LOC110486793 (LOC106601743)


Basic Information

Item Value
gene id LOC110486793
gene name LOC106601743
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53707323 ~ 53712693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941510.1
agttccAAACATCTCTGCCAAGAGGATGTGTAACAGTTGATCCTGACGGATAGGTGGCGGTATGTTTCGGAGTCGGGTGCTGTCTTGTCATTCTGACAGAATCATTTTGTCCGGGTTATGAACCGAAAACGGGCCCTTATATCAGACACGTTTAAAGTGAACAAACGAAGAGTTGGCAATGAGAAGCAGTTTGGAGCTGTCAACAATGGAGAAGCGGGACCACTGGACGTCAAAGCCACCCTGCAGGACCTTATGACATTATTCCCACGCAAACTCTTCAATGACGCCCTTCCACAAATTGTCCTAAAACACCAACTCTACAGCATACACAATGATAGGACCCAAGTGGACAGGCAGCTTAGTGACTTGAGGGAACAGGGGGAGCTGTTGATGTTCCAGCTGGGCTTTGATGCTGAGGCCTTTGGGTTGGTGTTCGCTGCAGACTACAAGGCTAAAGTCCTggctggggaggaggggagagggacacgGGGCACAGTGGATAAATTCCTGGAGAAAGTGCTGCCCTCCTGCAATGACCTGAGCTTCAACAAAGACAAAATGCTGAAGGAGTTTCTCTTCACAGACTCAGAGATAACGCAACTGGTGAAGTCGGGGGTTCTGACTGTGAGGGACGCTGGCAGCTGGTGGCTCTCCATCCCCAACTCTGGCAGATTCACCAAGTACCTAATACAGGGTCGTAAAGCTGTGCTGGGCATGGTTAAGAAGTCCAAATATAATGAAGTCTTAAAGGCAGAACTGGAGGAGAGGCAGACCAACTCACAGGTTAAATTCCAGATCAAGTACCACATCCATGACATCATTGGTGCAGAGCTAGTAGAATGTATACCCACAACTTCAGGAACATTGTTACGGTGTGTGGACTACTGAACCCAACTGACTGAATGGATACAACAACCTGTTTCATGGATGAAACCCTTAAAGCAACTGAACATGACGAGAGGCCATGTTACACCAACGAATCTGGTTAATCATTTATTGCCTTGTTTTTCTGCCAAATAGGTGAAATGCCAATGGTGTAAAATAAAGCCTTTTCTGGTTTGTAAATCGTTTAAGGTT
>XM_036941509.1
TTATGTGGACTAGATAGGATGTGTAACAGTTGATCCTGACGGATAGGTGGCGGTATGTTTCGGAGTCGGGTGCTGTCTTGTCATTCTGACAGAATCATTTTGTCCGGGTTATGAACCGAAAACGGGCCCTTATATCAGACACGTTTAAAGTGAACAAACGAAGAGTTGGCAATGAGAAGCAGTTTGGAGCTGTCAACAATGGAGAAGCGGGACCACTGGACGTCAAAGCCACCCTGCAGGACCTTATGACATTATTCCCACGCAAACTCTTCAATGACGCCCTTCCACAAATTGTCCTAAAACACCAACTCTACAGCATACACAATGATAGGACCCAAGTGGACAGGCAGCTTAGTGACTTGAGGGAACAGGGGGAGCTGTTGATGTTCCAGCTGGGCTTTGATGCTGAGGCCTTTGGGTTGGTGTTCGCTGCAGACTACAAGGCTAAAGTCCTggctggggaggaggggagagggacacgGGGCACAGTGGATAAATTCCTGGAGAAAGTGCTGCCCTCCTGCAATGACCTGAGCTTCAACAAAGACAAAATGCTGAAGGAGTTTCTCTTCACAGACTCAGAGATAACGCAACTGGTGAAGTCGGGGGTTCTGACTGTGAGGGACGCTGGCAGCTGGTGGCTCTCCATCCCCAACTCTGGCAGATTCACCAAGTACCTAATACAGGGTCGTAAAGCTGTGCTGGGCATGGTTAAGAAGTCCAAATATAATGAAGTCTTAAAGGCAGAACTGGAGGAGAGGCAGACCAACTCACAGGTTAAATTCCAGATCAAGTACCACATCCATGACATCATTGGTGCAGAGCTAGTAGAATGTATACCCACAACTTCAGGAACATTGTTACGGTGTGTGGACTACTGAACCCAACTGACTGAATGGATACAACAACCTGTTTCATGGATGAAACCCTTAAAGCAACTGAACATGACGAGAGGCCATGTTACACCAACGAATCTGGTTAATCATTTATTGCCTTGTTTTTCTGCCAAATAGGTGAAATGCCAATGGTGTAAAATAAAGCCTTTTCTGGTTTGTAAATCGTTTAAGGTT
>XM_036941507.1
