LOC110486790 (LOC106606738)


Basic Information

Item Value
gene id LOC110486790
gene name LOC106606738
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53680096 ~ 53690204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558608.2
CGATATGATGACGCCCAGCGCTCTGACCAAACCACTCACATCTCCGATGCGCAATTGTGGCGCTCCAACGCGCTGGAAGGAAGAACAAAATGCCAGATTTCTTCTGCTAAAAGACGTGCCTTTTTATTTAATTTCACAGTGTAGCGTTCTAAACACAGAGTAAACATGTCTAGGTACCACAAAGCAGCGATCGATGGCTACCTGGACCTCTTGAAAGAGGCTACCAGGAAAGACCTGAATTCTCCGGACGAGGACGGGATGACGCCTACGCTATGGGCTGCTTTTCATGGACACGTCGAGGCCCTTCAACTTATATGTAGCCGAGGAGGGGACCCCAACAGGAGCGATATCTGGGGCAACACGCCGCTGCACCACGCCGCCACCAATGGTCACATGCACATCCTCAGCTTCCTGGTCAACTTCGGCGCCAACCTCTTCTCCCAGGACAACGACTTCCACACAGCTATGGACGTGGCAGCGTCGGGCGACCGCATGGACTGCGTGCGATTCCTGGACACTGCCGCATCACAGCAGACCATCCAGAATGCCAAGAAAGTGGCCAGGCTGAAGAAGGAGGCCACCAAAGAGGCTGAAATGCGGGTGAAACTGTGTGAGAGGGTCAAAAAAAGGCACAAGAGCAAGATGGATAAGATGTACCAAGGGTCAGTGTCAGAGGCCAGCACGGCATCTCCGTCGTTCTCCAAGATGGGCACCATCAATAGTGTGAACGAGCAGTTCTCCAAGCTGATTGCCTCTGATACCTCAGGCTCGCTTACGGCCCGGTCGAAGGGGACCCTCCAGAGAATATTCGGGAAAAAGGATAAAGGAACAACGGAGAAGGTGGGAAGAGACGGGAACGTCATCTTCGTCAAGCAGGAGAACGGCACCCTCTCTGGGAAGCCTGAGTTCATGGGCGTTTTCTCCGAGCAGGACGAGATCGATGAGGAAGAGGACGGAGGGATGAGAAGATTCACTGATGATGACGTTAATGACGATGACGAAGGAGGAGATGGCCCAGGAGCCAAGGAGTCCATCTTCAAACGGCCCGGCCTGGGGAACATGGTCTTCAGGAAGAACTTCTCCATGGAGATGGGGATAGAGCCCGACGACTTCCCCAGTGGGAACAATGAAAACCTGGGCTTCCTCATCCGCAGGGAGGGGTTCGACACAGAAGGGGAGGACACAGGCTTTGTTGAGGACGAGGAGGACGACAACCTGCCCTGGAACCAGGAGGAGATCGGCCTGGATGACGACCAGGATGAGGAGACCTCCCCGCTGGATGCCTTCCTCTCATCCATCTCCCTGCCAGACTTCTCCCCAGCCTTCACCCGTGAACAGCTGGACCTGGAGGCGCTGATGCTCTGTTCCGACGACGACCTCAAGGGCATCCGCATCCAACTGGGGCCCCGCAAGAAGATCCTGGAAGCTGCCGCTCGCCGGAAAAGTGCACTGGAGAAACCTGGCGCCATCAAGGACAGCTTCCTGTGATGAAATTCTGATATTGGAGGTGATTGAATATGGCTGAATGGAGAAAGTAGGATGAATGCAAGTAGGAGGATGTAGAGTGACAATACTTTTGAATGAAAAGAACACTGATGCAAAGTTGAGAGTTTGAAGTGGAAATACATATCCTGGTTTTCTATCCTTTAAAGACAAATTCTTTAATCTTTCTCTTACCTTGGACTAGGAGTGACTGCAGCCCTTCATTACTTTGCTATAGCCGCCACAGGCTAAAGTTAGCATTGATTCACCTAAAACAATGGGGGTTCGACGGGCTGGATAAGTCTGGCACTGTGACGAGATAATCGGACATGGTTGAACTGAGCAGGAATGTCATTTAGATTAATGGAGTGGCAataacaccaccacaaccactaccaaCCCCCATCTTGCAATACCAATTCATGAAGATAGAAGGAAGAAACACTGTCAGATTTCAAACATAATTTGAGCTGCATGCTCTTTTTGGCATGTCTCTGAGAAGCACACGACTCATTTTGAGTAATGATGTAATGTAAGAGCCTATTAAGTGGAAACTGTTCTGATCTTGATTTTCTTGTTTCCTCCTTTGATGATTGATAGAAAGGAGACAATATTGTGATGAATTCAGTTGTGACATTTTGTATGTGAATTTTAATCCTTGTGATTTGTACATTGATTAAAAAATGTATGACAACCAAAATAAATAACGTTTCTAAATCA

Function

NR:

description
ankyrin repeat and SAM domain-containing protein 4B-like

GO: NA

KEGG:

id description
K21414 ANKS4B, HARP; ankyrin repeat and SAM domain-containing protein 4B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558608.2 True 2202 mRNA 0.50 2 53680096 53690204

Neighbor

gene id symbol gene type direction distance location
LOC110515632 LOC106601741 coding downstream 868 53663502 ~ 53679228 (-)
LOC110486787 LOC106606732 coding downstream 21270 53641894 ~ 53658826 (-)
mosmoa C20H16orf52 coding downstream 41783 53607021 ~ 53638313 (-)
vwa3a vwa3a coding downstream 82624 53566463 ~ 53597472 (-)
sdr42e2 LOC106601735 coding downstream 115430 53551060 ~ 53564666 (-)
LOC110486791 LOC106601672 coding upstream 9035 53699239 ~ 53708270 (-)
LOC110486794 LOC108245165 coding upstream 22919 53713123 ~ 53725269 (-)
cacng5b LOC106606721 coding upstream 103372 53793576 ~ 53803352 (-)
si:ch73-374l24.1 LOC105026133 coding upstream 116436 53806640 ~ 54049592 (-)
LOC118938612 NA coding upstream 736059 54426263 ~ 54426404 (-)
G1187826 NA non-coding downstream 130780 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 132599 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 198127 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 236797 53442876 ~ 53443299 (-)
G1187750 NA non-coding downstream 324646 53308264 ~ 53355450 (-)
G1187779 NA non-coding upstream 3024 53693228 ~ 53697259 (-)
G1187893 cyth3 non-coding upstream 95063 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 102103 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 187322 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 188654 53878858 ~ 53879075 (-)
G1186670 LOC100194703 other downstream 1020287 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1649436 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1668885 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2189855 51489777 ~ 51490241 (-)
G1188147 NA other upstream 758679 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 775329 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 909197 54599401 ~ 54600449 (-)
LOC110486825 LOC106606691 other upstream 1054221 54741479 ~ 54748709 (-)

Expression


Co-expression Network