LOC110538759


Basic Information

Item Value
gene id LOC110538759
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54041745 ~ 54046402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035600.1
CACACCATAGCTACTGGGGAGTTCTACAACTGAGCTGACTGCTATGGCTCTTGGACACTAAGGGTCTCTTGGCTCTATTTTGTGTTTGTAGGCAGTAGAAGTTTTCCTGTCAAATGGAAAGCTGTTTTCTGCTCTTTTGCCCTGATCCTGTGTGAGCAGGCTAGAGCCAATAGCCCCAATATTCCTGGAGCCTATGTACCCCAGTGTAACAAGGAGGGCCTGTACACCCCAAAGCAGTGCAACGGCTCTACAGGATACTGCTGGTGTGTTAACACCGAGGGATAGATGTCGTCTCTCCACTACTCCAGGCTCTCCCATTCCATGTGTAGTGAGACTGTCCCAAGCAGCCAGAAGCTCTCAGAAGACTTCAAGACCCAGTGTTAATGAGGTAGCAGGACCTGTTAACCAATACCCCTGTGGGTTGCCCTTATGGGTTCCAAAGGCCTCTCAGAATGTTGGACCTCCTATGGGTGGCAGCCCAGACACATCCACCCATCTCCAGAATCCACTGGTGGCCAGCAAGGTAAAGGAAACATCTCCCTCTGCTGCTGAGCAGCAAGAACCGGCCCCATGGATCAAGCAGTGTGTTGGGCCCCACCAGCTGCCACGATCCTGTTCTACCTCCACCCAGCATTATTTTTCAGAACCATAACGACTATGAACGAGGCAGTGGTTTTCTCCAACACCCTCTACTCCCCAGGAGACCCAGCCCAGCCCTCTGTTAGTGTTGTATCCCATGATATCAGTAAACCTGTGCCTAACCAGCCTCTCCTTAGACCAAGTGCTGGATCCAAAGGAGTGGAGTATCCTATCCTCAGGTACTGTTACAACTACATGTGTAGTAGTCTAATTTGGATGAC
>XR_005035601.1
ATGGCTCTTGGACACTAAGCCCTGATCCTGTGTGAGCAGGCTAGAGCCAATAGCCCCAATATTCCTGGAGCCTATGTACCCCAGTGTAACAAGGAGGGCCTGTACACCCCAAAGCAGTGCAACGGCTCTACAGGATACTGCTGGTGTGTTAACACCGAGGGATAGATGTCGTCTCTCCACTACTCCAGGCTCTCCCATTCCATGTGTAGTGAGACTGTCCCAAGCAGCCAGAAGCTCTCAGAAGACTTCAAGACCCAGTGTTAATGAGGTAGCAGGACCTGTTAACCAATACCCCTGTGGGTTGCCCTTATGGGTTCCAAAGGCCTCTCAGAATGTTGGACCTCCTATGGGTGGCAGCCCAGACACATCCACCCATCTCCAGAATCCACTGGTGGCCAGCAAGGTAAAGGAAACATCTCCCTCTGCTGCTGAGCAGCAAGAACCGGCCCCATGGATCAAGCAGTGTGTTGGGCCCCACCAGCTGCCACGATCCTGTTCTACCTCCACCCAGCATTATTTTTCAGAACCATAACGACTATGAACGAGGCAGTGGTTTTCTCCAACACCCTCTACTCCCCAGGAGACCCAGCCCAGCCCTCTGTTAGTGTTGTATCCCATGATATCAGTAAACCTGTGCCTAACCAGCCTCTCCTTAGACCAAGTGCTGGATCCAAAGGAGTGGAGTATCCTATCCTCAGGTACTGTTACAACTACATGTGTAGTAGTCTAATTTGGAT

Function

NR:

description
PREDICTED: equistatin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035600.1 False 860 mRNA 0.51 4 54041745 54046402
XR_005035601.1 True 737 mRNA 0.52 3 54041788 54046399

Neighbor

gene id symbol gene type direction distance location
cyth3b LOC105026136 coding upstream 250193 53743127 ~ 53791552 (+)
LOC110486795 NA coding upstream 313962 53724147 ~ 53727783 (+)
LOC110486793 LOC106601743 coding upstream 329052 53707323 ~ 53712693 (+)
LOC110486792 LOC106601749 coding upstream 347375 53690460 ~ 53694370 (+)
LOC110515633 LOC106601742 coding upstream 379524 53658770 ~ 53662221 (+)
cep112 LOC106606716 coding downstream 6346 54052748 ~ 54263997 (+)
axin2 LOC105026129 coding downstream 226236 54272638 ~ 54300365 (+)
tex2 LOC106599243 coding downstream 339103 54385505 ~ 54425642 (+)
LOC110538772 ern1 coding downstream 381163 54427565 ~ 54455175 (+)
samd9l LOC106601757 coding downstream 411153 54457555 ~ 54544268 (+)
G1187376 NA non-coding upstream 30133 54010555 ~ 54011612 (+)
G1187372 NA non-coding upstream 55395 53985631 ~ 53986350 (+)
G1187322 NA non-coding upstream 185774 53855382 ~ 53855971 (+)
G1187259 NA non-coding upstream 275109 53676509 ~ 53766636 (+)
G1187433 NA non-coding downstream 100796 54147198 ~ 54147698 (+)
G1187452 NA non-coding downstream 142165 54188567 ~ 54198015 (+)
G1187486 NA non-coding downstream 222917 54269319 ~ 54269899 (+)
G1187524 NA non-coding downstream 301600 54348002 ~ 54348250 (+)
G1187532 NA non-coding downstream 324210 54370612 ~ 54372602 (+)
LOC110538743 LOC106601732 other upstream 591281 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 1018764 52907896 ~ 53046938 (+)
LOC110486767 alkb7 other upstream 1652549 52374824 ~ 52390015 (+)
G1185855 NA other upstream 1685804 52274330 ~ 52355941 (+)
G1185815 NA other upstream 1865240 52175266 ~ 52176505 (+)
G1187390 NA other downstream 217664 54264066 ~ 54265028 (+)
G1188344 NA other downstream 947272 54993674 ~ 54997295 (+)
G1188386 NA other downstream 1074859 55121261 ~ 55122619 (+)

Expression


Co-expression Network