GTGTAACAGTTGATCCTGACGGATAGGTGGCGGTATGTTTCGGAGTCGGGTGCTGTCTTGTCATTCTGACAGAATCATTTTGTCCGGGGTATGTTTAAACGATTGGCAAATCTTGTTTGACCAAGAGTTGCTACAGCAATGCTTACTTTAAGTCAGTTATGAACCGAAAACGGGCCCTTATATCAGACACGTTTAAAGTGAACAAACGAAGAGTTGGCAATGAGAAGCAGTTTGGAGCTGTCAACAATGGAGAAGCGGGACCACTGGACGTCAAAGCCACCCTGCAGGACCTTATGACATTATTCCCACGCAAACTCTTCAATGACGCCCTTCCACAAATTGTCCTAAAACACCAACTCTACAGCATACACAATGATAGGACCCAAGTGGACAGGCAGCTTAGTGACTTGAGGGAACAGGGGGAGCTGTTGATGTTCCAGCTGGGCTTTGATGCTGAGGCCTTTGGGTTGGTGTTCGCTGCAGACTACAAGGCTAAAGTCCTggctggggaggaggggagagggacacgGGGCACAGTGGATAAATTCCTGGAGAAAGTGCTGCCCTCCTGCAATGACCTGAGCTTCAACAAAGACAAAATGCTGAAGGAGTTTCTCTTCACAGACTCAGAGATAACGCAACTGGTGAAGTCGGGGGTTCTGACTGTGAGGGACGCTGGCAGCTGGTGGCTCTCCATCCCCAACTCTGGCAGATTCACCAAGTACCTAATACAGGGTCGTAAAGCTGTGCTGGGCATGGTTAAGAAGTCCAAATATAATGAAGTCTTAAAGGCAGAACTGGAGGAGAGGCAGACCAACTCACAGGTTAAATTCCAGATCAAGTACCACATCCATGACATCATTGGTGCAGAGCTAGTAGAATGTATACCCACAACTTCAGGAACATTGTTACGGTGTGTGGACTACTGAACCCAACTGACTGAATGGATACAACAACCTGTTTCATGGATGAAACCCTTAAAGCAACTGAACATGACGAGAGGCCATGTTACACCAACGAATCTGGTTAATCATTTATTGCCTTGTTTTTCTGCCAAATAGGTGAAATGCCAATGGTGTAAAATAAAGCCTTTTCTGGTTTGTAAATCGTTTAAGGTT
>XM_036941511.1
GTGTAACAGTTGATCCTGACGGATAGGTGGCGGTATGTTTCGGAGTCGGGTGCTGTCTTGTCATTCTGACAGAATCATTTTGTCCGGGGTATGTTTAAACGATTGGCAAATCTTGTTTGACCAAGAGTTGCTACAGCAATGCTTACTTTAAGTCAGTTATGAACCGAAAACGGGCCCTTATATCAGACACGTTTAAAGTGAACAAACGAAGAGTTGGCAATGAGAAGCAGTTTGGAGCTGTCAACAATGGAGAAGCGGGACCACTGGACGTCAAAGCCACCCTGCAGGACCTTATGACATTATTCCCACGCAAACTCTTCAATGACGCCCTTCCACAAATTGTCCTAAAACACCAACTCTACAGCATACACAATGATAGGACCCAAGTGGACAGGCAGCTTAGTGACTTGAGGGAACAGGGGGAGCTGTTGATGTTCCAGCTGGGCTTTGATGCTGAGGCCTTTGGGTTGGTGTTCGCTGCAGACTACAAGGCTAAAGTCCTggctggggaggaggggagagggacacgGGGCACAGTGGATAAATTCCTGGAGAAAGTGCTGCCCTCCTGCAATGACCTGAGCTTCAACAAAGACAAAATGCTGAAGGAGTTTCTCTTCACAGACTCAGAGATAACGCAACTGGTGAAGTCGGGGGTTCTGACTGTGAGGGACGCTGGCAGCTGGTGGCTCTCCATCCCCAACTCTGGCAGATTCACCAAGTACCTAATACAGGGTCGTAAAGCTGTGCTGGGCATGGTTAAGAAGTCCAAATATAATGAAGTCTTAAAGGCAGAACTGGAGGAGAGGCAGACCAACTCACAGGTTAAATTCCAGATCAAGTACCACATCCATGACATCATTGGTGCAGAGCTAGTAGAATGAGTTGTACTCTTTTGATATTGACTGAATACTGGGAAGGGCTTGCAAGTGAAGCATgttactgtacttgtgcacgtgacaactTGGAACTTGACTCCTGGGCGTAGCCATCAACTATTCTTGTCGACTGACGTGTATCTAATACAATTGGTCATGTTGTACCCACATTACCAGCTCTTTTCTTTTTAGTATACCCACAACTTCAGGAACATTGTTACGGTGTGTGGACTACTGAACCCAACTGACTGAATGGATACAACAACCTGTTTCATGGATGAAACCCTTAAAGCAACTGAACATGACGAGAGGCCATGTTACACCAACGAATCTGGTTAATCATTTATTGCCTTGTTTTTCTGCCAAATAGGTGAAATGCCAATGGTGTAAAATAAAGCCTTTTCTGGTTTGTAAATCGTTTAAGGTT

