LOC110515632 (LOC106601741)


Basic Information

Item Value
gene id LOC110515632
gene name LOC106601741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53663502 ~ 53679228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941506.1
CCTTTGAGGACCTAAACAGCAGGGGGCGATAAGGAGCTCTGTTTCACTTTGCTGAGAAAGTaaaacagagagaaaagaagaaaTGGCGTCTGGTGGTCACGATTCTTAACAATTTTTCGGTCGACACCTGACAAATTTGGATTGTTCTATTGATGCCGCAATGTTTATCAGGCTTGACTAAAGTGAAAGGATGGCCGAAATCATTGCTGTGAACATCTCAGCCACATCCGCCACCTTCTTCCTGCCCCCATCTCCTGTACTTGAGGACTCTGGCTTTCCCCTGGCCTCGCTGGACAGTGAGGACTATGTGTTTGTGGAGGCCAGGCACCCCAACAAGGTCCTGGAGGGCCTGAACAGCCTGCGTCTCAACAATGCCTTCTGTGATGTGACACTGTGCTGTGGGGGGCAGGAGTTCCCCTGTCACCGTATCGTACTGGCTTCCTTTAGCTCCTACTTCCAGGCCATGTTCTCCACAGACCTGATGGAGTCCAGACAGGAGCGGGTGGCCATCAACGGAGTGGAGTCCCAGATGATTGGCATGCTGGTCAGCTACGCCTACACGGCTGAGGTGGTCATCTCCAAGGCAAACGTGCAGGCCCTGCTGGCTGCGGCCAACCTCTTGGATGTGATGGCAGTGCGCGAAGCCTGCTGCCGCTTCATGGAGCGCCAGATGGATGAGATGAACTGTGTGGGCATCCACTGCTTCGCTGGGGCCCACTCCTGTAGGGAGCTGGAGAAACACAGCATGGACTACATCCTCCAGCACTTCGGCAGTGTCTGCCAACAGGAGgagttcctctctctgtgtgcagACAAGCTGACGGAGATCATCGCCAGCGACCACCTGAACGTAGCCAAGGAGGAGACTGTGTTCGAGGCCACCATGCTGTGGCTGGACAAGAGCGCCACCCGCAGGCAGAGCTTTGAAAAGGTCTTGGAGCACATCCGCCTGCCCCTGATCAGCCCGTACTACATCCACGATGTGATTGAGTCTCTGGAGGTGGTCCGGGAGTCTCAGCGCTGTCAGAGGCTCATCTCTGAGGCCAAGGACTACCTGCTGCTACAGGACCGACGAGGAGAGCTCTACTGCCCCCGAGCACGCCCACGTAGGTCCACAGGGACAGCTGAGGTGATTGTGACGGTGGGAGGAGAGGACGATAAGGTGGTGCTGCGTAGCGTGGAGAGTTTTGACCCCCTTACCAGCCAGTGGAAGAGTCTGGCCTGCCTGCCCTTCGCTGTCAGTAAACACGGCCTGGTGGTTTCAGGCTCCACTCTGTACCTGGCTGGAGGGGAGTTCCCTGATGGCTCAGCCAGCAGAGAGATGTGGCGCTATGACCCCTGCTTCGACTCCTGGCTGGAGATGGCCCCCATGAACGTAGCTCGCTCAGAGctaggtTTGGTGATGCTGGATGGCTATGTGTTTGCAGTGGGGGGCTGGGAGGGCCGTTCCCGCCTGGACTCTGTAGAGTGTTACAACCCCCACACCAACACCTGGCAGTTCATGGAGTCGGTCAAGATGGCTGTCACCAGCCCTGCTGTGGTGGCACTGGATGGACTGCTCTATGTCACAGGTGGTGCTGTTCTAGAGGATGGTGACGGCACAGACCTGGCCCAGGTGTACAACCCTAAAACGTCTGTATGGACTGAGGTGGCCCCCATGCAGATCGCTCGCTCCGGCTCTGCTGCCTGCACCCTGAAGGGGAAAATCTACGTCATAGGTGGCTGGCATGCGTCCACAGAGAACACAGACAAGGTGGAGTGTTACGACCCCAAGAGTAACCAGTGGACCATGTGTGCCCATATGAGGGAGAGGCGCTACCGGCCCGGTGTGGCCGTGGTGGACGGCAAGATCTACGTGCTgggtggagaggagggctgggacaGGTACCACGACACCATCGAGCGGTACTGTGAGGAGACAGACAGCTGGGAGATCGTGGGGGAGATGCCCACCAGCCGGAGCTGGCTGAGCTGTGTCTCTCTGCAGCTGAGGAAGGATGCCCATGGGGGCAGCCGCCCCGGCACTGCCTCAGAGACCGAGTTCTCTGTGGACTGAGGGAGAACTCCAGACCGAGGTCCTTGTACCATTCATTTATATTGCTCCAGACTGCCACCTTTTGGAGAGCTCTAAGTATGCATCTCTGCCAAACAGTCAACCTGACCCTGGCTGTTCAGGTGCTGAACAAAGTCACTCTGTGCCAGAGAGAATGCCAGAGGGCAGCTAACTACCTTAGTAGGGCTGGTATTCTGTCTCATCGTGAGTCTTGACCTTGCCAAGTGACTGCGCCTCCAGGCTTAACTCATGGAGAAGGACAGTTGTGTGACTGCCTCAATGGCAAGCCTGACAAAAGTGGTCTTTATTTCACCATGAAAGCCTGTTCTCTTACTCAATGGCATGGTTCCATTCTGTTGCCATGTCACTATGTCCATGGTAACGGTATCATTTAGGATGGATGACCCTCGTCACACACTTATGGAACCCTCTCTTTTAATGTTACGTGAACGTTTGGGGTCAGGGTGTTTCATTAAACTGTCCCCAAGATGTTCTCTCCTCAACCATCGCAGTCTATTTTTGCATTATTTGTATGTGacgttttgtatttatttgatgTCTTTAGTTGAGGATGGCCCATTTTATTACAATTGGAAGATTATTATTTTTCCTGTTTATAAAAGATGCTCTTTATTGGCCAAAGAATCTATTGTGAACCAGTATTTAAGACTAATTAGTGAACAAAAGCCAAACATGTTAAGTGTTTTGTCATGCAAATTTGGAAGGAATGTTCACAATTGCCTTTTGACTGCCTGTTATATGGTTTAGTTTATATGTCTAATTGGTATGCTTGGTAAATGTTGCTTTTGAGTAGTCATTTTAATTCTGTAAAAgtggaaatgtgtatttaataaaAGCATATGGATGCCAATTTA

