LOC110486830 (LOC106606695)


Basic Information

Item Value
gene id LOC110486830
gene name LOC106606695
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54907568 ~ 54925441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941556.1
CTGGGGTCGAATTTTTGAGACTAATTCCATGCATGAAACACAGGCGCAGTAGCTATTCCAAAGATTATGATAACAATGCGCGTGCCTTATTTCCCACACGTCAAACAATACGTGGACAGATCAGATAAATGACCATTTACTAGCCTGGATGATTTAATTATGTGAGGATGGGTGCAACTTCTCTCTACTCTAGTATATTCTGCTGCACAGAGCAGAGCGCTATCTTTTCGCAGtgctttttttattattaaatgcTGGGTGGGTGCGTTCATTTATAGCTCAGTGGGTAGTGTGTGTGACGAGGTACCACTAGTGTAACGCGGAAGTTCGTTGAAAGTTGTCGTGCATTTCGTGTACAGTAGACCTTCCACAACATTCGGTGTTCAAGTTCCTTTTTTCCCCGGGAATTGTAAATGCGGAAACATTAGGACAACAAACTACATGCACGCTCTTCACTGGCGGAAGCACCATGGTAACAAAAAGGCAGGCCCTCAGAGCTGTTGTACTTTGTCTGGTGCTTGTTGCTGCTGTCAAACTTCTGCTTTCGGAATACAGAACTGAAAGGAAACAGAAGTTGGCCACCATGGATCCTGGCTCATTTTGGCATCAGGTGCCAAAGGTGAAGGAGGCTGTTACTGTACACAAGTCAGAGGATATAAACTCTTTGTTTAACTGGGCCCAGAAACCAGAGGTTCCAGAGCCTCCAGTAAAAAAAGAAGCAGGCACAGCACCTCTGGAAACCAGCAAAGGCCCTGCAAGAATAGTGCACCTGGATCTGAAAGGTGCTGCACCCAAAGTCAAATACATGAAGCAGatcttccccctcttctcctctctgggtGCTGATGGTGTTCTGCTAGAGTACGAGGACATGTTTCCCTATCATGGAAACCTGACGATTCTCAGGTCACCGTATGCCTACAGTATGGAAGATATAGAGGAGATAAAGAGCCTAGCCAAACTCAACAAGCTGGAACTGATTCCTTTAGTGCAAGTGTTTGGACACCTCGAGTTTGTGTTGAAGCATGAGAGGTATTTCCACCTGAGGGAGGTGAGTGCTTTCCCTAACAGTCTGAACCCCCACCACCCTGGCTCTGTGGCTCTGGTCAAGGACATGGTCTCCCAGGTCATGGACTGTCACCCTGACGCACGCTGGTTCCACATGGGGGCTGATGAGGTAAGGGGTCTGGGAGAGAGCCAGGACTCTAAAAACTGGTTACATAGCAATAAGGGGGATGTTGGGAAAATGTTCCTGAACCATGCAGTGTCATTGGCCCGTTTCATCACAGAGagaaggtcaggggtcagagtgaTTCTGTGGGATGACATGTTGAGGAAGATCAGCCCTGCCACTATTAAAGAGTCAGGCCTGCAGGATCTTGCTTCCCCAACAATATGGAACTATTTGAAGAAAATGGATACAGATGGTATTGGAACATTGATATCTAGATACCATGAGGCCGGTTTCAAGGGTATATGGTTCGCCAGTGCATTTAAAGGGGGCACAGGTATTGACCAGCGATGGACCCCTCTTGACTATCAGCTACAGAACCATCTGTCCTGGATAAAGGTCATGAACTCTATGACCAAATACCCCTCCATAACCCTCCATGGCATCCTGCTAACAGGATGGCAGAGGTTTGAGCACCATACCGTGTTGTGTGAACTCCTCCCAGTTGGCATTCCCTCCCTGGCTATGTGTCTACAGAGCTTAAAGCATGGTGCATTTGATGAAAATGCAAAGATGGAGGCTCACCACATACTGGGCTGCAACATCAAGGTGGAGAAAGATATCTGTGAGGGGAGTGGAGCCTTCTCAGGCTCTCAGATCTACCACATGGTGTTTTACATTCACACAAACCTGCAGAAGGAGGTGGAGGCCCTCATGAAACACTACCACATCAAAGGGGGTTTCAGTCGCTACCACAGAAAATATAATTTTGCAAATCCAAGAATTATAGGATTCTTCCAAGGTCGGCTGAAGAAACTGTTGGATAAGTGGGAGACGTACATAGAGAACTTCCGTATGGAGATGGAGGCTATCTACTTCCCAGACACAGTGGAGGAGTGGATGGAGGAGAATGTCAACGCCAACATGGATCTACTGAGAGAGAACGCCCGGGATGCCGAGCGAATCCTAAAACTGAACGGACAGCCCAAGTCACTGAAGACCTTATAGTGACTGGTCTTGTACAGTCTCCAGACCTGATGCCGTTGGGTTGTAACTTTGCACATAGTACCTGTTGATGGTATGTCTAAAGGAGTTTTTCAAGACCGTGTGACTTGACCAGGAAATACTCTGGACCATAGTTATGCTGGTGCTAGTTGTAGCCTGGAACTAGGGTCCACAATTTGGTTCTCTGGCTTTACAAGCCATTTACTGTTTGATTGTGCTGAATAGTAACGTGTCACATGGCTCATATTTACATTGCAAATCATCAGCTCTTTGTATACAGTATGGTAGCAGAATCTGCACTGAATCTGTTTCTTTGTATGTTtgttttcctgtttgtttatTTGTAGAGGGGAGTTCTGATGAGAATGACATTCTGTTATAACACTGTCTGTATTGCATTATCATTATAGGTTTCCTGTATATGTTTTTTCTAGATCCTCCCTGTTGCCACATAATGATGCAGCTAAGGGTTTTGCCAGTAACCATGGCATAATATGTTTTTACTGCTTGGAATTTTAGCATGAGGGCCTTGGATGGTCTATGAGTTATGAGCAGATATAAATTAATTATTAAGTGTATGCTTGAATATGAAGACTACAGAAAGGAACACTGATCCTGTTATGATCAAATTGCACTGTAAGATTCATGCAGTCTATATTTTACTGCAATGTTAACATGCCTTTACATGCCTTTAGAGCGTAGCTCTTTATGTTCTATTGATATGCTGCTGCACAGTCTCAGGTTAAAACACTGTCTGATTGTACAACATTGTTGAACATTGGTCATTACAAATTAATTGTGCAGTCATTACAAATTGAAGATTGTGTATTTTGCGCATATTAGTTGATTATGCTTGATTATCAAGTTTTTAActtgattattgttattttattgttaatACTTGATATTTTCTTTAAAGAGGAGCTCTGACAGTTCCCTGGATGTGTAGGTTATGGTATCATATTTCAAGTTTTGGTCACCTTTGGTTTCCTTTATCATAGCCTAAAAAGTACATTGATTCATAGATTTATATGATTTGATTCTGGTATGTGAATTCTGAGAGCTTAAATAAATGGGGTTCATACGCa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K14459 HEX; hexosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941556.1 True 3264 mRNA 0.44 14 54907568 54925441

