cacng5b (LOC106606721)


Basic Information

Item Value
gene id cacng5b
gene name LOC106606721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53793576 ~ 53803352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941513.1
CGCGCAGCGATGATATCAATCACCATGGCACGAAGCGTCTGAGTTGAGCTGAGCAGGACAGCTACGTGCTGGTGCGGTCTGCGGATATGTCCGTCGTcagtagtgagtgagtgaggtcgCCTGCTAAATCCTAGGAGCTCTAGAGGAAGCGCACCTTCATGCCAAGAAGCGAGTGGCTACGGTGTGCACCTCCGTCCGTCTTGTCTGTTTACCCAGCGGCGCTCCAACACTTTTTGTTACTGTCTGTGAGGGGTGCAGATGAAGACACACATAGGAGGGAGAACTACTGAGAGAGAACCCAGACTCATCCTACGCACACAGATCTGAGatctgacctctcacctctgaccCAGTGCCCCCTACTGGTGCGGACCACCTCTGATCCTACCGTGATGAGCGCGTGCGGCAGGAAGGCTCTGGCATTGCTGAGCAGCGTGTTTGCGGTCAGCGGGCTGGGGCTTCTGGGAGTTGCGGTCTCTACAGACTACTGGCTGTACCTGGAGGAGGGGGTCATCCTGCCCGTGAACCAGACCACTGACATCAGGACCTCCCTGCACTCTGGACTCTGGAGAGTCTGCTTCCTGGCAGgTGAAGAGGCAGGTCGCTGTTTCACCATCGAGTACATCATGCCCATGAACTTACAGCTGACCTCTGAGTCCACAGTCAGTGTACTTAagatgaTTCGTTCAGCCACTCCGTTTCCTCTGGTCAGTCTGTTCTTCATGTTCATCGGCTTTGTGCTAAACAACATCGGACACGTCCGACCTCATCGCACCATCCTGGCCTTTGTCTCCGGAATCTTCTTTATCCTTTCAGgTCTGGCTCTGGTGGTAGGTCTCGTGTTGTATATATCCAGTATTAATGACGAGATGTTGAACAGGACTAAGAGCAGTGAGTCCTACTTCAGCTACCGGTACGGCTGGTCCTTCGCCTTCGCTGCCATCTCCTTTCTGCTCACTGAGagtGCGGGCGTCATGTCCGTCTACCTGTTCATGAAGCGCTACACAGCCGAGGAAATGTACCAGCGCCACCACCCCGGCTTCTACCGGCCACGCCTCAGTAACTGCTCTGACCACTCCGGTCAGTTCCTGCACCCGGAGACCTGGGCACGTGGACGCAGCCCCTCGGACATCTCCAGCGAAACCTCACTCCAGATGAGCACCAGCTACCCGGCCCTGCTCAAGTGCCCCGACTACGACCAGGTCTCCTCCTCACCCTGCTGAAGGGGTCATATCAGGTCAGGGCAGGTCGCCAAGGTCAAGGGTGAGAAGTCATAGGTGATGTTGCTTTTCGATactgatctaagatcagcttTCTTTTTTAAGTTATCTGGAGTCTGTGGAGGGTTGCTGGGAAGTTGCTGGGTGTGGATAGAACCTCCCGCCTGTTTACTGGGAGATCAGTCCCAATAGATATACAGGGAAGCCTCTGTCTCTTTATTTTCTTGTTGTTCGTTCCCATTGTGATGCTGTGCCCTGGACCCTGTTTGAAAACGTCTATGATTGCTGCTGAGGCAACAGTTGATGCCGCTGTGCCACATCTTACCTACAGATGGCAGCAAAGTGCAGAGTTTTTTCAGGAGTATTCACTTCTCACCTATTTTCTATTATATCTGGATACTTACTGCCACTGATTAGTTAACTTGACGAGGACCAAACTAACATTTACACAAATGTTTGAACGGGAACAATACATGTCACTATATTAAAGctgcaatcagcagttgaaacaataacaaagtgaacTCCCATCCCTTTTAggtaaaaagctgaggaatggggctagagaaatgtaaccactctcaaattcatagacagagctatggatgcaaggactggccatccatgatatctaAATTATTGTTACCATGTTTTGAAggtatatagtgtttgtttacaaacactggagtgaaacaagcttttattttggtttccgattgttatgacagttgaactaagcatATGAGGCATTTGTAATATTATAACATTATATTCTTAAGAGGTCCAAAAATGGATGAAACAACTGCAGATTGCACCTTTAAACGTGTATGTGTGATATGTTAAATTGTGTAGTTTGCTTCATGTTGGAGTTTTTTGATGTGTCCCTGCTGGCTCACGGATCTGCCAACATGACGTTTTCATGTTATGGAATCTCCTCCCAGACAATGCTTTGTTTATGTATCATGTAAAAATGAATTATTTGAAAAGTAATTGGTATTCACTCTTAGAAAGATTGTTTATACATGCATATGGATAACTGTTGTACATTGTATGAATATACCGAACCATTGTCAAATGTGTAGTCGCTGCTTAAAATGATTCATTCTGAGTGTCAGCTTCATGCCGTCGGCATAGCAACTGTTACAAACTGTACAATATCTGGAGAATATATAAATGTGGGAAATAAATAGACTTTGTGAAATCTTTTT