Function

NR:

description
serine/threonine-protein kinase 19-like isoform X3

GO: NA

KEGG:

id description
K08880 STK19; serine/threonine kinase 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941510.1 False 1077 mRNA 0.47 8 53707323 53712693
XM_036941509.1 False 1070 mRNA 0.47 8 53707812 53712693
XM_036941507.1 False 1118 mRNA 0.47 7 53708186 53712693
XM_036941511.1 True 1305 mRNA 0.46 7 53708186 53712693

Neighbor

gene id symbol gene type direction distance location
LOC110486792 LOC106601749 coding upstream 12953 53690460 ~ 53694370 (+)
LOC110515633 LOC106601742 coding upstream 45102 53658770 ~ 53662221 (+)
LOC110538749 LOC106580644 coding upstream 73158 53626034 ~ 53634165 (+)
trnal-uag-2 NA coding upstream 161759 53545483 ~ 53545564 (+)
cdr2a LOC106606747 coding upstream 229039 53464210 ~ 53478284 (+)
LOC110486795 NA coding downstream 11454 53724147 ~ 53727783 (+)
cyth3b LOC105026136 coding downstream 30434 53743127 ~ 53791552 (+)
LOC110538759 NA coding downstream 329052 54041745 ~ 54046402 (+)
cep112 LOC106606716 coding downstream 340055 54052748 ~ 54263997 (+)
axin2 LOC105026129 coding downstream 559945 54272638 ~ 54300365 (+)
G1187253 NA non-coding upstream 37461 53668416 ~ 53669862 (+)
G1187245 LOC106606732 non-coding upstream 53710 53641900 ~ 53653613 (+)
G1187192 NA non-coding upstream 264503 53442564 ~ 53442820 (+)
G1187173 NA non-coding upstream 279283 53427418 ~ 53428040 (+)
G1187167 NA non-coding upstream 286281 53420774 ~ 53421042 (+)
G1187244 NA non-coding downstream 431 53713124 ~ 53716000 (+)
G1187271 NA non-coding downstream 3613 53716306 ~ 53720111 (+)
G1187322 NA non-coding downstream 142689 53855382 ~ 53855971 (+)
G1187372 NA non-coding downstream 272938 53985631 ~ 53986350 (+)
LOC110538743 LOC106601732 other upstream 256859 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 684342 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1318127 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1351382 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1530818 52175266 ~ 52176505 (+)
G1187452 NA other downstream 475874 54188567 ~ 54198015 (+)
G1187390 NA other downstream 551373 54264066 ~ 54265028 (+)
G1188344 NA other downstream 1280981 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1408568 55121261 ~ 55122619 (+)

Expression


Co-expression Network