LOC110514491 (LOC106606702)


Basic Information

Item Value
gene id LOC110514491
gene name LOC106606702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55029537 ~ 55159189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941563.1
TCGGAATGAATGGGCAGTTGTTTTCTGTTCATTGCGAAGTAAAGAGGGAGTGCTGAATGTTGCAATAGAGTATCGTCAGTTTACCGCCAGACAGCAGCATCACCTTGATGATGTAGCCGAACAACAACAGCAAACTCGCCAATTTTGATTTGGGACCAACGTGGCTCAATTCAGAGCTCACTGTGTGCTTGCTTTGTCCGGGACGTTAGCGCTGCCACACGACACTTCGGATGAGTCTTGGATAGTGCTCAGGGGAATTTAGCCTAGAGTTCATCACCGTTTTTGTAATGCTTTTCTTTTACAACTAATATTACCATCAGAAGCGTTGCTGATCTTTACCGTGCCAATTATTTAGCTAATGGGTCGTTTTAGTGGATGTTCCCTCATGATTTCAGTGAGAAGATGACTGCATTTACTTTGCTCTGCTCGGTCGTGTGATTGCAGTGGGATAGCGGACGCTCACATTCAACGCTGGACTGATATAGCATAGTTGTTCTAATCAAATATAaagattgttttgttttttatcagTCTCGTGCTTATCTTTGATGACAATTGCCTAGCGCTGGCATAAGTTTGAGTTGCCATAGACCGCCAAAAGACACAGAACCTAAACGTCGTTTCAACTTCTAGTCGTTTTTTTGACAACAGTCTTGACGGAGGAAGAATATGTTGATGAAGGAATATAGAATATGTATGCCGCTCACTGTGGAAGAGtACAGGATTGGCCAGCTGTATATGATCAGCAAGCACAGCCATGAGCAGAGTGAGCGTGGAGAAGGAGTGGAGGTGGTGCAGAACGAACCCTACGAGGACCCCACATATGGACAGGGACAGTTCACAGAAAAACGGGTCTACCTCAACAATAAGCTCCCTAGCTGGGCCAGGGCTGTGGTCCCTAAAATCTTCTATGTGACAGAGAAGGCCTGGAACTActacccctacaccatcacagAGTACACTtGTTCCTTTCTGCCAAAGTTCTCCATTCACATAGAGACCAAGTATGAGGACAACAAAGGCAGCAATGACAATATCTTTGACAGCGAGCCCaaaggggaggaggagatagaggtgtGCTTAGTGGATATCGCCTACGACGAGATCCCAGAGCGCTACTACAAGGAGTCTGAGGACTTGCGGTACTTTAAATCAGAGAAGACAGACCGGGGTGTTCTGCAGGAGGGCTGGATCGACAACCAGGAACCCATCATGTGCTCCTACAAATTGGTGACAGTCAAGTTCGAGGTGTGGGGTCTTCAGACACGGGTGGAGCAGTTTGTACACAAGgtTATCCGTGACGTCCTGCTCCTAGGACACAGACAAGCCTTTGCATGGGTGGATGAGTGGATTGAAATGACCATGGACGAGGTGAGAGAGTACGAGCGGGCCACCCAGGAGGCCACCAACCGTAAGATCGGCCCCTTCCCCCCATCCATCTCCATCACCGAGACCCCCTTGGCCTCAGTGGCCCGCAACGGGCCCTCCAGtgccccctccacccccctctccacgGAGCCTCCAGAGTACCTCTCCGTGCCCAAGGACCGACCCAGAAAGAAGTCAGCCCCAGAGACCTTGACCCTCCCCGACCCCAATCGCAGGGACTCAGGCTTCAGGCTGGCTAGCATCTTCTCCTGGGGCTCAACCCCTAACCCCCAGCCTGAATGAGAGGGGGACCCATAGGTGTGGTATACACCTATCTACATTCAGGGAGTGGCCATTTTGTCCCCTAGACAACTTATGTAAAAGGGAGTGTTGTTCACAGACCTCCTGTAACTTGGTGGTGTGGTAAACGCCTCTCCACAGACAGTTGCTGGTATCACCCTGAAGCCAGCTACTGTCACCAACTAACTGTGTCTTGGTCTGCTTTtgcagagagagagtcagtctgATCACCACGCAACACTTGGAGAGGAGTCTCAAGGCACACACCAAATACATGTacgcgcaaacacacactcactcacatacacacacacacacacacacacacacactgagtgtctTTTAAAAACCTCTTGAACCTCTCCATTGGTCCCATCAAAACACAGCAACCAGCACCATCTACCAGCCAGAAAGCTCATGTGGAGGTCAATTATAGTCTGATTTAATTTAGTTCACATTCCTCTGAATACTTTGCTTCTCTTCAGTGTCTCAGTCCTCTTTCATCTCAGTTGATACTGTATCTCAGGGTTTGTTACCTAGATACACAGAGATCTGATAAATAGACTCTTCAATCAGCACACTCAATCTTTCTTCATATGGATATAAATGTGTGGGATGATCAAactcatttcctcctctctccttgcaGTCAAGCCCTCTTATTGGTTGGAAATTGACACCATGTAATTTCAGATGTAATTGTGTGTTGGTTGTTATTCATGGTTTGTTGTAGGTCGCTGTGAACAGAGAAAAACGGTGGATTTCAGGAGAGTGttattttatcttgtgttttgttttgtaaATATGTATATTTAAGAATTATCTATTGTAAAATGCTGAATTCATTGATGTCTTTCAATGCTATGGAATTGCTGTAATCTCTgcattggagagagagaaagaggtctgTGTAGAGCTCTAAAGTGGAGGCGTTCTCTTTCTGAATCTGAGTTCTGTTGGTATGGTTTTGTTGGCCACGGTGCCCTTTTAAAGACATATAGAAAAATGCATGGTCTGAATATCCAGCCTCTGCTTTTCTTTTAAACTGGGGAGAAAATGTACCTTTTGAAATGTCTGTCTTCTATACGGTATGGGGCTTTTCCTTTGCTTGTTACAGACTACGACAAGGACAAAACATCTGATCAATGTTGTGATTTGGCTTTTAGGGATGATTTAAGTCATGAATTTGCaatcatgttgttgttgtgttttatatcaaATCAATAAATTAAATATTGCTCAAA
