LOC110486791 (LOC106601672)


Basic Information

Item Value
gene id LOC110486791
gene name LOC106601672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53699239 ~ 53708270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558610.2
GGACAAAATGATTCTGTCAGAATGACAAGACAGCACCCGACTCCGAAACATACCGCCACCTATCCGTCAGGATCAACTGTTACACATCCTGCAAAACagaagtaacgttagctagctagctaataagacGGTGATCACCATGGACCAACGCCACCAGTCCCACCACAGACCCCAACATCCAAACTCCAATCACCACGACAACCACCAGTCAACATTCAAGAGAGACATGGATGACAGTGGGAGAGGCCATTTCCAACACAAGCGCTTCAGACCTGGTCAGAACCATCACCCGGCTGGCCCTTCAACACCCCCATCTAGCCCCCCAACCCAGAGCCTGAGCATACAACGACAGCTGTACGAGAGAGACTTCCCCTTATACAAACAGCCTGTGGAGGTGGGACATTTCTCCCTGGACTCTGAGCGCAGGTTTTTCAATGATGCCCGGCAGCTGCGTTACTACGTGGAGCCGGAGAAGAGTTGTCCTAACTTCGACTTGAGGGACGGGTACAGGGGCCGCTTCGTCAAGAGGGACGACAGGGTGAAGGAGAAACTGGACCACATCCTCAGATGGATCCTGGCAAACAGGTCCAAGCTGCAGTCGAAGGACACAGCTGCTTCTTCTTCCCCATGTGCATTAGGTGTAGACATTGTGACATGGCGCGGCCACCTAACCAAGCTGTTGACCACGCCTTATGAGACCCGGGAGGGCTGGCTGCTGGCTGTGACCAGGATGGGGGGGACACTGTACATCAGTGAGGTGGAGACGGAGGCTGCACGCCGGGACCGGGAGAACCGCACTGAGAGGCACGAGGAGATGATGTACTGGGGATACAAATTTGAACAGTACACCTGTGCAGATGATGCCCAGAGTCTTCCAGATCCAGGTGGGGTTGTAAACACCAACGAGGCCTTCTGCACTGTAGTCCAGACCCGGCTAGCCGAGCACAGACTGCTGTTCTCTGGCGAGGTGGACTGTCGGGACAAAGACCCCAAGGCCCCGTCTCCTCCAGCCAACTACATCGAGATGAAGACCTCACTGGAAATCTCCACCCCCAAACAACGCAGCAACTTCCACAGGTTTAAACTACTAAAGTGGTGGGCCCAGTCCTTTCTTCCTGGGGTACCGCGAATCGTAGCTGGTTTCCGTGATCATGACGGAGTGGTTGTGTCTGTGGAGACTTACCACATCTCCAAGATATCTCAGCTTATCAAGAATGAAACCAACTGCTGGAAGCCAACTGTCTGCATGAACTTCTGCTGTGAATTCCTGTCCTTCGTGAAGAGTGTGGTCACAGAAGACGATCCAAGGTTGGTGCACCTGTTCTCATGGGATCCACACCGAGACGTCACCTACTCCATCCACAGAGACTCTCAGTACTCCTTCCTACCAGACTGGTACGTCAGGGAGATGACCAGTTCAACCAGTCGTGAGACACACCACCACCCACCTCAGACCTGACTCAGAACAAACCTGACAATGGTCCGTATTGACAAAGCAGCTCAGAGTAAGACTGCTGATCTAGAATAAGGTCCCTCATCCTATTCATTCTGATTTAGTAGGCAAAACGgagcctagatcagcactcctactttgaTATGCTTTATGCGTACAGGCCAAGGTTTTCACCTTATACCAGTATGGACTTGAAGCAATACTTTAACGCTGAAACCTGTTATTTGATAATGAAGTAGAAACACACCAAGCGCCCTGAAGGAGTAGGCGGGTTCTGACGGGTCGGTTTTTGACGATAAAGAAAGTTATTTTATTCAACTTCCATTTTCCTCCCAGAGTGGCTGAGTTATATAGTGTGGATCAGCATGGACTTTAGCATTCACAAACCAGCTTTTGGGACTTTCTCACAAAATGGTGTGCAGGTTCACAGAAGACATATCTTTCCTAATGGTTTGTGGTGTCTTTTTTTATGTGAAGTATTTACATTCTTCAGCTCATCtctgatttgtattttttttttacattttattacaaAATTCTGTGATCTGAATGTAACAGTTGCGGTTTGAAGTGTCTGCTCTGAAACTGTCGAACAATAGTAGCATAACAAGATTTAATTTCCCAATCAAACCTTTTTATTATTAACCCCATGGGCATATCGATCACTTATCATGTTCTTTTCTGAAGTACATGAATTAAAATATGCCacaaaaaaactaaacttaagaacatCAATATTGCATAAGCAGTTTTAACCAAAGTGTTGATGGAAACTGTCCAGTGTCAGAATGCATTGTCCTTTGTCCTATAATAAATGACACCTTCATTGAA

Function

NR:

description
decapping and exoribonuclease protein-like

GO: NA

KEGG:

id description
K14845 RAI1, DOM3Z; RAT1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558610.2 True 2284 mRNA 0.48 7 53699239 53708270

Neighbor

gene id symbol gene type direction distance location
LOC110486790 LOC106606738 coding downstream 9035 53680096 ~ 53690204 (-)
LOC110515632 LOC106601741 coding downstream 20011 53663502 ~ 53679228 (-)
LOC110486787 LOC106606732 coding downstream 40413 53641894 ~ 53658826 (-)
mosmoa C20H16orf52 coding downstream 60926 53607021 ~ 53638313 (-)
vwa3a vwa3a coding downstream 101767 53566463 ~ 53597472 (-)
LOC110486794 LOC108245165 coding upstream 4853 53713123 ~ 53725269 (-)
cacng5b LOC106606721 coding upstream 85306 53793576 ~ 53803352 (-)
si:ch73-374l24.1 LOC105026133 coding upstream 98370 53806640 ~ 54049592 (-)
LOC118938612 NA coding upstream 717993 54426263 ~ 54426404 (-)
LOC110538769 NA coding upstream 718166 54426436 ~ 54427451 (-)
G1187779 NA non-coding downstream 1980 53693228 ~ 53697259 (-)
G1187826 NA non-coding downstream 149923 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 151742 53547287 ~ 53547497 (-)
G1187821 NA non-coding downstream 217270 53481699 ~ 53481969 (-)
G1187808 NA non-coding downstream 255940 53442876 ~ 53443299 (-)
G1187893 cyth3 non-coding upstream 76997 53785267 ~ 53786453 (-)
G1187895 NA non-coding upstream 84037 53792307 ~ 53792865 (-)
G1187930 NA non-coding upstream 169256 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 170588 53878858 ~ 53879075 (-)
G1187950 NA non-coding upstream 229190 53937460 ~ 53938325 (-)
G1186670 LOC100194703 other downstream 1039430 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1668579 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1688028 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2208998 51489777 ~ 51490241 (-)
G1188147 NA other upstream 740613 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 757263 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 891131 54599401 ~ 54600449 (-)
LOC110486825 LOC106606691 other upstream 1036155 54741479 ~ 54748709 (-)

Expression


Co-expression Network