LOC110486831 (e4f1)


Basic Information

Item Value
gene id LOC110486831
gene name e4f1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54895066 ~ 54907473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941554.1
TTGGCCAATTTTTACCAAAATCTGGTAAAACGCATAATTCAAAATCCAAGTCGTCCTATGATTTGTCTCTTCTACCTCCTTCCCTCGTATTGCACTTTTGTTGTTATGACTACGAGGTCGTAAATCCGCCATGTTTTCTCTCGAGTAGCGTTGCGACAGAGACGGAGAACTCAAACGACAtgaatgtagaaaataataatacGGCAGAAACAGTGAGCGAGCAAACGGATCACGGCAACAACATCGTCACAATTCAAACAACTCTCGGAGATGAAGATGAAGATGTCCACAAGTGCGGACGCTGCCAGTCCGAGTTTTGTACGCTGGAGGCATTCATCCAGCACAAGCTTCAGCAGAACTGCACGCGGGCACAGGAACCCCAGGTGCCCGTCAATAAACCCCGAGATGACAACCAAGAGGTGTTTGCCCCAGATGGAACCTCTGCTACCTTGACAAGAATGGACGGAAGTGGACTGTCTTCAGATGAACCAGACAAGTCCAACAACAACGGTGAGGTAGAAGTTGAAGGCCACTCCTCTCGAAGTCGCAGGAAGAGGGGTGGCACAGGGAAGGCAACTGTCCAAACAGAGGGGACCGAGGACCACAGCCCTGACGGTGCAGACAAGCCAGTCTACAGGGTCAACAAAGATGGACGCTACATTTGCCAAACATGTGAGAAGACATTCAAAACGACAAACATCCTGAGAACCCATATGATCACCCACAGTGAGAATAAGAATTTCCCCTGCGAGCTCTGTGGGAGTGCCTTCCGCACCAAAGGCTCCCTCATTCGTCACAACCGCCGTCACACAGACGAGCGCCCGTACCACTGTAACCTGTGTGGACTCTCCTTCAGGGAGTCAGGGGCTCTGACCAGGCATCTCAAGTCCATCACCCCATGCACTGAGAAGATCCGCTTCAACCAGTACAAGGAGATCCTCGTCAGCAAGGACGGACAGCAGAAAGGAGTAGAGGCAGAGGCCGCCTCATTGGCTGCTCAGCAGGAAGTGGagcagcaggaggaagaggaagcaCAGGCGGCAGTGGTCAGCGTGGTGGAGACTGACAGCGGAGGACAGGAAGTCATCCACGAGGTCCATTTCCacatggaggtagagggagaagggCAGGAACAGCAGGTTATATTGGACCAGGCTCAGGCAGATGCCCTGGTGGCCGAGGGGGACAACCTCATCTGCCAGGCCATCATCAACTCTGGCATCGCCCTGGAGGCAGTcactgaggaggtggaggaggccgAGGAGCAGGCACTGGACGGGATGCCTAAAGAGGTCCTGCAGGTCAGGGACATGGAGGGCAGGATGACAGAGATCCAGGTGATGGAGGAGTGTGTGGAGATGGAGGCTGAGGAGATGGTGGACATATCTGACAAGCAGGAGGATCTGCCGCCGTCTAAAAGTCACAAGTGTCCTCACTGCAGTCGCTCCTTTAAGGCGCTCAACTACCTCCGCTTCCATGTCAAAGGTCACCTCGGCTGCAAGCCCTTCAAGTGTGTGATGTGTCAGAAAGAGTTCCTGACAGGCTACCTGTTGAAGAAGCACATGGAGGTCCACCTGAGTGAGAGGCGGTACAAGTGTGGTGAGTGCGGCAAGCTGTACAAGACCATCGGACACGTCCGGGAACACATGAGGGCCCATTCGGAGGAACGGCCGTACAACTGCAACAGCTGTGACAAGGGATACAAGACCAAGAATGCCTTGCAGGTGCACCAGCGGACGCACGCCCAGGAGAAACCATACGTGTGCCAGTTCTGCTCACGGGGCTTCAGGGAGAAGGGCTCTCTAGTGCGCCACATCCGCCATCACACCGGAGAGAAGCCCTTCAAGTGTCACAAGTGTGGGCGGGGCTTCGCTGAGCATGGCACCCTCAACCGCCATTTACGTGCCAAAGgTGGCTGTTATGCTGGCCAGAAGGAGGGGTCTGGGGAGGAAGGCATGCTGGTCtcagaggagcaggtttctgcaGACAGCCTGGCCACAGCAGCCATCATGTCAGACGACCCCCACGCTGTGCTGGTGGAGTTCTCCTCTGTGGTGGCTGACACCCAGGAATACATCATTAGGGCcccaggagtggaggaggaggaggaggaggaggggcagggCGAGGAGGTGACTCTCATCCAAGACAACCAGAATCAGATGGGCAACCACATCATGAAGGTGGTGCAGCAGATCGTCAACCAATCACGTGGTGGCATCGGCGGCCACCAAATCATTGTGCGCAATGTCTCCATGGACGAGGGCACATCCATCTCCGACTGTGGCGACACCATCACCATAGCAACGCCTGAGAACCTGACCGCGCAGGTCGCCATGACCCTGGCCTCGGCCATCAGCGACGGAACCCTTCTGGCAGGAGGCGGCGCACTGGAAACGCCCGATGGCACGGTCACCATGGTAACAACATCGGGGGGCGAGGACATGGTCGAGGTGATGgaacagcagcaggaggaggagttTGTTATTACGTCATCGGAGGAGGTGGAGATCCAGACAGTCATTATATGATTTCTTTGTGTTATGAAGTGTCTTATGAAAACTCAGGACTTTGCATGAGTTATGAATACGGTGTGTTTTTATAAGAACAGAATGTCTTATGAAGAGTTTCTTATGAGaactcaggactttgaatgggaACATTGGTCTATGTTTGAGGAGTTAGCTTGTATTATGGACAGTTTGCATGAGGACTGTCGTTGTATAAGGTTGAAAGATTCTGTTTGTATAAAGTTTGACATTTTATTTGACAGTATTAGTCAATTTCTATTGGGTAAGGATTGCAATCAATTATTGGAAGAGTATTATGTCTTAAGTCACTGAAGTAAGGAGGACTGAAGTGTAAGTTTTACTTGGACAGGAGTGGAGCTGCCTTCATTTTAGTACACTTAACTGTAATGTCATTGGTTGTCAACACTGCTCAACCAATCACAAGGTACGAACAGTAAGCTTATAGCGAGGTCACAGGAGCTCAAGTACTTACCTTTGCCTTGATAGTCTCAAAAGCCTTAGAATGTTCACTGTTTCTGTTACACTTAGACATTACACCAGGAGATGTCAACTTtataaaatacccccccccccccccttaattaAAACAATTATACTACCTAatgactggagttgtttaccttgGACAGATTCATTATAAAATATTCTGTTATGCTTGACCATAGACTTAAAATGCTTTAGTGATTGTTCGTGAGAGTCTCTGGATTGTATTCATTAGGGCATACCATTATTAAAACGTTTGGCAATGGAAGAAACTAAATGAGCATttcttattagacaatttctacTCTTGGTTGCCCAGTGAATATGACTGTGATCTGATGCTGTTGGACTGTACTGCTGATATGTGTCTCCATTACACATCACCCTTACAGTAGACGGACAGACGCCTCACTACTGCCAAATGCTGTGATCTATTACTTGACTGGCTACGTTTGCGTGGAATGAATAAATGCTACTTTCAATACAA
>XM_036941555.1
TAAGGCATCGCATCAATGCCATGCTGTGGACAAGTTTGCCCTCTTGTAGAGAATGACAGCGTTGCGACAGAGACGGAGAACTCAAACGACAtgaatgtagaaaataataatacGGCAGAAACAGTGAGCGAGCAAACGGATCACGGCAACAACATCGTCACAATTCAAACAACTCTCGGAGATGAAGATGAAGATGTCCACAAGTGCGGACGCTGCCAGTCCGAGTTTTGTACGCTGGAGGCATTCATCCAGCACAAGCTTCAGCAGAACTGCACGCGGGCACAGGAACCCCAGGTGCCCGTCAATAAACCCCGAGATGACAACCAAGAGGTGTTTGCCCCAGATGGAACCTCTGCTACCTTGACAAGAATGGACGGAAGTGGACTGTCTTCAGATGAACCAGACAAGTCCAACAACAACGTTCTCTCAGGTGAGGTAGAAGTTGAAGGCCACTCCTCTCGAAGTCGCAGGAAGAGGGGTGGCACAGGGAAGGCAACTGTCCAAACAGAGGGGACCGAGGACCACAGCCCTGACGGTGCAGACAAGCCAGTCTACAGGGTCAACAAAGATGGACGCTACATTTGCCAAACATGTGAGAAGACATTCAAAACGACAAACATCCTGAGAACCCATATGATCACCCACAGTGAGAATAAGAATTTCCCCTGCGAGCTCTGTGGGAGTGCCTTCCGCACCAAAGGCTCCCTCATTCGTCACAACCGCCGTCACACAGACGAGCGCCCGTACCACTGTAACCTGTGTGGACTCTCCTTCAGGGAGTCAGGGGCTCTGACCAGGCATCTCAAGTCCATCACCCCATGCACTGAGAAGATCCGCTTCAACCAGTACAAGGAGATCCTCGTCAGCAAGGACGGACAGCAGAAAGGAGTAGAGGCAGAGGCCGCCTCATTGGCTGCTCAGCAGGAAGTGGagcagcaggaggaagaggaagcaCAGGCGGCAGTGGTCAGCGTGGTGGAGACTGACAGCGGAGGACAGGAAGTCATCCACGAGGTCCATTTCCacatggaggtagagggagaagggCAGGAACAGCAGGTTATATTGGACCAGGCTCAGGCAGATGCCCTGGTGGCCGAGGGGGACAACCTCATCTGCCAGGCCATCATCAACTCTGGCATCGCCCTGGAGGCAGTcactgaggaggtggaggaggccgAGGAGCAGGCACTGGACGGGATGCCTAAAGAGGTCCTGCAGGTCAGGGACATGGAGGGCAGGATGACAGAGATCCAGGTGATGGAGGAGTGTGTGGAGATGGAGGCTGAGGAGATGGTGGACATATCTGACAAGCAGGAGGATCTGCCGCCGTCTAAAAGTCACAAGTGTCCTCACTGCAGTCGCTCCTTTAAGGCGCTCAACTACCTCCGCTTCCATGTCAAAGGTCACCTCGGCTGCAAGCCCTTCAAGTGTGTGATGTGTCAGAAAGAGTTCCTGACAGGCTACCTGTTGAAGAAGCACATGGAGGTCCACCTGAGTGAGAGGCGGTACAAGTGTGGTGAGTGCGGCAAGCTGTACAAGACCATCGGACACGTCCGGGAACACATGAGGGCCCATTCGGAGGAACGGCCGTACAACTGCAACAGCTGTGACAAGGGATACAAGACCAAGAATGCCTTGCAGGTGCACCAGCGGACGCACGCCCAGGAGAAACCATACGTGTGCCAGTTCTGCTCACGGGGCTTCAGGGAGAAGGGCTCTCTAGTGCGCCACATCCGCCATCACACCGGAGAGAAGCCCTTCAAGTGTCACAAGTGTGGGCGGGGCTTCGCTGAGCATGGCACCCTCAACCGCCATTTACGTGCCAAAGgTGGCTGTTATGCTGGCCAGAAGGAGGGGTCTGGGGAGGAAGGCATGCTGGTCtcagaggagcaggtttctgcaGACAGCCTGGCCACAGCAGCCATCATGTCAGACGACCCCCACGCTGTGCTGGTGGAGTTCTCCTCTGTGGTGGCTGACACCCAGGAATACATCATTAGGGCcccaggagtggaggaggaggaggaggaggaggggcagggCGAGGAGGTGACTCTCATCCAAGACAACCAGAATCAGATGGGCAACCACATCATGAAGGTGGTGCAGCAGATCGTCAACCAATCACGTGGTGGCATCGGCGGCCACCAAATCATTGTGCGCAATGTCTCCATGGACGAGGGCACATCCATCTCCGACTGTGGCGACACCATCACCATAGCAACGCCTGAGAACCTGACCGCGCAGGTCGCCATGACCCTGGCCTCGGCCATCAGCGACGGAACCCTTCTGGCAGGAGGCGGCGCACTGGAAACGCCCGATGGCACGGTCACCATGGTAACAACATCGGGGGGCGAGGACATGGTCGAGGTGATGgaacagcagcaggaggaggagttTGTTATTACGTCATCGGAGGAGGTGGAGATCCAGACAGTCATTATATGATTTCTTTGTGTTATGAAGTGTCTTATGAAAACTCAGGACTTTGCATGAGTTATGAATACGGTGTGTTTTTATAAGAACAGAATGTCTTATGAAGAGTTTCTTATGAGaactcaggactttgaatgggaACATTGGTCTATGTTTGAGGAGTTAGCTTGTATTATGGACAGTTTGCATGAGGACTGTCGTTGTATAAGGTTGAAAGATTCTGTTTGTATAAAGTTTGACATTTTATTTGACAGTATTAGTCAATTTCTATTGGGTAAGGATTGCAATCAATTATTGGAAGAGTATTATGTCTTAAGTCACTGAAGTAAGGAGGACTGAAGTGTAAGTTTTACTTGGACAGGAGTGGAGCTGCCTTCATTTTAGTACACTTAACTGTAATGTCATTGGTTGTCAACACTGCTCAACCAATCACAAGGTACGAACAGTAAGCTTATAGCGAGGTCACAGGAGCTCAAGTACTTACCTTTGCCTTGATAGTCTCAAAAGCCTTAGAATGTTCACTGTTTCTGTTACACTTAGACATTACACCAGGAGATGTCAACTTtataaaatacccccccccccccccttaattaAAACAATTATACTACCTAatgactggagttgtttaccttgGACAGATTCATTATAAAATATTCTGTTATGCTTGACCATAGACTTAAAATGCTTTAGTGATTGTTCGTGAGAGTCTCTGGATTGTATTCATTAGGGCATACCATTATTAAAACGTTTGGCAATGGAAGAAACTAAATGAGCATttcttattagacaatttctacTCTTGGTTGCCCAGTGAATATGACTGTGATCTGATGCTGTTGGACTGTACTGCTGATATGTGTCTCCATTACACATCACCCTTACAGTAGACGGACAGACGCCTCACTACTGCCAAATGCTGTGATCTATTACTTGACTGGCTACGTTTGCGTGGAATGAATAAATGCTACTTTCAATACAA

