LOC110486846 (LOC106601652)


Basic Information

Item Value
gene id LOC110486846
gene name LOC106601652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54939020 ~ 54940491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558671.2
TCGTATCGAAATATCTCATATTTTTGAATGAATTTTTATTATGTAACACGTCAACTTTTTTTGTCCACTCTGGGATACCGTACGTTTGACAGGTTTGTTCAAGGAAGCTGCAGCGGGCAAAGGTCGTTTTGATGGTAAGAACTGCTTCGGAGCAGCTGTAGACTTGACAAGATTTCTTTACAATGACTTCACGAAATATATCTCGATTTTGGGAGTGGGGAAAGAAGATCATCTGTGTTGGAAGGAACTACGCCGACCATGCAAAGGAGCTGAATAACATCGTCCCAACAGAGCCCGTGTTGTTCCTGAAGACTCCATCTGCATATCTGACAGAGGGCTCACCTATCCTCATTCCCAAATACTCCAACAGTGTACACCATGAAATCGAGTTGGGGGTGGTCATCGGGAAAGGAGGCACCGCTATCCCCCAATCCTCCGCGATGCAACACGTCGCAGGGTACGCCCTGTGTTTGGATATGACAGCTCGGGACGTCCAGGATGACTGCAAGTCTAAAGGTCTTCCGTGGACTCTGGCCAAAGCGTTCAACACATCTTGTCCCGTCAGTGAATTCATCCCCAAAGAGCGGATACCCGACCCGGGAAACGTGAAGATCTGGCTCAATGTGAACGGCCAGATGCGCCAGAATGGCTGCACCTCTCAGATGATTTTCTCCATTCCCTTTCTCATCAGCTACATCAGTGAGATCATCACCTTAGAAGAGGGGGATCTGATTCTCACAGGGACTCCCAAGGGTGTATCCGCTGTGCAGGTGCACGATGAACTACATGCTGGCATAGATGATGTTGTCAGCATGACTTTTAAAGTTGGCAGACTTTGACAGATCATTAGCAAACTCTTAAAATCTGTGTTTTATGGTACATTTCTGTAATTTGCTTTTAATCCGAGCAGAGAGCTGGATGAAATGTATGGAATTACACTGGAGTCATTAGGCAGGCCTATTTCATGCAGAATGGCCACACTGATCAAGTACATTGTTGCATTTCTGAAACCAGCAGAGGGCAGTGCTTACTCAAAGATTCTAATACAGAATTACAATGTAGCCTATTAGActaaaaaaatgtattgatttTACAATGGGAAATATGATAGATACAAAACTTGAAGTCTTGTTTTGAATTTCTGGTCCAGTAGATTTCACTAAATCAGATGTTCAATAAGTGGGCCAGGTGCTGATCTTAATCTTATCCTGACCTATTGTTGTTTTCTGCTCTAGACAACAGCCTCTACCACAGCACATCACTGTGATCACAGTTAGAATGTTCGCCTTAAAAAATCTTGTCTTTTTCTCCTGTTTGTGAGGAACATTGCCCATGGCATTTTGAACTCCTGTCTACTCTACTATGAATAGGAAAAACAATAATGGGATTTTTCTCTTACAGATCCAATCCTCTTCAAAGCCAAATCAGCCTGAAGAAGTAGTCACATTAAACATTTACAGCCTGTTAATTTA

Function

NR:

description
acylpyruvase FAHD1, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01557 FAHD1; acylpyruvate hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558671.2 True 1472 mRNA 0.43 1 54939020 54940491

Neighbor

gene id symbol gene type direction distance location
narfl LOC106606697 coding upstream 5598 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 13579 54907568 ~ 54925441 (+)
LOC110485227 LOC106606653 coding upstream 128892 54755882 ~ 54810128 (+)
LOC110486811 LOC106601768 coding upstream 207655 54720661 ~ 54731365 (+)
LOC110486816 LOC106606673 coding upstream 218718 54717610 ~ 54720302 (+)
LOC110539040 LOC106601832 coding downstream 400211 55340702 ~ 55394765 (+)
LOC110538788 bri3 coding downstream 484374 55424865 ~ 56123584 (+)
LOC110538766 LOC105013005 coding downstream 893620 55834111 ~ 55915904 (+)
LOC110485236 LOC106606588 coding downstream 1095149 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 1173672 56114163 ~ 56121445 (+)
G1187645 NA non-coding upstream 103637 54833998 ~ 54835383 (+)
G1187638 NA non-coding upstream 112062 54826415 ~ 54826958 (+)
G1187626 NA non-coding upstream 158068 54780633 ~ 54780952 (+)
G1187618 NA non-coding upstream 171863 54766482 ~ 54767157 (+)
G1188328 NA non-coding downstream 39128 54979619 ~ 54979889 (+)
G1188331 NA non-coding downstream 41741 54982232 ~ 54982474 (+)
G1188334 NA non-coding downstream 43975 54984466 ~ 54984780 (+)
G1188343 NA non-coding downstream 59993 55000484 ~ 55002271 (+)
G1188347 LOC106601778 non-coding downstream 73377 55013868 ~ 55016506 (+)
axin2 LOC105026129 other upstream 638707 54272638 ~ 54300365 (+)
G1187390 NA other upstream 673992 54264066 ~ 54265028 (+)
G1187452 NA other upstream 741005 54188567 ~ 54198015 (+)
LOC110538743 LOC106601732 other upstream 1488556 53445335 ~ 53450473 (+)
LOC110539012 LOC106606743 other upstream 1916039 52907896 ~ 53046938 (+)
G1188344 NA other downstream 53183 54993674 ~ 54997295 (+)
G1188386 NA other downstream 180770 55121261 ~ 55122619 (+)
G1189040 NA other downstream 997981 55938472 ~ 55939357 (+)
G1189738 NA other downstream 1895925 56836416 ~ 56836996 (+)

Expression


Co-expression Network