LOC110486825 (LOC106606691)


Basic Information

Item Value
gene id LOC110486825
gene name LOC106606691
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54741479 ~ 54748709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939769.1
ATGGCTCTCTATGAGTCTAAGACCGAGCTCTGGGACCTGGACATCAATGTGATCCAGCCAGAAAGGAAAGGTCCAGATACAGCCACAGATGGAAACAGCAGTACCGAGTCGTTCAGGGATGCGTTCCAACGTTATATCCAGCCCTGTCTGGCAGAGCTGCTGGGTTCATCTCTGTTTATCTTTGTGGGGTGTCTGTCTGTGATCGAGAACACAGAGGGCACCGGAAGGCTGCAGCCGGCCCTGGCACACGGCCTGGCCCTGGGCATCGTTATCGCCGTGCTGGGGGAGATCAGtgggGGCCACTTCAACCCagcagtgtctgtgtctgtgtttctgatcgGGGGTCTCAACATCATACTGCTGGTCCCCTACATACTGGCTCAGATGTGTGGAGGGATGATAGGGGCAGGACTAGCCAAGGTGATTTCCCCATCCATGAACTATGCCAAAGTTTCAGGGGCAGCATTCGACACAGTGCAGGCCGACACCCAGATAGTACCAGCCACGGTGGCAGAGGTGATCATGACTCTGTTCCTGACGATGGTGGTGTGTATGGGGGCCGTGAATGGACGCACGCGCAGCCTGTTGGCCCCTCTCTGCATCGGGCTGACCGTGACCGCAGACATCTTGGCTGGGGGAGCAGTGTCTGGGGCATGTATGAACCCAGCTCGTGCCTTTGGCCCGGCTGTGGTGGCCGACTACTGGAGCTATCACTGGATCTACTGGGTGGGACCCATGTCTGGAGCCCTGCTAACCGCCAGCTTCATACGACTACTGCTTGGGGATGAGAAAACCAGAGTTATCTTGATGTGATACAGATGTAGGTTTCCAGTTCAAGTCCATAAAAAAGTCAATTTCCAAAATCCACATAAATTCTAACAGTAtttttgtgttactatttccatGTCTCTTAGTTTAAAATAATCTTACCAATGTAACTTTATTCTATACCGGTATATATAGATGATCTATTGTCCATAAATGCAATCTATTTTATTCAATGCCATTTGTATAAACACATTTTGTACAGTAAATATTgcattgtatatttttttttatgattgATCCCTTTTGACATAGTAGAAGTGACTTCTGGCCCATAGTCTGTGTTTTATACCGCCACCTTTTGGTTATGTGGTGAACTACAGCCTTGCATTGGTCTGACTCTCACTGTACTGTGATACAGACTTTCATATGCGTCATGCCTTTTCACTGATTATCTGCACACAGACATCCAAAAACTAGCCACATTAGATAACATTGAATTTGACACTGTAATTGCTATCTTGACTGAAAGTctcagccatagaaatataattactaggaAGGACATAGCCCCTCAGACAACCGGTCCTCCCATTATGGACTCATTGACTTGAACGGGGACCTCtcttctagtaattatatttctatggcagaCACTCATTGGAGACAGTAGTATGTGAACGTTCAAAAAATGTTGCAGTGAAGATTCAAGAAATGAAGTATAAATGTGTACAGCAGAGGAGTGTCCATTTATTGATTTGTACGTTGGAAATATAGAAGATGCTGTTTCTTTCATACGCAATTAATACAAATGAATTATTAAATGAATTCATGAATTCCA
>TU1355133
ATCCAGCCAGAAAGGAAAGGTCCAGATACAGCCACAGATGGAAACAGCAGTACCGAGTCGTTCAGGGATGCGTTCCAACGTTATATCCAGCCCTGTCTGGCAGAGCTGCTGGGTTCATCTCTGTTTATCTTTGTGGGGTGTCTGTCTGTGATCGAGAACACAGAGGGCACCGGAAGGCTGCAGCCGGCCCTGGCACACGGCCTGGCCCTGGGCATCGTTATCGCCGTGCTGGGGGAGATCAGtgggGGCCACTTCAACCCagcagtgtctgtgtctgtgtttctgatcgGGGGTCTCAACATCATACTGCTGGTCCCCTACATACTGGCTCAGATGTGTGGAGGGATGATAGGGGCAGGACTAGCCAAGGTGATTTCCCCATCCATGAACTATGCCAAAGTTTCAGGGGCAGCATTCGACACAGTGCAGGCCGACACCCAGATAGTACCAGCCACGGTGGCAGAGGTGATCATGACTCTGTTCCTGACGATGGTGGTGTGTATGGGGGCCGTGAATGGACGCACGCGCAGCCTGTTGGCCCCTCTCTGCATCGGGCTGACCGTGACCGCAG

Function

NR:

description
aquaporin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939769.1 False 1606 mRNA 0.46 5 54741479 54748709
TU1355133 True 571 TUCP 0.57 3 54744425 54748658

Neighbor

gene id symbol gene type direction distance location
LOC118938329 aqp8 coding downstream 756 54736714 ~ 54740723 (-)
LOC110538769 NA coding downstream 314028 54426436 ~ 54427451 (-)
LOC118938612 NA coding downstream 315075 54426263 ~ 54426404 (-)
si:ch73-374l24.1 LOC105026133 coding downstream 691887 53806640 ~ 54049592 (-)
cacng5b LOC106606721 coding downstream 938127 53793576 ~ 53803352 (-)
LOC110485228 LOC106606689 coding upstream 64413 54813122 ~ 54831352 (-)
LOC110486827 LOC106606694 coding upstream 84401 54809618 ~ 54889445 (-)
trnaa-ugc-61 NA coding upstream 106826 54855535 ~ 54855610 (-)
LOC118938095 LOC106601785 coding upstream 140896 54889605 ~ 54890333 (-)
LOC110486831 e4f1 coding upstream 146357 54895066 ~ 54907473 (-)
G1188204 NA non-coding downstream 50021 54689825 ~ 54691458 (-)
G1188198 NA non-coding downstream 84313 54656870 ~ 54657166 (-)
G1188197 NA non-coding downstream 92583 54648283 ~ 54648896 (-)
G1188176 NA non-coding downstream 99984 54573900 ~ 54641495 (-)
G1188232 NA non-coding upstream 13324 54762033 ~ 54762940 (-)
G1188235 NA non-coding upstream 16856 54765565 ~ 54767157 (-)
G1188252 LOC106606653 non-coding upstream 52240 54800949 ~ 54802533 (-)
G1188256 NA non-coding upstream 55245 54803954 ~ 54805755 (-)
G1188186 LOC106588841 other downstream 141030 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 270641 54409911 ~ 54470838 (-)
G1188147 NA other downstream 291459 54448883 ~ 54450020 (-)
mosmoa C20H16orf52 other downstream 1103666 53607021 ~ 53638313 (-)
LOC110486836 LOC106606701 other upstream 273939 55022619 ~ 55026465 (-)
LOC110516592 LOC106601772 other upstream 462790 55209614 ~ 55242150 (-)
LOC110485238 LOC106601829 other upstream 686107 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 1163515 55912224 ~ 55915885 (-)
G1188189 NA non-coding downstream 133910 54608498 ~ 54610515 (-)

Expression


Co-expression Network