>XM_036941564.1
TCGGAATGAATGGGCAGTTGTTTTCTGTTCATTGCGAAGTAAAGAGGGAGTGCTGAATGTTGCAATAGAGTATCGTCAGTTTACCGCCAGACAGCAGCATCACCTTGATGATGTAGCCGAACAACAACAGCAAACTCGCCAATTTTGATTTGGGACCAACGTGGCTCAATTCAGAGCTCACTGTGTGCTTGCTTTGTCCGGGACGTTAGCGCTGCCACACGACACTTCGGATGAGTCTTGGATAGTGCTCAGGGGAATTTAGCCTAGAGTTCATCACCGTTTTTGTAATGCTTTTCTTTTACAACTAATATTACCATCAGAAGCGTTGCTGATCTTTACCGTGCCAATTATTTAGCTAATGGGTCGTTTTAGTGGATGTTCCCTCATGATTTCAGTGAGAAGATGACTGCATTTACTTTGCTCTGCTCGGTCGTGTGATTGCAGTGGGATAGCGGACGCTCACATTCAACGCTGGACTGATATAGCATAGTTGTTCTAATCAAATATAaagattgttttgttttttatcagTCTCGTGCTTATCTTTGATGACAATTGCCTAGCGCTGGCATAAGTTTGAGTTGCCATAGACCGCCAAAAGACACAGAACCTAAACGTCGTTTCAACTTCTAGTCGTTTTTTTGACAACAGTCTTGACGGAGGAAGAATATGTTGATGAAGGAATATAGAATATGTATGCCGCTCACTGTGGAAGAGtACAGGATTGGCCAGCTGTATATGATCAGCAAGCACAGCCATGAGCAGAGTGAGCGTGGAGAAGGAGTGGAGGTGGTGCAGAACGAACCCTACGAGGACCCCACATATGGACAGGGACAGTTCACAGAAAAACGGGTCTACCTCAACAATAAGCTCCCTAGCTGGGCCAGGGCTGTGGTCCCTAAAATCTTCTATGTGACAGAGAAGGCCTGGAACTActacccctacaccatcacagAGTACACTATCTTTGACAGCGAGCCCaaaggggaggaggagatagaggtgtGCTTAGTGGATATCGCCTACGACGAGATCCCAGAGCGCTACTACAAGGAGTCTGAGGACTTGCGGTACTTTAAATCAGAGAAGACAGACCGGGGTGTTCTGCAGGAGGGCTGGATCGACAACCAGGAACCCATCATGTGCTCCTACAAATTGGTGACAGTCAAGTTCGAGGTGTGGGGTCTTCAGACACGGGTGGAGCAGTTTGTACACAAGgtTATCCGTGACGTCCTGCTCCTAGGACACAGACAAGCCTTTGCATGGGTGGATGAGTGGATTGAAATGACCATGGACGAGGTGAGAGAGTACGAGCGGGCCACCCAGGAGGCCACCAACCGTAAGATCGGCCCCTTCCCCCCATCCATCTCCATCACCGAGACCCCCTTGGCCTCAGTGGCCCGCAACGGGCCCTCCAGtgccccctccacccccctctccacgGAGCCTCCAGAGTACCTCTCCGTGCCCAAGGACCGACCCAGAAAGAAGTCAGCCCCAGAGACCTTGACCCTCCCCGACCCCAATCGCAGGGACTCAGGCTTCAGGCTGGCTAGCATCTTCTCCTGGGGCTCAACCCCTAACCCCCAGCCTGAATGAGAGGGGGACCCATAGGTGTGGTATACACCTATCTACATTCAGGGAGTGGCCATTTTGTCCCCTAGACAACTTATGTAAAAGGGAGTGTTGTTCACAGACCTCCTGTAACTTGGTGGTGTGGTAAACGCCTCTCCACAGACAGTTGCTGGTATCACCCTGAAGCCAGCTACTGTCACCAACTAACTGTGTCTTGGTCTGCTTTtgcagagagagagtcagtctgATCACCACGCAACACTTGGAGAGGAGTCTCAAGGCACACACCAAATACATGTacgcgcaaacacacactcactcacatacacacacacacacacacacacacacactgagtgtctTTTAAAAACCTCTTGAACCTCTCCATTGGTCCCATCAAAACACAGCAACCAGCACCATCTACCAGCCAGAAAGCTCATGTGGAGGTCAATTATAGTCTGATTTAATTTAGTTCACATTCCTCTGAATACTTTGCTTCTCTTCAGTGTCTCAGTCCTCTTTCATCTCAGTTGATACTGTATCTCAGGGTTTGTTACCTAGATACACAGAGATCTGATAAATAGACTCTTCAATCAGCACACTCAATCTTTCTTCATATGGATATAAATGTGTGGGATGATCAAactcatttcctcctctctccttgcaGTCAAGCCCTCTTATTGGTTGGAAATTGACACCATGTAATTTCAGATGTAATTGTGTGTTGGTTGTTATTCATGGTTTGTTGTAGGTCGCTGTGAACAGAGAAAAACGGTGGATTTCAGGAGAGTGttattttatcttgtgttttgttttgtaaATATGTATATTTAAGAATTATCTATTGTAAAATGCTGAATTCATTGATGTCTTTCAATGCTATGGAATTGCTGTAATCTCTgcattggagagagagaaagaggtctgTGTAGAGCTCTAAAGTGGAGGCGTTCTCTTTCTGAATCTGAGTTCTGTTGGTATGGTTTTGTTGGCCACGGTGCCCTTTTAAAGACATATAGAAAAATGCATGGTCTGAATATCCAGCCTCTGCTTTTCTTTTAAACTGGGGAGAAAATGTACCTTTTGAAATGTCTGTCTTCTATACGGTATGGGGCTTTTCCTTTGCTTGTTACAGACTACGACAAGGACAAAACATCTGATCAATGTTGTGATTTGGCTTTTAGGGATGATTTAAGTCATGAATTTGCaatcatgttgttgttgtgttttatatcaaATCAATAAATTAAATATTGCTCAAA

