Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110539040 |
| gene name | LOC106601832 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 55340702 ~ 55394765 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine/threonine-protein kinase LMTK2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941571.1 | False | 7387 | mRNA | 0.50 | 14 | 55340702 | 55394765 |
| XM_036941572.1 | False | 7341 | mRNA | 0.50 | 14 | 55340702 | 55394765 |
| TU1355596 | True | 1057 | TUCP | 0.49 | 6 | 55340724 | 55366316 |
55,320,000
55,330,000
55,340,000
55,350,000
55,360,000
55,370,000
55,380,000
55,390,000
55,400,000
55,410,000
55,420,000
55,430,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486846 | LOC106601652 | coding | upstream | 400211 | 54939020 ~ 54940491 (+) |
| narfl | LOC106606697 | coding | upstream | 407280 | 54925567 ~ 54933422 (+) |
| LOC110486830 | LOC106606695 | coding | upstream | 415261 | 54907568 ~ 54925441 (+) |
| LOC110485227 | LOC106606653 | coding | upstream | 530574 | 54755882 ~ 54810128 (+) |
| LOC110486811 | LOC106601768 | coding | upstream | 609337 | 54720661 ~ 54731365 (+) |
| LOC110538788 | bri3 | coding | downstream | 30100 | 55424865 ~ 56123584 (+) |
| LOC110538766 | LOC105013005 | coding | downstream | 439346 | 55834111 ~ 55915904 (+) |
| LOC110485236 | LOC106606588 | coding | downstream | 640875 | 56035640 ~ 56088193 (+) |
| LOC110486855 | bri3 | coding | downstream | 719398 | 56114163 ~ 56121445 (+) |
| LOC110538765 | LOC105013005 | coding | downstream | 1201856 | 56596621 ~ 56674315 (+) |
| G1188544 | NA | non-coding | upstream | 15318 | 55319320 ~ 55325384 (+) |
| G1188543 | NA | non-coding | upstream | 21461 | 55319026 ~ 55319241 (+) |
| G1188540 | NA | non-coding | upstream | 27411 | 55312328 ~ 55313291 (+) |
| G1188535 | NA | non-coding | upstream | 44335 | 55296100 ~ 55296367 (+) |
| G1188534 | NA | non-coding | upstream | 45856 | 55294581 ~ 55294846 (+) |
| G1188584 | LOC106601830 | non-coding | downstream | 14500 | 55409265 ~ 55414178 (+) |
| G1188586 | NA | non-coding | downstream | 18205 | 55412970 ~ 55413370 (+) |
| G1188620 | NA | non-coding | downstream | 100022 | 55494787 ~ 55495158 (+) |
| G1188743 | NA | non-coding | downstream | 122540 | 55517305 ~ 55517533 (+) |
| G1188386 | NA | other | upstream | 218083 | 55121261 ~ 55122619 (+) |
| G1188344 | NA | other | upstream | 343407 | 54993674 ~ 54997295 (+) |
| axin2 | LOC105026129 | other | upstream | 1040389 | 54272638 ~ 54300365 (+) |
| G1187390 | NA | other | upstream | 1075674 | 54264066 ~ 54265028 (+) |
| G1187452 | NA | other | upstream | 1142687 | 54188567 ~ 54198015 (+) |
| G1189040 | NA | other | downstream | 543707 | 55938472 ~ 55939357 (+) |
| G1189738 | NA | other | downstream | 1441651 | 56836416 ~ 56836996 (+) |
| G1189675 | srebf1 | other | downstream | 1483163 | 56877928 ~ 56925607 (+) |
| G1189819 | NA | other | downstream | 1659688 | 57054453 ~ 57055617 (+) |
| LOC110514101 | LOC106606600 | other | downstream | 2201255 | 57522756 ~ 57640558 (+) |
| G1188571 | NA | non-coding | downstream | 3183 | 55369499 ~ 55369729 (+) |