Function

symbol description
e4f1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell division and regulation of growth. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleoplasm. Is expressed in notochord. Orthologous to human E4F1 (E4F transcription factor 1).

NR:

description
transcription factor E4F1 isoform X2

GO: NA

KEGG:

id description
K22401 E4F1; transcription factor E4F1 / E3 ubiquitin-protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941554.1 False 3501 mRNA 0.50 14 54895066 54907283
XM_036941555.1 True 3421 mRNA 0.51 15 54895066 54907473

Neighbor

gene id symbol gene type direction distance location
LOC118938095 LOC106601785 coding downstream 4733 54889605 ~ 54890333 (-)
LOC110486827 LOC106606694 coding downstream 5621 54809618 ~ 54889445 (-)
trnaa-ugc-61 NA coding downstream 39456 54855535 ~ 54855610 (-)
LOC110485228 LOC106606689 coding downstream 63714 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 coding downstream 146357 54741479 ~ 54748709 (-)
LOC110486844 LOC106606699 coding upstream 25693 54933166 ~ 54938835 (-)
LOC110485232 LOC106606700 coding upstream 38888 54946361 ~ 54975807 (-)
LOC118938330 LOC106601777 coding upstream 96487 55003960 ~ 55011294 (-)
LOC110486834 LOC106601778 coding upstream 106382 55013855 ~ 55016528 (-)
LOC110486836 LOC106606701 coding upstream 115146 55022619 ~ 55026465 (-)
G1188281 NA non-coding downstream 21068 54868567 ~ 54873998 (-)
G1188275 NA non-coding downstream 40590 54854105 ~ 54854476 (-)
G1188270 NA non-coding downstream 46760 54845460 ~ 54848306 (-)
G1188259 NA non-coding downstream 77552 54816985 ~ 54817514 (-)
G1188257 NA non-coding downstream 78600 54814810 ~ 54816466 (-)
G1188311 LOC106606697 non-coding upstream 24251 54931724 ~ 54974451 (-)
G1188327 NA non-coding upstream 68723 54976196 ~ 54976771 (-)
G1188342 NA non-coding upstream 85053 54992526 ~ 54992792 (-)
G1188399 NA non-coding upstream 92060 54999533 ~ 55002316 (-)
G1188402 NA non-coding upstream 105473 55012946 ~ 55013237 (-)
G1188186 LOC106588841 other downstream 294617 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 424228 54409911 ~ 54470838 (-)
G1188147 NA other downstream 445046 54448883 ~ 54450020 (-)
LOC110516592 LOC106601772 other upstream 304026 55209614 ~ 55242150 (-)
LOC110485238 LOC106601829 other upstream 527343 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 1004751 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1200471 56088292 ~ 56110984 (-)

Expression


Co-expression Network