Neighbor

gene id symbol gene type direction distance location
LOC110485227 LOC106606653 coding upstream 97440 54755882 ~ 54810128 (+)
LOC110486811 LOC106601768 coding upstream 176203 54720661 ~ 54731365 (+)
LOC110486816 LOC106606673 coding upstream 187266 54717610 ~ 54720302 (+)
LOC110486813 LOC106606687 coding upstream 197011 54701105 ~ 54710557 (+)
LOC118938094 NA coding upstream 251705 54655147 ~ 54655863 (+)
narfl LOC106606697 coding downstream 126 54925567 ~ 54933422 (+)
LOC110486846 LOC106601652 coding downstream 13579 54939020 ~ 54940491 (+)
LOC110539040 LOC106601832 coding downstream 415261 55340702 ~ 55394765 (+)
LOC110538788 bri3 coding downstream 499424 55424865 ~ 56123584 (+)
LOC110538766 LOC105013005 coding downstream 908670 55834111 ~ 55915904 (+)
G1187645 NA non-coding upstream 72185 54833998 ~ 54835383 (+)
G1187638 NA non-coding upstream 80610 54826415 ~ 54826958 (+)
G1187626 NA non-coding upstream 126616 54780633 ~ 54780952 (+)
G1187618 NA non-coding upstream 140411 54766482 ~ 54767157 (+)
G1188328 NA non-coding downstream 54178 54979619 ~ 54979889 (+)
G1188331 NA non-coding downstream 56791 54982232 ~ 54982474 (+)
G1188334 NA non-coding downstream 59025 54984466 ~ 54984780 (+)
G1188343 NA non-coding downstream 75043 55000484 ~ 55002271 (+)
G1188347 LOC106601778 non-coding downstream 88427 55013868 ~ 55016506 (+)
axin2 LOC105026129 other upstream 607255 54272638 ~ 54300365 (+)
G1187390 NA other upstream 642540 54264066 ~ 54265028 (+)
G1187452 NA other upstream 709553 54188567 ~ 54198015 (+)
LOC110538743 LOC106601732 other upstream 1457104 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 1884587 52907896 ~ 53046938 (+)
G1188344 NA other downstream 68233 54993674 ~ 54997295 (+)
G1188386 NA other downstream 195820 55121261 ~ 55122619 (+)
G1189040 NA other downstream 1013031 55938472 ~ 55939357 (+)
G1189738 NA other downstream 1910975 56836416 ~ 56836996 (+)

Expression


Co-expression Network