LOC110538766 (LOC105013005)


Basic Information

Item Value
gene id LOC110538766
gene name LOC105013005
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55834111 ~ 55915904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941578.1
ACGCTTTCTgaagctctctctctttttatgtCACTATCGCTGTTTGCATGTAGACGCAGCCAATCTCTTCCCTATGACGCCGGCGAGGCTGGGCTCAGACGGGTTTGATCATAATATTTAACACACCCACCCAGTAAGAGCACGATACTAGTTCGAATGAGAAGTATAACAGCCACGGGACAAGTGGAAGCGAAAATCTCTGCACCTGCCAAGCGGTGTAGCCTACTGGCTCTGCTGTTCCTTGAACGGAAAGACGGAGACGGGagatttatatttttgacaggaTCTGGCCTAGGCTTGCATCCAGGTATCTTCAGCTGACAAAGCatcacatgtttttttttaaatctcgtCGATTTTTTTGCGTTGCTTTTCTTTAACGCATTTTTTTGTGCCTGTTGCTATTTCCTACAAGGACGGTGGCTACATTTTTTAATCTGAAATTGAATAAAGACTGTCCCTCGGACTTTTAACAAAAATGACGATTGGACAGCATTGACACGTTTTTATGCTCAGCATTGCATGTTCTGAGGATGGAACAGTGCTTTCGCAACGCAATTGTGCTAAAACACGTTTAAAATTCCCTAAACTGTTCACTGCTATTACGATTAGATATTGTTTTGTGCCGTATTCAGAATAGCCACAGACCTATTTGCTTTAAGGTGCCTGCTCTCCGCAATGAGTCGGCATGTCCATCTGGTTGAATATGAATAATTCAGTCTTTTCTAAAAGACCAGCGCTCTGTGCGTAAACATGGAGTTTCTGATATAACACGGATTATGTTTGGAATGACCAGAAAAAATATCTAAATTATCTACATTGGGTTTTTGCTCCATATTTCACATGTACtatacttttttatatatatcgGTGTTGTGCGCTGCTTTTATGGTTTAGTGATATAACAACAACTACTTAGAAGTGAATCCTGTACAAAATGATCAAGATGATACTGTTTCGTAAATTTCGAGTTTTGATACTCATGGTGTTTTTGGTGGCGTGCACCATGCACATTATGATAGACTTGCTCCCAAAACTAGAGAAGCGAGCGGCGGGACCGGAAACCGGCAACGGTGGCTGCCAGTGCACTCACAACCCGAGCGAGGAGGCCGGGAGCTGGGGGAAGCAACGCGCTAGGTCGGTGGCGGAACCGGGCTGGCCTAACAAACACACGCTGAGAATCCTGCAAGATTTTAGCAACGAGCCGAGCTCAAACCTCACGTCCCATTCCCTGGAAAAAATCCCTGCCGCTGGGGAGAGAGCGGAGTCTTTCAAACGAATGAAACAGTACGACGGGGCAGCGGATAACCAGAAGCCGCTCATCAGAGACGCCAGCCGGGGTAAGAACGTTGCTGCGCCCGGTATCTTCCGGCTGCCGTCTCTGTTCGAGCATCCTTTATACAAGACGGACCTGCCGACCCTCACAGACGACGACACCTTGTTCAACGTCAATACTGACATCAGGTTATATCCGAAAGCAGCGGGGAATCAAGAATGGCACAATGAAGCTAACGTGGAAGAGGAGGAGTACCCCCCTACAGGGGAGGTGACAGCCGAGTCCTACCCCAACTGGCTTCGCTTCCACATCGGTATCAACCGCTACGAACTCTACTCCAGACACAACCCTGTCCTGGACTCCCTGCTCAAGGATCTGGTCACCCAGAGGATCACCAGTGTGGTCATGAAGTCAGGAGGAACTCAACTGAAGCTCATCATGACCTTCCATAACTACGGACAGGCGCTGTTCAAGCCCATGAAGCAGACCAGGGAACAGGAGACACCCCCAGACTTCTTCTACTTCTCTGATCTGGAGAGACACAACGCTGAGATCGCTGCCTTTCAtctggacagGATCCTAGACTTCCGGAGAGTGCCCCCGGTGGCGGGAAGACTGGTCAACATGACCAGGGAGATACGGGATGTGACCAGGGACAAAAAGCTCTGGAGGACTTTCTTCATCTCCCCAGccaaTAACATTTGTTTCTACGGCGAGTGCTcctactactgctctactgagCATGCTCTGTGTGGGAAGCCAGACCAGATCGAGGGTTCTCTGGCTGCCTTCCTGCCAGACCTGGCCCTGGCCAAACGCAAGACCTGGAGGAACCCTTGGAGACGATCCTACCACAAACGCAAGAAAGCAGAgtggGAGGTGGACCCAGACTACTGTGACGAGGTGAAGCAGACTCCTCCCTATGACCGTGGTTCTCGTCTGCTGGACATCATGGACATGACCATCTTTGACTTCCTCATGGGTAACATGGACCGGCACCATTACGAGACTTTTGACAAGTTTGGAAACGAGACCTTCATCATCCATCTGGACAAtggaagaggGTTTGGGAAACACTCCCATGACGAGCTCTCCATCCTGGTGCCTCTGAGCCAATGCTGCAGAGTGAGGAAGTCGACCCACTTGCGTCTGCAGCTGCTCGCCAAGGAGGAGTACCAGCTGAGCCGTCTGATGGAGGAGTCCCTGCTGCGTGACCGCCTCCACCCCGTCCTCATCCAGCCCCACCTGGAGGCCATGGACCGGAGGCTGCGCCTGGTGCTCCAGGTCCTGGCTGTCTGCGTGGAGAAGGAGGGCTACAGTAACGTGGTGGAGGTGGACGACCACCACTGGGCCAGAGAAGCCAGAGGGGGCAGGGACACAGCCACCCACAGGAACCCAGGGCACAGGTAGTGAGGCCTGgctaggaagagagggagatggggggtggaggggtggtaCCCCTGGTTCTCCCGCTTCTCCCCATCCTGGACCTCCAAAGAGACTACCGTTGATGGTGAACCAACCATGGGTGTCTGGTCTCACGGAGAGACTGACTGGATCCTGTGACTGTGCGGGAGCCGCCATTTTGAATTCAGTGAATTCCGAGACTTGCCGTCAATGCCTCTATGGAACCTCCCATGTACGTGTGTTTATATATAGGTACTGTTGGTCCACAGATATAGCAGTGagctgaggagagaagaggcctgGTCTTTGCTAAGTACCAATGTTTTATTACTTCTCCTGGACATGATAAATAGGGACCATTTTGATTTTACTTTGTTGGTTTTCTTATTTTACTTTTGGGGGGTTGTTTGAATGCGAAGGCTATCATTGTTTGCTCGGGTTAGCGCtaagctagctacagtatatttACACAACCAAATGAGATTTTACTTTAACAAGTTAAAATGTGGTTTGAGATTAATTTATGCACAGTAACTGGAGGAACGGAATAGAAGGTTTGTAAAGCTTTCATTTTAAAGGGAGAGTATGAAAAGAATATAGTATATTATTTATGATGAATGTCAGTGTGACCGTTATTTCAGTTGCCTCCATTTTCAACCCATCACTATCTATGACTTTGCCTATAGGCCTCCATTACTATGAGACATTATACAAGAGGCTGTTTACAGTACAGAAAGTACCTGGTATTTACTAAGAAATTACATGGTAAAATGGTAATTGTACAGTAATACCCCATTAATTACTACATAAAGTACTCATTTGGTACTTTGGGATTCAAACAAGCATTTAAATATACACCATTTTGATCCAGGTAGTTCCCAATTGTGGTGAATTTTAAGCATAAAGTATAGTGAAAGCCCCAGCTAGAACTCAGTGATGCCACATCGTTTCCTAATAAGTACCACCTAAATACCCGTCGAAGCAGTACACCATTAAAGAAAGTGCTACCGGTTTCCTTTTCAATAAAGCTTTCAGTTCAACTTAAATTCAGTGTTCAAAGCCTGGATGGAAGCAGCTCTCTTAAACAAGGGCTCTTATTGAAGCACCTCTCAGCAGCCCAGAAGTTGACTAGTGTTGAGTGCCCTTGCCCTCGTCCATTAATATTAGATATCATTCAATCTTTCCATTTCTTTTCATCAAAGCCTTCCATCAAAATGTGTCACTCGTTCATGGTTGGCACTTAAGATAATTGCTGCCCCATTTATTCAGAAATTCTGCATTTTTGACTGAGGAACTTCTAAATCAATGCTTTGCTGGAATGGCTGGAATGAAAACATGCTGCGTGGTTTACTAGGACATGTTTTTCAAGGACATGAGAATAGCCTTTACAGGAAGTTGTGATAGATGATGACAGTGTGACCGACATGGCTGAAACGTTTGTTTTTGCTTAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGCTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGCTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCATGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGCTGGCATGGCAGTCCTGGCTTACAGGATGTGGATACAAAGGGTACctcccaaatgacatcctaactccatagggctctggtcaaaagtagtgcactatatatggaatagggtgcgatttgggattcatacatataataataatacaggaCTATGTAAATACTGCCATGAGAGAATATCAATCTGACACTATTCATTTAATAGGCCTTCGAGGTCTTGGTAAAAATCCCCATGTATCTGCATATCAACAAATGAGAGATTTTTGCTGTTTTTCCCCCAAAATACATGATCTCTTTGCTTTATCCCCACGTGAGATGATTTTATTACCAACAATATCTCACCAGTTTTGTTCACACTTCACGCAGCCTCAAGTTGACGTCAGTATCAGCGAAATGATTATTTGGGAGAAATAGTCTAGTCTCTATCCATGTGGATGTAAAGATAGGTTGGAACTGTGACTACAGTGTATACCAGTATACAAGTCAGATGCACTACCccgttgtcatgccattcatctttTATACCAACTAAAGTTACCATTACAACACCAAACAAATGTCAAATGCAGTTTTCTGTTACAATCCAGGCTACACAGTCACGCACAATGTTCCTGTTGTATTGTTCAACGCTTTTCCAAATGAAAAGGATTTATTGACGTGTCATGACATTTAAACATGGATGTGGAAATAAGGTTTTTCTCTTTTTGAAACATTTCTCTTTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATATTTTGGTACTATTTACTGTTATGTCCATTTTATGATCTGAAAAAGCTGTCTTTGATTGCTGGAAGCGTTGAGCTCTATACAGGCGTTCTATATTCCACCAATAGCCCCTAGAATCTGGCTACGTATGGCTAACCTGGTGCCTGTGGAATGTTGGGTATACTGAATGTTTCAGGTGGCCATACGAACAGGACTACAACTACATAGAGGTCACACTACAGCCTGTGTGACCTGGATCCTCAGACTAAGTTGAAAGAGTTAACATTATACATTTacgtttgagtcatttagcagacgctcttatccagagtgacttacagtagtgagtgcatacatttttgtactggtcctccgtgggaatcgaacccacaaccctggagtTGCTCTACCAACTCAGCCTTCTCCTCCCTTCATACAGCAGCAGTTAAAGGGTTAACTCAGCCCTGGGCGTTGTACTTGCAATTTTCATATTGTCAGTGTAAATATCTATAAATATATTGGAAGACCTAAGAGGCTGCAGTGCCGCAGCGATACGCTTCTGTTCTGTTTTCTCCTATTGCATTGTTGCTGTGAACATCTGTTAGCTAAATGATAAAGGTGTGCAATAAAAAAATTACaacaaaga

