LOC110486834 (LOC106601778)


Basic Information

Item Value
gene id LOC110486834
gene name LOC106601778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55013855 ~ 55016528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558657.2
TCTGGCAAACATTTCTAACTGCGTCAAGAGTATAAGAGCTCAGCTCAGAGAGGACATTTGCTGAGAAACCAGAGTTGGGCTACAAGACATTGTCGGCTACCAAGAGTTGAAATGGGTCTTCCAGCCTTGGGTCTGATACCGTTTTTGGGGCCCCTTGCGTTTCCAGTAGCATTGGGAACAGTCGCAGTAGGGGGGTTTATATTGATTAAGGCGATTCATAAGAAACCTTCGTATCATCCAGGAAGTCCCATAATAACACATTCCGTGAAGGTAAAGTCAAATAATGCTTCTGGAAATGAACCCACTGGAAATGCTGCCAGCAAGACGACAGAAGGACAGCAGAGCAGCAATGAAACTACCATCATAATTGCTTACGGCCTTGGAGTGGTTGATACTTATAAAAATGTTAAAAAAGGTAGACCATCTCAGTTTGGTCCGGGTAACTTTCGCATGGCAGAGGCAGACCATATTCCACCATTGGCTTCTCTGAGGATAGCCCGAAACCATGAACGACTGGATCGTCTCCTACAAGTGAATCCAAGGCTTCATGAGATGATCATGAGCCTTGATTATGACCCAACTGGACAGAACCTGTTAACCATGAGGGTTCTTTACCAGGATCACAGAGATGCTCTGACTACTGGAAACAGCAGGGAATCTCAAGTATCCAGTCGTCTGCTGGCAGAGACAATCGTAGACGGAGATGCTGCACTTATGCTGAGGAAGGCTTTTATCATGGGTCATCCTATATCTTCCTGGCAGCTCAGAGAAGACGCAGGATTGGCCGCACCATATACCGATGGTAACATTGACATGTCTGATGAAGGAACAAGGCAGTACTACAGATATGGCTACATTGAGCTGGTCGAAGCATACCACAAGAAGGGGATAATCAACAAGAATCAAGCAGAACAGCTCATTGCATGGGTGAAAAGAGAGATGTACCTGGACCGGGATACCCAAGAGTATAAGGAGATCCTTGATGACATTAAACGTCATATTTGTGTTTTCCGGTGGTAGAAATAGCAAACAAACTCAGACAACACAGAGTAAATCCAGATTGTGTAATCTAACATGCTGGCTAGACCGGACGCGTCACGTgcgcgagcgtcgcaaaatacattttgaaatacaTTTATGTACGATAGCGCACGTGCATAGATGTTTGGGTGTAACGGGAGTTCCCAAGTTAAAAACGTTTCTATGATATGCAAATTATGGAATTCAGTATAGTTGGATTCTAGTTTGAAATATACTAATTCATGTTGCCATTCTAGAACTCATTGATTAATTTACATGTATAAGGAATGCATATGCTGGGGTCAAGGAAGGGTAGATAGGGACTTGTGGAAAGTTACAGTGTAGAAAGTTCATATTCTGCTCCATGTTTCTAAGGAGGGAGTCGAAGGGCAAtagttagtctctgataaggcaggccagctgaggAACTAGGGAGGGGCGAGGAATGCATCTCGAGGTCAAGTCAACAAATGAAGTGATAAGAAACCTCGGAGGCAGGCCAGAGAGACCCACCACAATGACTCTCCTACTGCAgtcctatttcacacatataCTTCCATGCATGAAGGTTTTAGTATCAGGCAGTGCTATAACTACACCAGTGAGAAGAACCAATTACGTTTCTGCCTAGCAACAGCGATGTATTGGCTGTCTAGATGTGTAAGGACATGATCCCACATATTAGAAGGTAATAAATATATCTGCTTGTGTAATCATGCCTTGTCTTTGCAGCTGtgtgacccagtgggtgaataaacttggtttgagctttg

Function

NR:

description
uncharacterized protein LOC110511909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558657.2 True 1793 mRNA 0.44 4 55013855 55016528

Neighbor

gene id symbol gene type direction distance location
LOC118938330 LOC106601777 coding downstream 2561 55003960 ~ 55011294 (-)
LOC110485232 LOC106606700 coding downstream 38048 54946361 ~ 54975807 (-)
LOC110486844 LOC106606699 coding downstream 75020 54933166 ~ 54938835 (-)
LOC110486831 e4f1 coding downstream 106382 54895066 ~ 54907473 (-)
LOC118938095 LOC106601785 coding downstream 123522 54889605 ~ 54890333 (-)
LOC110486836 LOC106606701 coding upstream 6091 55022619 ~ 55026465 (-)
LOC110514491 LOC106606702 coding upstream 13009 55029537 ~ 55159189 (-)
LOC110516592 LOC106601772 coding upstream 193086 55209614 ~ 55242150 (-)
LOC110486847 LOC106606650 coding upstream 238169 55254697 ~ 55276671 (-)
aimp2 aimp2 coding upstream 272622 55289150 ~ 55293431 (-)
G1188402 NA non-coding downstream 618 55012946 ~ 55013237 (-)
G1188399 NA non-coding downstream 11539 54999533 ~ 55002316 (-)
G1188342 NA non-coding downstream 21063 54992526 ~ 54992792 (-)
G1188327 NA non-coding downstream 37084 54976196 ~ 54976771 (-)
G1188311 LOC106606697 non-coding downstream 39404 54931724 ~ 54974451 (-)
G1188404 NA non-coding upstream 2462 55018990 ~ 55019272 (-)
G1188408 NA non-coding upstream 10592 55027120 ~ 55027376 (-)
G1188412 NA non-coding upstream 21226 55037754 ~ 55038280 (-)
G1188459 NA non-coding upstream 145576 55162104 ~ 55162455 (-)
G1188461 NA non-coding upstream 148218 55164746 ~ 55165054 (-)
LOC110485228 LOC106606689 other downstream 182533 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 265197 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 413406 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 543017 54409911 ~ 54470838 (-)
G1188147 NA other downstream 563835 54448883 ~ 54450020 (-)
LOC110485238 LOC106601829 other upstream 418288 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 895696 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 1091416 56088292 ~ 56110984 (-)

Expression


Co-expression Network