LOC110538769


Basic Information

Item Value
gene id LOC110538769
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54426436 ~ 54427451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035602.1
TTACATCAAGCAAGAGGAACATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGTAGTTGCATGCAATGGCAATCCAATAACCATAGAAAATATCCATTGTTGTATGAATGATGTTTTAACGCGTTAGACTTCTGATTGACAGTGAAGTTGACTTTTGTTGTTCTGACTCATAACCCAGGCATGGACATCAATGTGGTTGTCTCCAGTCTTGGTGAATAACTTTTTTTTGTGCTTATTTTTGCCTTTGCGACTTCAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTTGTAGTGGAA
>XR_002475811.2
CATTACATCAAGCAAGAGGAACATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTTGTAGTGGAA
>TU1355017
CATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTT
>TU1355018
CATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGTAGTTGCATGCAATGGCAATCCAATAACCATAGAAAATATCCATTGTTGTATGAATGATGTTTTAACGCGTTAGACTTCTGATTGACAGTGAAGTTGACTTTTGTTGTTCTGACTCATAACCCAGGCATGGACATCAATGTGGTTGTCTCCAGTCTTGGTGAATAACTTTTTTTTGTGCTTATTTTTGCCTTTGCGACTTCAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTT
>TU1355019
CATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGTAAGGTTAATTTATTGACATCTGGATTAACTTTAAACATCCTTGATGCTAAATCATTTCGTTAATGTTTTGATTCTATTCCCCAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGTAGTTGCATGCAATGGCAATCCAATAACCATAGAAAATATCCATTGTTGTATGAATGATGTTTTAACGCGTTAGACTTCTGATTGACAGTGAAGTTGACTTTTGTTGTTCTGACTCATAACCCAGGCATGGACATCAATGTGGTTGTCTCCAGTCTTGGTGAATAACTTTTTTTTGTGCTTATTTTTGCCTTTGCGACTTCAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035602.1 False 744 mRNA 0.42 3 54426436 54427449
XR_002475811.2 False 542 mRNA 0.44 4 54426436 54427451
TU1355017 False 512 lncRNA 0.45 4 54426445 54427430
TU1355018 False 716 lncRNA 0.43 3 54426445 54427430
TU1355019 True 802 lncRNA 0.41 2 54426445 54427430

Neighbor

gene id symbol gene type direction distance location
LOC118938612 NA coding downstream 32 54426263 ~ 54426404 (-)
si:ch73-374l24.1 LOC105026133 coding downstream 376844 53806640 ~ 54049592 (-)
cacng5b LOC106606721 coding downstream 623084 53793576 ~ 53803352 (-)
LOC110486794 LOC108245165 coding downstream 701167 53713123 ~ 53725269 (-)
LOC110486791 LOC106601672 coding downstream 718166 53699239 ~ 53708270 (-)
LOC118938329 aqp8 coding upstream 309263 54736714 ~ 54740723 (-)
LOC110486825 LOC106606691 coding upstream 314028 54741479 ~ 54748709 (-)
LOC110485228 LOC106606689 coding upstream 385671 54813122 ~ 54831352 (-)
LOC110486827 LOC106606694 coding upstream 405659 54809618 ~ 54889445 (-)
trnaa-ugc-61 NA coding upstream 428084 54855535 ~ 54855610 (-)
G1188115 NA non-coding downstream 28806 54397276 ~ 54397630 (-)
G1188106 NA non-coding downstream 78106 54348130 ~ 54348330 (-)
G1188083 NA non-coding downstream 135309 54290835 ~ 54291127 (-)
G1188082 LOC106606676 non-coding downstream 135831 54290305 ~ 54290605 (-)
G1188073 NA non-coding downstream 161412 54264036 ~ 54265024 (-)
G1188146 LOC106601756 non-coding upstream 25695 54453146 ~ 54455169 (-)
G1188128 NA non-coding upstream 30159 54457610 ~ 54549633 (-)
G1188155 NA non-coding upstream 84727 54512178 ~ 54517142 (-)
G1188161 NA non-coding upstream 96247 54523698 ~ 54524645 (-)
G1188130 NA non-coding upstream 114494 54541945 ~ 54593120 (-)
mosmoa C20H16orf52 other downstream 788623 53607021 ~ 53638313 (-)
G1186670 LOC100194703 other downstream 1766627 52659331 ~ 52659809 (-)
G1186381 NA other downstream 2395776 51924963 ~ 52030660 (-)
G1188147 NA other upstream 21432 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 38082 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 171950 54599401 ~ 54600449 (-)

Expression


Co-expression Network