LOC110485232 (LOC106606700)


Basic Information

Item Value
gene id LOC110485232
gene name LOC106606700
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54946361 ~ 54975807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556291.2
CAAGGCAGTGGGATCATTACTCATGAAAATTGAAGTATTGAGCCATGCAGAATGACAAATGCTTGTTTAAAAAGGTTAAAGACCCGTTTTCTGTCTTGTGTAATGATGCGTGACAACGGTATGAGGATAACCTTGATAAGTTCGATGACAATGCTCCAATTTTGGGGTGTTATGATTATGAAACTGCTACAGTTTTCAGCATTCAGGAAATAGGTTAATAGAGAACAGTTAGGCTACTCAACGTAAGGAAAAGTAGTATGCTGACAACATTTTGCTCCTTGCTCACCGAACAGGACAGCGACTCATGGGATGTAGTTTGGGCTGTAGAACAAGGCTCAACTTTGGAAAGGCGCTGTCCAAAGTATCCGTGTGTTTTACCATGGTCGTGATTTTCACCTATTTCTTCTACTGTTTTACCGGATTATGTGACTCCGCGCCGAGACAGATGTTCGACCATCACACTGTAAACAGAGACTATGATATATCGGACCGTACGTACGATAACCTGCGACCGTCAGCTCGACTCTATCCTCACCAGCCGGGCGCACCGACTCCTTGGaacaggacagacacttcaacGGGCGCCGCACTCCACCGTGCAGACGAACAGGTCGCCAAGCTACAGTGGGTTGAAGGCGGACTGCTCCCACAAGAGATACCGGAGAGCACCAAGGAAAATCTAGCTGCTAACGGCATCCCGGTGTCCAACACATTTGAGAGTAAGAAGTTCCCACAAGCCATCATAATCGGTGTGAAGAAAGGCGGAACGCGCGCTCTGCTGGAGTTCCTACGGATTCATCCGGACGTGAGAGCTGTCGGGGCAGAACCACACTTTTTCGACAGGTTCTACGAGAAAGGACTTGAGTGGTACAGGAACCTGATGCCTCGGACCCTGGAAGGTCAGATCACCATGGAGAAGACGCCCAGCTACTTTGTGACCAAGGAGGCTCCTCGTCGCCTCTGCACCATGAACTGCCACACCAAGCTCATTGTAGTCGTCCGCGACCCCGTGACCCGGGCAATCTCCGACTATACCCAGACGCTGTCCAAACAACCCGGCCTCCCCTCTTTCCAGAGCCTGGCCCTCAAGAATACTTCTACGGGATTGGTCGACACCTCGTGGAGCGCTGTGCGCATCGGCCTGTACGCCAAGCACCTGGAAAACTGGCTCCAGCACTTCCCCTTATCTCACTTCCTGTTCGTCAGCGGCGAGCGGCTGGTGTCCGACCCGGCGGGGGAGATGGGCCGGGTGCAGGACTTCCTGGGTCTGAAGAGGGTGGTGAGCGACAAGCACTTTTACTTCAACCAGACTAAGGGATTCCCCTGTCTGAAGAAGCCAGAGGGAAGCAGCAGGCCCCGGTGTCTGGGGAAGTCCAAAGGAAGGCCTCATCCACAGATCTCACCAGAGGTACTGCAGAGGCTCAGGGACTTCTACAGGCCATTCAACCTCAGGTTCTACCGGATGACTGGACAAGACTTTGGATGGGACTGAGCCGTCCACCAATGTTACATGGAAATCAAGCCAAAGGATGAAAATGATTACTTTAAAACATGTGGAGAGGACACTGCTTTCATCAAGACAGGAAACACAAGACTGACGTTACATTTGTCAATGAGGGAACAGGGGTTCTAGGTTACCACTTTGACTTGTGACATGGTATGCATTATACACAATGTTGGCATTTTTTGGTATTTTATGGAACAATGATATAAAGCTGTCGTTTATAGTTTCagttacagtatgtgtatgttgCTACATGTAAGAATAATGTAAGAACTCATTGTTTTGCCAGTGTAAAGTACATGAACCAGGAGATCATGATACATGTCACACAGTAAGTAGACCAAAGGATGTTGATGACTTGATACCTCTGTGTGAGGAGACTCATGTTACAATGGATTATACAAAGGATTATACCCAACCTGTTTCtgaccagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaagataCCGTAAGGAAAGTGTATTTATTGCAATAAGTGTATGTAGCTTTAATTATTCTTGTGACCACCCAACTAAGcaacaaaacatttctttatCAGGGTTGACAATCCTTTTCTTTTGACTTTTGTTTTCAATGGTACTGTAGATCTAAAAACCAAATGTGTAACTATCTATCCTTATCTGTCAAGTCAATCTAATACCAGACCCTGTTTACAGCATTTCCATTGGGACAGTATTACATTGGGACAGTATTACATTGGATGATGAACCTCTATTACAAAGACTTTGTACACAGAATGCTTTTTCTTCTCCTTGGGTAAAGAGTTAATTATGATGTGATACTTATTTCACCTTTTAACTCAAAGTTATTTAAGCCTAATTTAAAATGATGCTCTTACTTGCAAACCTTTGATGCATCCAACAATGATACCTCACTTAGGGTACAGAAACACCATTTTGCAACCAAAACAGATTTGTATGTATAGTTTACCCTTCAATGATGAAACGCAATTATAATTATCTTGACATTACCAGTTCACTTAACTCTACCAGGTCATTTGTAAATGTCATGCTTAAAGATTATGTTTGTCAAAGTTTATTTCCTTTCAATTATGTATAGGAAACTGTTTTGTATTACTCTGTAAAAATGTTCTATTAAACCATACTGAAGTTTACAACACTATTGTACATACTGAAATGAGAATATGTTGAGATGTTTAGTAAAGCTTCATTTGAAATGAACATAATGTTAGTTTTTTACTGAAACACACAGTGGTGCGGTTATGCTCTTGTGACCTGTCAGTGTTC