Function

NR:

description
extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941578.1 True 6084 mRNA 0.45 10 55834111 55915904

Neighbor

gene id symbol gene type direction distance location
LOC110539040 LOC106601832 coding upstream 439346 55340702 ~ 55394765 (+)
LOC110486846 LOC106601652 coding upstream 893620 54939020 ~ 54940491 (+)
narfl LOC106606697 coding upstream 900689 54925567 ~ 54933422 (+)
LOC110486830 LOC106606695 coding upstream 908670 54907568 ~ 54925441 (+)
LOC110485227 LOC106606653 coding upstream 1023983 54755882 ~ 54810128 (+)
LOC110485236 LOC106606588 coding downstream 119736 56035640 ~ 56088193 (+)
LOC110486855 bri3 coding downstream 198259 56114163 ~ 56121445 (+)
LOC110538765 LOC105013005 coding downstream 680717 56596621 ~ 56674315 (+)
LOC118938096 NA coding downstream 762698 56678602 ~ 56679864 (+)
LOC118938331 LOC106606599 coding downstream 772679 56688583 ~ 56926185 (+)
G1188946 NA non-coding upstream 80535 55753287 ~ 55753576 (+)
G1188830 NA non-coding upstream 214549 55619351 ~ 55619562 (+)
G1188817 NA non-coding upstream 226558 55607303 ~ 55607553 (+)
G1188801 NA non-coding upstream 251386 55582036 ~ 55582725 (+)
G1188756 NA non-coding upstream 308131 55525658 ~ 55525980 (+)
G1189042 NA non-coding downstream 31794 55947698 ~ 55958296 (+)
G1189044 NA non-coding downstream 39281 55955185 ~ 56024767 (+)
G1189054 NA non-coding downstream 69725 55985629 ~ 56026601 (+)
G1189057 NA non-coding downstream 83532 55999436 ~ 56002971 (+)
G1189058 NA non-coding downstream 95032 56010936 ~ 56023484 (+)
G1188386 NA other upstream 711492 55121261 ~ 55122619 (+)
G1188344 NA other upstream 836816 54993674 ~ 54997295 (+)
axin2 LOC105026129 other upstream 1533798 54272638 ~ 54300365 (+)
G1187390 NA other upstream 1569083 54264066 ~ 54265028 (+)
G1189040 NA other downstream 22568 55938472 ~ 55939357 (+)
G1189738 NA other downstream 920512 56836416 ~ 56836996 (+)
G1189675 srebf1 other downstream 962024 56877928 ~ 56925607 (+)
G1189819 NA other downstream 1138549 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 1680116 57522756 ~ 57640558 (+)

Expression


Co-expression Network