LOC118938330 (LOC106601777)


Basic Information

Item Value
gene id LOC118938330
gene name LOC106601777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55003960 ~ 55011294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941560.1
ACAACTCCGCCCATCCCACAAGCCGCATGACAAACCTGTGTGTCAAGATTATAACTTTTCAGAGTTAAGATCAGAGAGGACACATTTGCTGAGAACCAAGAGTTGGGCTACAAGACATTGCAGACTACCAGGAATGGGTCTTCCAGCCGGGCTGTTAGAGTTCTTGGGGCCAGTAGGGTGGGGGGCAGCAGTGCTGGTAGGGGTGGTTATATTCATTCAAGTGGTTAAAAAGAACAGGGAGGAGAAACGTTCTATTTCTCCAGGAACTCACAAGTGTTTTGGTGACGAGAGAACACGGTTGAAGGAGGAAAAGTCGAATGAAGCTTCTGGAAGAACTGGAAACTCTAGGAAGAAGAGAGTAGAACCGTGCCGTCATGACGAACATGAGGATGACGTAATAAAAGGTTACGGCCTTGGACATGTTCACAAATATAAAGATGACAAAAAATTTCGACCATCTTGGTGTGATAAGGAGAATGAAGGCATTACAGAGGCAGACCATATTCCACCTAAAGATTCTCTGAAGAAGGCCCTAAACAATGTACGACTGGATCGTCTCCTACAAGTGAATCCAAGGCTTCATGAGATGATCATGAGCCTTGTTAATGACCCAACTGGACAGAAACTGTTAACCATGAGGGTTCTTTACCAGGATCACAGAGATGCTCTGACCACTGGTAGCAgcaaagaatctaaaatatgcagGTGGATTTTGACACAAACAATGCTAAGCGGAAAAGATGATTGTGCAGTAAAAATGCTGGAGCAAGCTTTTATCATGGGTCATCCTATAGCTTCCCAGATGCTCAGACATGATGCTGGATTTGTTGACGCCGCACTACGTACCGAGGGTAAAGTTGACATGTCTGATGAAGGCACAAGGAGCTACTACAGATATGGCTACACTGACCTGGTCGATGAATATCTCTACAAGGGGATAATCAACGATGGTCAAGCAAAAGACCTCAAAATATGGGTGAAAAGAGAGATGCACCTTGACCGGGATACTGCAGAGTATAAGGAGATCCTTGAAGACATTAATGATTTCTATGACTGTTTTCATATGTTGTAGGCTTACTCTTACAGCAGTATCCAAGGGGAAAGAATCAAAAGTATACCTTCCATCACTTATCGATCATATTTTGGAGTAGCCTACAATTTCATGAATTTCACGTTGATAATCTCATTTTATAATTATAATGTTTTGCTTTACAACATTATTGGTTGATCCACAGAtgttgcaatctctattgcactccacactgccctttcccacctggacgaaaggaacatctatgtgagaatgctgttcattgactacagctcagcgttcaacaccatagtaccctcaaagctca
>XM_036941561.1
ACAACTCCGCCCATCCCACAAGCCGCATGACAAACCTGTGTGTCAAGATTATAACTTTTCAGAGTTAAGATCAGAGAGGACACATTTGCTGAGAACCAAGAGTTGGGCTACAAGACATTGCAGACTACCAGGAATGGGTCTTCCAGCCGGGCTGTTAGAGTTCTTGGGGCCAGTAGGGTGGGGGGCAGCAGTGCTGGTAGGGGTGGTTATATTCATTCAAGTGGTTAAAAAGAACAGGGAGGAGAAACGTTCTATTTCTCCAGGAACTCACAAGTGTTTTGGTGACGAGAGAACACGGTTGAAGGAGGAAAAGTCGAATGAAGCTTCTGGAAGAACTGGAAACTCTAGGAAGAAGAGAGTAGAACCGTGCCGTCATGACGAACATGAGGATGACGTAATAAAAGGTTACGGCCTTGGACATGTTCACAAATATAAAGATGACAAAAAATTTCGACCATCTTGGTGTGATAAGGAGAATGAAGGCATTACAGAGGCAGACCATATTCCACCTAAAGATTCTCTGAAGAAGGCCCTAAACAATGTACGACTGGATCGTCTCCTACAAGTGAATCCAAGGCTTCATGAGATGATCATGAGCCTTGTTAATGACCCAACTGGACAGAAACTGTTAACCATGAGGGTTCTTTACCAGGATCACAGAGATGCTCTGACCACTGGTAGCAgcaaagaatctaaaatatgcagGTGGATTTTGACACAAACAATGCTAAGCGGAAAAGATGATTGTGCAGTAAAAATGCTGGAGCAAGCTTTTATCATGGGTCATCCTATAGCTTCCCAGATGCTCAGACATGATGCTGGATTTGTTGACGCCGCACTACGTACCGAGGGTAAAGTTGACATGTCTGATGAAGGCACAAGGAGCTACTACAGATATGGCTACACTGACCTGGTCGATGAATATCTCTACAAGGGGATAATCAACGATGGTCAAGCAAAAGACCTCAAAATATGGGTGAAAAGAGAGATGCACCTTGACCGGGATACTGCAGAGTATAAGGAGATCCTTGAAGACATTAATGATTTCTATGACTGTTTTCATATGTTGTAGGCTTACTCTTACAGCAGTATCCAAGGGGAAAGAATCAAAAAtgttgcaatctctattgcactccacactgccctttcccacctggacgaaag

