LOC110486849 (LOC106601824)


Basic Information

Item Value
gene id LOC110486849
gene name LOC106601824
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55312290 ~ 55316734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558675.2
ATTTACAAGGGCGTTACTGATGTCCACAGTAGTCAGTCTCCTGCCCATGGGCGTTATAAAGGGTAAAGGTTAATTAGTTAGGGAAGAAATTTGATCAGGGGCGGGCAGTTAAAATTTGATACTCAGACAGGTAATTCAAGCATTCCCTATTGTCACCTCAATCAGACCTATATAAATCGTCTCTGACGGACACCAGTCACCGCATAGCCTTACTCGTCTCTTTTGGATCAACGACCGGGCAAGAACCTCAACGCGGATTAAAATGTCGCTCTCATCTATCCTTTCCGCTGATGCCATAGACGCTGCTATGAAGGACTGCCAAGCACCGGACTCCTTCAACTGCAAGAAGTTCTTCCAGCAGTGTGGCTTGACCAAAAAGAGTCCCGCGGAGGTGAAGAAAGTATTCGGGATACTGGACAACGACGCCAGCGGCTTCATTGAGGAGGAGGAACTCAAATTCTTCCTCCAGAGGTTCAACCCCGGGGCCCGTGTCCTGACTGAAAAAGAGACCAAGGCCTTCATGTCTGCTGCTGATGATGACAGCGACGGCATGATTGGAGCAGATGAGTTCCAGGCCATGGTCCTATCCTGAATACCTGTACAACATCCTCCATACCTCTTTCTCCCCACAGAGTTCCAGGCCATGGTCCTATCCTGAATACCTGTACAATACCTCTTTCTCCTCGCCCCACTCCAGCGCTAGGATTTATAACTTTACTTTTCCATCTGTCAATCTATTTGGAAACATGTATTCTTTTTTTGCAAGCCTCCGGTTCAGACTACCTACAACTCACTGATTTTTATTTTTGCTTTTTGCATACGTTTTAGACAGGTCATATTATTGCCCAACATGTATCACTTACCAAATTACtgagaaaataaaataataaaatgcatTCTAAAATCTC

Function

NR:

description
PREDICTED: parvalbumin, thymic CPV3-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23925 OCM; oncomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558675.2 True 908 mRNA 0.45 5 55312290 55316734

Neighbor

gene id symbol gene type direction distance location
aimp2 aimp2 coding downstream 18859 55289150 ~ 55293431 (-)
LOC110486847 LOC106606650 coding downstream 35619 55254697 ~ 55276671 (-)
LOC110516592 LOC106601772 coding downstream 70140 55209614 ~ 55242150 (-)
LOC110514491 LOC106606702 coding downstream 153101 55029537 ~ 55159189 (-)
LOC110486836 LOC106606701 coding downstream 285825 55022619 ~ 55026465 (-)
pvalb1 pvalb1 coding upstream 4865 55321599 ~ 55324310 (-)
LOC118936431 LOC106601789 coding upstream 17725 55334459 ~ 55341851 (-)
LOC110519575 LOC106606659 coding upstream 78130 55394864 ~ 55419061 (-)
LOC110485238 LOC106601829 coding upstream 118402 55434816 ~ 55509918 (-)
LOC110538789 LOC106606674 coding upstream 216513 55533247 ~ 55574537 (-)
G1188675 NA non-coding downstream 7404 55304637 ~ 55304886 (-)
G1188669 NA non-coding downstream 24076 55284446 ~ 55288214 (-)
G1188638 NA non-coding downstream 57808 55243545 ~ 55254482 (-)
G1188632 NA non-coding downstream 105092 55205846 ~ 55207198 (-)
G1188693 NA non-coding upstream 10339 55327073 ~ 55327354 (-)
G1188696 NA non-coding upstream 23039 55339773 ~ 55340366 (-)
G1188717 NA non-coding upstream 55465 55372199 ~ 55372529 (-)
G1188682 NA non-coding upstream 113000 55429734 ~ 55432178 (-)
G1188744 NA non-coding upstream 200456 55517190 ~ 55517458 (-)
LOC110485228 LOC106606689 other downstream 480968 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 563632 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 711841 54599401 ~ 54600449 (-)
G1189279 LOC106601786 other upstream 595490 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 791210 56088292 ~ 56110984 (-)
G1189660 LOC106601786 other upstream 1353559 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1764083 57054453 ~ 57085521 (-)

Expression


Co-expression Network