LOC110486787 (LOC106606732)


Basic Information

Item Value
gene id LOC110486787
gene name LOC106606732
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53641894 ~ 53658826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941505.1
ATTTTTGGATTGGCTGTGAAGAGCGGTGCATTCTGGGTAGGACGTCAGCGCGTCCATATctgtattttactgctgctgaAGGAGAGAAACGGGAGTCATGAAAGGGATCCGAACTCTAAATAAATTCTCCATACGATGCTATGCAGCCAGGAGGAGTGATGTCCTCACTGAGCCCTTGGCTGGCCTGAAGGCTGGGGCGGCCCTGCCTCCCCAGAGTGTACAGGTGTCCAAGCTGCCCAACGGTCTAGTGATTGCGTCATTGGAGAACTACTCTCCCGTGTccagtgtgggtgtgtttgttaaAGCAGGCACTCGTTATGAGACTGTGGAGAACCAGGGAGTCAGTCATGTCCTGCGGTTGGCAGCCAATCTGACTACTAAGGGAGCGTCTGCGTTCAGGATCTGTCGTGGTGTGGAGGCAGTGGGGGGTAGTCTGAGCGTAACGTCATCGAGGGAGACCATGGTTTACTCTGTGGAGTGTTTGAGAGACCACTTAGACACAGTGATTGAGTACCTGATCAACGTGACCATGACCCCAGAGTTCCGGCCATGGGAGGTGGACGACCTGACCTCCAGGGTCAAGGTAGACCGGGCCCTGGCCCACCAGTGTTCACAGATAGGTGTCATTGAGAAGTTGCATGAAGCTGCTTACAAAAACGCTCTATCCAACTCCCTGTACTGTCCTGACTACATGGTTGGCAAAGTCAGTGGTGAACAGCTGCAGTCCTTTGTCCAGAACAATTTCACCAGTGCCAGAATGGCTCTTGTAGGACTAGGTGTGAATCACTCAGTGCTGAGGCAGGTAGGAGAGCAGTTTCTCAGTGTCCGCAGTGGGGCTGGAGTTGCTGGGGCCAAGGCTGTATACCGCGGAGGTGAGCTGCGGGTGCAGAACGGGGCCGGTCTGGTCCACTCGCTGATCGCCAGCGAGGGCGGTGTGACTGGATCAGCAGAGGCCAATGCCTTTAGTGTGCTGCAAAGGGTTCTGGGAGCCGGGCCACACGTAAAGAGAGGCTCCAACGTCACCAGCAAACTGAGCCAGGGCATCGCCAATGCAACCACACAGCCCTTCGATGCCACAGCCTTCAATGCCACATACGCTGACTCTGGACTCTTTGGAGTCTACTCCATCGCCCAAGCCGACTCCGCAGGAGAGGTGATCAAAGCTGCCATCGCCCAGGTGACAGGGGTTGCGAAGGGAGGCGTGTCCGAGGACGATGTCACCAGAGCAAAGAAGCAGTTGAAAGCCGAGTACCTGATGTCCATGGAGAGTTCCGAGGGCCTGCTGGAGGAGATGGGGGCCCAGGCTCTGTCCAGCGGAGCCTACCACTCACCAGAGACAGTTACCCAGAGCATCGACTCTGTCAGCCACGCAGACGTTGTCAACGCTGCGAGAAAGTTTGTGGACGGCAAGAAATCGATGGCAGCTAGCGGACACCTCGCCAACACACCCTTCGTGGATGAATTGTGAAAATAaataaaccataaacaatgaaacaGTTATTTAACATTTTAACCTGGGCAGGTTGTGCCTGGCTGCTTACTCCAGAAAAAGGAACCTGGTTCTGATATGAAGCCCATGACTTCATCTCACAGTAAACGATAATCTTTTGTTAACAAATCATGTTAAAGTTTGTTCTACAATAATTGTACACAGGTATCAGGAATAATTATGCTTTTTGTTGTCAATTTCTCTGTATATTTGATGTAAATTCATTAAATGGCCTATCTACAGTAATGGCAGTCTGATTTGATCACCAAGATGAATGTGAGTAATGATATCTTTGTTATTCCGCCCAGCTGCTGCAGGGGGAGACTAAGAGCCTTGAAAATCTGTTGGCGCTGCTACATCAGCAAAAATGTTGCATCTAGTGTAGCAGCCAAGTATGTTAGAATGAGGGGAAAATTGTGGGGGTATTGTTTatatcaaaaatataaacgcaacatgtttcatgagctaaaataaaagatcccagaaatgtt

Function

NR:

description
cytochrome b-c1 complex subunit 2, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00415 QCR2, UQCRC2; ubiquinol-cytochrome c reductase core subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941505.1 True 1980 mRNA 0.51 14 53641894 53658826

Neighbor

gene id symbol gene type direction distance location
mosmoa C20H16orf52 coding downstream 3581 53607021 ~ 53638313 (-)
vwa3a vwa3a coding downstream 44422 53566463 ~ 53597472 (-)
sdr42e2 LOC106601735 coding downstream 77228 53551060 ~ 53564666 (-)
LOC118938676 NA coding downstream 98396 53543380 ~ 53543498 (-)
LOC118938675 NA coding downstream 99656 53542120 ~ 53542238 (-)
LOC110515632 LOC106601741 coding upstream 4676 53663502 ~ 53679228 (-)
LOC110486790 LOC106606738 coding upstream 21270 53680096 ~ 53690204 (-)
LOC110486791 LOC106601672 coding upstream 40413 53699239 ~ 53708270 (-)
LOC110486794 LOC108245165 coding upstream 54297 53713123 ~ 53725269 (-)
cacng5b LOC106606721 coding upstream 134750 53793576 ~ 53803352 (-)
G1187826 NA non-coding downstream 92578 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 94397 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 159925 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 198595 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 286444 53308264 ~ 53355450 (-)
G1187779 NA non-coding upstream 34402 53693228 ~ 53697259 (-)
G1187893 cyth3 non-coding upstream 126441 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 133481 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 218700 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 220032 53878858 ~ 53879075 (-)
G1186670 LOC100194703 other downstream 982085 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1611234 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1630683 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2151653 51489777 ~ 51490241 (-)
si:ch73-374l24.1 LOC105026133 other upstream 147818 53806640 ~ 54049592 (-)
G1188147 NA other upstream 790057 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 806707 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 940575 54599401 ~ 54600449 (-)
LOC110486825 LOC106606691 other upstream 1085599 54741479 ~ 54748709 (-)

Expression


Co-expression Network