Function

NR:

description
PREDICTED: uncharacterized protein LOC106601777

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941560.1 False 1358 mRNA 0.43 4 55003960 55011294
XM_036941561.1 True 1164 mRNA 0.44 5 55004031 55011294

Neighbor

gene id symbol gene type direction distance location
LOC110485232 LOC106606700 coding downstream 28153 54946361 ~ 54975807 (-)
LOC110486844 LOC106606699 coding downstream 65125 54933166 ~ 54938835 (-)
LOC110486831 e4f1 coding downstream 96487 54895066 ~ 54907473 (-)
LOC118938095 LOC106601785 coding downstream 113627 54889605 ~ 54890333 (-)
LOC110486827 LOC106606694 coding downstream 114515 54809618 ~ 54889445 (-)
LOC110486834 LOC106601778 coding upstream 2561 55013855 ~ 55016528 (-)
LOC110486836 LOC106606701 coding upstream 11325 55022619 ~ 55026465 (-)
LOC110514491 LOC106606702 coding upstream 18243 55029537 ~ 55159189 (-)
LOC110516592 LOC106601772 coding upstream 198320 55209614 ~ 55242150 (-)
LOC110486847 LOC106606650 coding upstream 243403 55254697 ~ 55276671 (-)
G1188399 NA non-coding downstream 1644 54999533 ~ 55002316 (-)
G1188342 NA non-coding downstream 11168 54992526 ~ 54992792 (-)
G1188327 NA non-coding downstream 27189 54976196 ~ 54976771 (-)
G1188311 LOC106606697 non-coding downstream 29509 54931724 ~ 54974451 (-)
G1188281 NA non-coding downstream 129962 54868567 ~ 54873998 (-)
G1188402 NA non-coding upstream 1652 55012946 ~ 55013237 (-)
G1188404 NA non-coding upstream 7696 55018990 ~ 55019272 (-)
G1188408 NA non-coding upstream 15826 55027120 ~ 55027376 (-)
G1188412 NA non-coding upstream 26460 55037754 ~ 55038280 (-)
G1188459 NA non-coding upstream 150810 55162104 ~ 55162455 (-)
LOC110485228 LOC106606689 other downstream 172638 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 255302 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 403511 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 533122 54409911 ~ 54470838 (-)
G1188147 NA other downstream 553940 54448883 ~ 54450020 (-)
LOC110485238 LOC106601829 other upstream 423522 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 900930 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1096650 56088292 ~ 56110984 (-)

Expression


Co-expression Network