Function

NR:

description
kelch-like protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941506.1 True 2928 mRNA 0.53 12 53663502 53679228

Neighbor

gene id symbol gene type direction distance location
LOC110486787 LOC106606732 coding downstream 4676 53641894 ~ 53658826 (-)
mosmoa C20H16orf52 coding downstream 25189 53607021 ~ 53638313 (-)
vwa3a vwa3a coding downstream 66030 53566463 ~ 53597472 (-)
sdr42e2 LOC106601735 coding downstream 98836 53551060 ~ 53564666 (-)
LOC118938676 NA coding downstream 120004 53543380 ~ 53543498 (-)
LOC110486790 LOC106606738 coding upstream 868 53680096 ~ 53690204 (-)
LOC110486791 LOC106601672 coding upstream 20011 53699239 ~ 53708270 (-)
LOC110486794 LOC108245165 coding upstream 33895 53713123 ~ 53725269 (-)
cacng5b LOC106606721 coding upstream 114348 53793576 ~ 53803352 (-)
si:ch73-374l24.1 LOC105026133 coding upstream 127412 53806640 ~ 54049592 (-)
G1187826 NA non-coding downstream 114186 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 116005 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 181533 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 220203 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 308052 53308264 ~ 53355450 (-)
G1187779 NA non-coding upstream 14000 53693228 ~ 53697259 (-)
G1187893 cyth3 non-coding upstream 106039 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 113079 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 198298 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 199630 53878858 ~ 53879075 (-)
G1186670 LOC100194703 other downstream 1003693 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1632842 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1652291 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2173261 51489777 ~ 51490241 (-)
G1188147 NA other upstream 769655 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 786305 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 920173 54599401 ~ 54600449 (-)
LOC110486825 LOC106606691 other upstream 1065197 54741479 ~ 54748709 (-)

Expression


Co-expression Network