Function

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 6-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K09679 HS3ST6; [heparan sulfate]-glucosamine 3-sulfotransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556291.2 True 2829 mRNA 0.44 2 54946361 54975807

Neighbor

gene id symbol gene type direction distance location
LOC110486844 LOC106606699 coding downstream 7526 54933166 ~ 54938835 (-)
LOC110486831 e4f1 coding downstream 38888 54895066 ~ 54907473 (-)
LOC118938095 LOC106601785 coding downstream 56028 54889605 ~ 54890333 (-)
LOC110486827 LOC106606694 coding downstream 56916 54809618 ~ 54889445 (-)
trnaa-ugc-61 NA coding downstream 90751 54855535 ~ 54855610 (-)
LOC118938330 LOC106601777 coding upstream 28153 55003960 ~ 55011294 (-)
LOC110486834 LOC106601778 coding upstream 38048 55013855 ~ 55016528 (-)
LOC110486836 LOC106606701 coding upstream 46812 55022619 ~ 55026465 (-)
LOC110514491 LOC106606702 coding upstream 53730 55029537 ~ 55159189 (-)
LOC110516592 LOC106601772 coding upstream 233807 55209614 ~ 55242150 (-)
G1188281 NA non-coding downstream 72363 54868567 ~ 54873998 (-)
G1188275 NA non-coding downstream 91885 54854105 ~ 54854476 (-)
G1188270 NA non-coding downstream 98055 54845460 ~ 54848306 (-)
G1188259 NA non-coding downstream 128847 54816985 ~ 54817514 (-)
G1188257 NA non-coding downstream 129895 54814810 ~ 54816466 (-)
G1188327 NA non-coding upstream 389 54976196 ~ 54976771 (-)
G1188342 NA non-coding upstream 16719 54992526 ~ 54992792 (-)
G1188399 NA non-coding upstream 23726 54999533 ~ 55002316 (-)
G1188402 NA non-coding upstream 37139 55012946 ~ 55013237 (-)
G1188404 NA non-coding upstream 43183 55018990 ~ 55019272 (-)
LOC110485228 LOC106606689 other downstream 115039 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 197703 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 345912 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 475523 54409911 ~ 54470838 (-)
G1188147 NA other downstream 496341 54448883 ~ 54450020 (-)
LOC110485238 LOC106601829 other upstream 459009 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 936417 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1132137 56088292 ~ 56110984 (-)

Expression


Co-expression Network