTAATAATGGGCTTTGTGTAGAAGCCCAGGCAGGAAATGAAGTTTACTGTGATTGCTTGGGAACGTCACACAGAGGTGAGGACAGGGTCTTTTCAGCTGGAGAGACAACATTTCTCCTCCTTTTGTGCCAGTGGTTGTCGTGGTCCCCAAACGTCTCTGTGTTGCCCTGGGCCAGGAGTTGTTCCTAGTCAGGTTACGTAGTCAGGATTGGAGAAACTCCAGACTCTACTTATGACTTACTCACTTGCAGGCTTTTCAATTGGTCTTGTTTAACTACAAATCAATAATGTTATCTCCTTCATTAGAATTATCTTTAGCCGTGACCAAAGACAGGTGTAGAGTAACCCATTTAGGAAACAcagctgtggcattgtgttgagtGAGGAGACTCAACCCTTCTTCTGTATATTATACACACAAGGTATCTGACTCAAGGTTTCAATTACAGGGGTGTTTAGAGCTGCCGAGCTCTCCTGTAGGAAATCAAGGCACCGTAATAAGGGCACCACCCTAAGAGTCAATATGTAGCTCAAAATCAAAATCCTGGTTCCATTAACGCTAATCCAGATAACTGATGTAGGTACAGCTAACTTAATTAGGAGGTTACAAAAATCTGACCTATGATCAGTGTCTGTGGGCAACATCTTCATGCATCCCTACTAATTGGCCTGGGTGGCATTTCTGTTTCTCTACACTTTGACCTTAGAGAGACACCATGATGAGGTCCTCCGCCACTGATCCCAAATCAGGTTTGCTTTTTGTTTTTATATAGTAATGGTTTAGGTTTAATGCTGGGGTATGgtcatctgatcctagatctgagcATAGGGGCAAATTCCACTAGGATTGTGTTTGGGTGACATTTCACTCCGGTCCATAATGCCCCGCAATGAGGAATGTGTGTGGGTAACACACAAAGGATGCCATTCAATAGCCTAAAGTGACCACCTCTGCTggtctcctccactcctctttaCTGAATGCACTGGCTaggtcagggtttcccaaactaggggttgCGACCGCTTTGAAAATGGGGTCGCGAGAGAAAATGTGCGCTTACTTCATAGAACCAGGGTTACATCATTAACCTAGATGCGGTTTTAATAAAAAAGAGTGGTTTATGTAGGGCCCTATGATTTCCGAGATGCTGAAAACGCAGACGGAATTTGGTAATAAAAATGGAATCAACTGTAAAACATGGAAGATTGCAGAATTTTCCATAATTTGGCTGAAATTGAAAATGATTTCATAATTGTAAAATTAGACGAGTAGGCCTAGATAAATAATTCAGTTTTCGATTGGGGTGTTTTGAGGGGGGAGGTTGTGCGTGGGACCCTTATGTCACCTCACAACTTGGCTGTCACTTTGAGAAACATGTCGAAGAGGCCGTCTAGGACGGCCAAGTCATCAAAAATACGAAAAACTTCGACCCTAACCCCTAAATTCAGAGCAGAGCAATACCCAAAGGACTATGAGTCAGGCGATAAGCTGTTCTGCAAATTATGTCAACATACTATTGATTGGACCCGTAAAAATACATGTGATGACCACTTAAAGTCTAAAGCCCATGTGAAAAACAAGGAAAAGCACCGTGTTAGCCAGAGCATACCTCTTCAAACAACCATTTCTAGTGCAAGCTCATCAGCAGATTCAAGACGAGAATTTATTCAGGACTTTGCGGCTGTGTGCGCGCCGAGTCAGACATCCCCTTAGAAAAGCTAAGAAAGCTATGGCCGTTTTAAGTGTGAAGCACTGCAAACAGGAAGGAGCGTTCCTCGAAAATGAGAGCAGCCTCTGTCAAACTCACCCGCCCCGTGTGTGCGGCCAACATATGACTGCCGTTCTACTGAAGATCCGTGGGAAGAAGTTTGTGGTGGTTGTTGACGAGACAACAGATCCAGGGGATTGCAGCATTCTAAACATCGTCATTGGTGTTGAAAACCAGTACTTTCTGGTAGATGTCATTTTCATGGACAGATGCAACTACTCAACGTTTTCCCAAGCTATACTAGCCTCCCTCCACAGCAACCATCTGAACCTGAATGATGCCTGGGCAGTGGTCACAGACCATGCCTCCTACTGCCTGAAGGCATACAAGGAGGTTCTGAAAGGAGAGATGCCCAACAGTGTTCATGTACCCTGTCTCTATCAGGTCATCAATCTGGAGGGTGAAACCTGGCAGCACTACAAATACTTCTCTGAAGTTGCATCACTTGGGACATGGATGAGATCTGTCTTCTTCAAGAAGCCTGTCAGAAATAGAAGATGGGTGAGCTTCCTCATTATGAAGGAGTTTGTGCAGGCCAAGGCTCCTCCTGAAGCAGTGAGCTCCAGATGGAATAGTTCATTTGAGGCAGTGAAGTACCATGCAGagcatgttcatctgtacagagAGTTTTTGTTGGCAGAAAAGTCATCATCCCAGGCAGTCACAAACCTCCTCAGCCAGCTGGAAACAGAGGAGAAGGTTGCTGCATTGTTGCCTACATTCTTGCATTATTATGTTTTAATTTATAATGAAACACTTTGTAGAACTCTGTATTGAAGCACTTGCCATGATAACAAATTGTGAAATGTTGTGTTGCATCATTACAAATGTACTGTTTCCCTGTACTATGCCCAAAAGCCGTTAGAACCGAGTGGACAAGACCAGTGGGACTGTGATGATGTTCTTTTCTACACAGAAGATCATCCAACATTATTGCCATACCTTTGATGCACTTCAGTCACTTCATACTGTCATAGTCCAAACTAAAAAAGTAAACAATTGCAGTTGATTACATaacttattttaatttaattacattttttacatcgtGGTGTcgcaattattatttttatatcaaAATGGGGTCAGGAGCCAAAGAACCTCACAAGGTTAAAGCCATGTGGATAGACAGCCATCCAGGAATTCACCTGTTCGGTACAGGtggaggataggagacgaggaagccactttagactattgagatacacccactgaattttttattttatttaacctttatttaactaggcaagtcagttaagaacaa