Function

NR:

description
PREDICTED: cytoplasmic phosphatidylinositol transfer protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941563.1 False 2912 mRNA 0.46 9 55029537 55159189
XM_036941564.1 True 2840 mRNA 0.46 8 55029537 55159189

Neighbor

gene id symbol gene type direction distance location
LOC110486836 LOC106606701 coding downstream 3072 55022619 ~ 55026465 (-)
LOC110486834 LOC106601778 coding downstream 13009 55013855 ~ 55016528 (-)
LOC118938330 LOC106601777 coding downstream 18243 55003960 ~ 55011294 (-)
LOC110485232 LOC106606700 coding downstream 53730 54946361 ~ 54975807 (-)
LOC110486844 LOC106606699 coding downstream 90702 54933166 ~ 54938835 (-)
LOC110516592 LOC106601772 coding upstream 50425 55209614 ~ 55242150 (-)
LOC110486847 LOC106606650 coding upstream 95508 55254697 ~ 55276671 (-)
aimp2 aimp2 coding upstream 129961 55289150 ~ 55293431 (-)
LOC110486849 LOC106601824 coding upstream 153101 55312290 ~ 55316734 (-)
pvalb1 pvalb1 coding upstream 162410 55321599 ~ 55324310 (-)
G1188408 NA non-coding downstream 2161 55027120 ~ 55027376 (-)
G1188404 NA non-coding downstream 10265 55018990 ~ 55019272 (-)
G1188402 NA non-coding downstream 16300 55012946 ~ 55013237 (-)
G1188399 NA non-coding downstream 27221 54999533 ~ 55002316 (-)
G1188342 NA non-coding downstream 36745 54992526 ~ 54992792 (-)
G1188459 NA non-coding upstream 2915 55162104 ~ 55162455 (-)
G1188461 NA non-coding upstream 5557 55164746 ~ 55165054 (-)
G1188467 NA non-coding upstream 9619 55168808 ~ 55169047 (-)
G1188469 NA non-coding upstream 10925 55170114 ~ 55170416 (-)
G1188474 NA non-coding upstream 16841 55176030 ~ 55176267 (-)
LOC110485228 LOC106606689 other downstream 198215 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 280879 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 429088 54599401 ~ 54600449 (-)
G1188127 LOC106601757 other downstream 558699 54409911 ~ 54470838 (-)
LOC110485238 LOC106601829 other upstream 275627 55434816 ~ 55509918 (-)
G1189279 LOC106601786 other upstream 753035 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 948755 56088292 ~ 56110984 (-)
G1189660 LOC106601786 other upstream 1511104 56670293 ~ 56674238 (-)

Expression


Co-expression Network