pvalb1 (pvalb1)


Basic Information

Item Value
gene id pvalb1
gene name pvalb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55321599 ~ 55324310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558678.2
GGAcaatccccccaccccctccggTGTCGGTTACATTATGCCTCGGGTTTCGGTTGAGTGAAAGTATATAAGGTCAGCAGTATCGATGGGAACACCACTCGCTGCAGTCGCCTGAAGTCTTCTCTATCAACCGTTCACCAAAGACGTCAGAGCTCAAAATGGCCTGTGCCCATCTGTGCAAGGAGGCTGACATCAAAACCGCATTGGAAGCGTGCAAAGCCGCCGACAGCTTCAACTTCAAGACCTTCTTCCATACGATTGGCTTTGCCTCGAAGTCCGCCGACGACGTCAAGAAGGCTTTCAAGGTCATTGACCAGGATGCAAGTGGCTTTAttgaggtggaggagctgaaGCTGTTCCTTCAGAACTTTTGCCCCAAGGCCAGGGTACTTACCGATGCAGAGACAAAGGCTTTCCTCAAGGCTGGTGATGCCGATGGTGATGGCATGATTGGAATTGATGAGTTCGCTGTATTGGTTAAGCAATAAAGAGCAACTGACCAAGACCTCACCTGAAGAAACAATATTGCCCAAGACCTCCCCATTTCATCTGAATATAAAtactttttatacatttgcttgCAAGAAGTTTCCTCCTGTGCGGCACACTGTCCAAAATGATGATTGTGAATGTAGCGCGGATGTGTTCATGTCTTATACGAATTTTGCTTACTGTAAAATCTATGATGCACTTTTCAGGAAAGGACGATAGATAAAAAATAATCAATATTCTTTTGGAATAAAAGGTCTTTGTATTATTT
>NM_001195410.1
ATGGCCTGTGCCCATCTGTGCAAGGAGGCTGACATCAAAACCGCATTGGAAGCGTGCAAAGCCGCCGACAGCTTCAACTTCAAGACCTTCTTCCATACGATTGGCTTTGCCTCGAAGTCCGCCGACGACGTCAAGAAGGCTTTCAAGGTCATTGACCAGGATGCAAGTGGCTTTAttgaggtggaggagctgaaGCTGTTCCTTCAGAACTTTTGCCCCAAGGCCAGGGTACTTACCGATGCAGAGACAAAGGCTTTCCTCAAGGCTGGTGATGCCGATGGTGATGGCATGATTGGAATTGATGAGTTCGCTGTATTGGTTAAGCAATAA

Function

symbol description
pvalb1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system and myotome.

NR:

description
parvalbumin beta 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558678.2 False 760 mRNA 0.45 5 55321599 55324310
NM_001195410.1 True 330 mRNA 0.51 4 55321871 55323337

Neighbor

gene id symbol gene type direction distance location
LOC110486849 LOC106601824 coding downstream 4865 55312290 ~ 55316734 (-)
aimp2 aimp2 coding downstream 28168 55289150 ~ 55293431 (-)
LOC110486847 LOC106606650 coding downstream 44928 55254697 ~ 55276671 (-)
LOC110516592 LOC106601772 coding downstream 79449 55209614 ~ 55242150 (-)
LOC110514491 LOC106606702 coding downstream 162410 55029537 ~ 55159189 (-)
LOC118936431 LOC106601789 coding upstream 10149 55334459 ~ 55341851 (-)
LOC110519575 LOC106606659 coding upstream 70554 55394864 ~ 55419061 (-)
LOC110485238 LOC106601829 coding upstream 110826 55434816 ~ 55509918 (-)
LOC110538789 LOC106606674 coding upstream 208937 55533247 ~ 55574537 (-)
LOC110486851 LOC106606669 coding upstream 705111 56029421 ~ 56036822 (-)
G1188675 NA non-coding downstream 16713 55304637 ~ 55304886 (-)
G1188669 NA non-coding downstream 33385 55284446 ~ 55288214 (-)
G1188638 NA non-coding downstream 67117 55243545 ~ 55254482 (-)
G1188632 NA non-coding downstream 114401 55205846 ~ 55207198 (-)
G1188693 NA non-coding upstream 2763 55327073 ~ 55327354 (-)
G1188696 NA non-coding upstream 15463 55339773 ~ 55340366 (-)
G1188717 NA non-coding upstream 47889 55372199 ~ 55372529 (-)
G1188682 NA non-coding upstream 105424 55429734 ~ 55432178 (-)
G1188744 NA non-coding upstream 192880 55517190 ~ 55517458 (-)
LOC110486836 LOC106606701 other downstream 295151 55022619 ~ 55026465 (-)
LOC110485228 LOC106606689 other downstream 490277 54813122 ~ 54831352 (-)
LOC110486825 LOC106606691 other downstream 572941 54741479 ~ 54748709 (-)
G1188186 LOC106588841 other downstream 721150 54599401 ~ 54600449 (-)
G1189279 LOC106601786 other upstream 587914 55912224 ~ 55915885 (-)
LOC110485237 LOC106606659 other upstream 783634 56088292 ~ 56110984 (-)
G1189660 LOC106601786 other upstream 1345983 56670293 ~ 56674238 (-)
LOC110486894 LOC106601810 other upstream 1756507 57054453 ~ 57085521 (-)

Expression


Co-expression Network