Function

NR:

description
voltage-dependent calcium channel gamma-5 subunit

GO: NA

KEGG:

id description
K04870 CACNG5; voltage-dependent calcium channel gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941513.1 True 2428 mRNA 0.47 6 53793576 53803352

Neighbor

gene id symbol gene type direction distance location
LOC110486794 LOC108245165 coding downstream 68307 53713123 ~ 53725269 (-)
LOC110486791 LOC106601672 coding downstream 85306 53699239 ~ 53708270 (-)
LOC110486790 LOC106606738 coding downstream 103372 53680096 ~ 53690204 (-)
LOC110515632 LOC106601741 coding downstream 114348 53663502 ~ 53679228 (-)
LOC110486787 LOC106606732 coding downstream 134750 53641894 ~ 53658826 (-)
si:ch73-374l24.1 LOC105026133 coding upstream 3288 53806640 ~ 54049592 (-)
LOC118938612 NA coding upstream 622911 54426263 ~ 54426404 (-)
LOC110538769 NA coding upstream 623084 54426436 ~ 54427451 (-)
LOC118938329 aqp8 coding upstream 933362 54736714 ~ 54740723 (-)
LOC110486825 LOC106606691 coding upstream 938127 54741479 ~ 54748709 (-)
G1187895 NA non-coding downstream 711 53792307 ~ 53792865 (-)
G1187893 cyth3 non-coding downstream 7123 53785267 ~ 53786453 (-)
G1187779 NA non-coding downstream 96317 53693228 ~ 53697259 (-)
G1187826 NA non-coding downstream 244260 53549099 ~ 53549316 (-)
G1187823 NA non-coding downstream 246079 53547287 ~ 53547497 (-)
G1187930 NA non-coding upstream 74174 53877526 ~ 53877991 (-)
G1187931 NA non-coding upstream 75506 53878858 ~ 53879075 (-)
G1187950 NA non-coding upstream 134108 53937460 ~ 53938325 (-)
G1187972 NA non-coding upstream 183880 53987232 ~ 53987767 (-)
G1187975 NA non-coding upstream 204026 54007378 ~ 54007651 (-)
mosmoa C20H16orf52 other downstream 155763 53607021 ~ 53638313 (-)
G1186670 LOC100194703 other downstream 1133767 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1762916 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1782365 52010690 ~ 52011211 (-)
G1186154 NA other downstream 2303335 51489777 ~ 51490241 (-)
G1188147 NA other upstream 645531 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 662181 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 796049 54599401 ~ 54600449 (-)

Expression


Co-expression Network