Function

NR:

description
uncharacterized protein LOC110538749

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035599.1 False 3585 mRNA 0.44 3 53626034 53634165
XM_021625714.2 True 3410 mRNA 0.43 2 53630479 53634165

Neighbor

gene id symbol gene type direction distance location
trnal-uag-2 NA coding upstream 80470 53545483 ~ 53545564 (+)
cdr2a LOC106606747 coding upstream 147750 53464210 ~ 53478284 (+)
LOC110538736 LOC106606748 coding upstream 167413 53456336 ~ 53458621 (+)
LOC110538743 LOC106601732 coding upstream 175561 53445335 ~ 53450473 (+)
LOC118938324 NA coding upstream 380546 53228140 ~ 53245488 (+)
LOC110515633 LOC106601742 coding downstream 24605 53658770 ~ 53662221 (+)
LOC110486792 LOC106601749 coding downstream 56295 53690460 ~ 53694370 (+)
LOC110486793 LOC106601743 coding downstream 73158 53707323 ~ 53712693 (+)
LOC110486795 NA coding downstream 89982 53724147 ~ 53727783 (+)
cyth3b LOC105026136 coding downstream 108962 53743127 ~ 53791552 (+)
G1187192 NA non-coding upstream 183214 53442564 ~ 53442820 (+)
G1187173 NA non-coding upstream 197994 53427418 ~ 53428040 (+)
G1187167 NA non-coding upstream 204992 53420774 ~ 53421042 (+)
G1187163 NA non-coding upstream 212933 53411591 ~ 53413101 (+)
G1187151 LOC106601727 non-coding upstream 229003 53391858 ~ 53397031 (+)
G1187245 LOC106606732 non-coding downstream 7735 53641900 ~ 53653613 (+)
G1187253 NA non-coding downstream 34251 53668416 ~ 53669862 (+)
G1187259 NA non-coding downstream 42344 53676509 ~ 53766636 (+)
G1187244 NA non-coding downstream 78959 53713124 ~ 53716000 (+)
G1187271 NA non-coding downstream 82141 53716306 ~ 53720111 (+)
LOC110539012 LOC106606743 other upstream 603053 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1236838 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1270093 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1449529 52175266 ~ 52176505 (+)
G1187452 NA other downstream 554402 54188567 ~ 54198015 (+)
G1187390 NA other downstream 629901 54264066 ~ 54265028 (+)
axin2 LOC105026129 other downstream 657420 54272638 ~ 54300365 (+)
G1188344 NA other downstream 1359509 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1487096 55121261 ~ 55122619 (+)

Expression


Co-expression Network