LOC110486862 (LOC106606647)


Basic Information

Item Value
gene id LOC110486862
gene name LOC106606647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57048932 ~ 57053449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558689.2
ATCTGTTGGCCATTTGAGCTCCAGTCAGTTAGTTAGGAATACACATCTCCATAGGACTTTACGCATCTAGGCTTTTTAATGACTAACATGGAGGAGCAACGGTATCCGGTTAATATCCGACTGATTGGAGTAATGCACAAGGAGAAAAGCAAAATGTACATGACATCGGTGCTTTGGTCAGATCAGAATGACATCATTGTTTACAGAACCTTCAAGGACTTCAAGACACTTAATGAACAAATGAAGAAGAAATTCCCACCTGCGAACCCACTTAAAAAATCGGACAGAATTATTCCTAGATTTCGAGACTGGAGGATGAAGATTAACACAAAGAATAATGGTCCAAGCAAGTCGGTGGTCCAGCTCAAGTTTTTGGAGAAATACTGCAGCGAGCTCCTCAGCTGTGACCCGCGCGTCTCACAATGTCCTGAACTCATCCGGTACTTCCACCCCAAGGACCAAGATCTACAGCCAGAGTTTGCCAAGAATAGTATCATGATCATGCCTTCAGAGGATTCCGCTGGACATGACAAGAGTGTCAACATTGGAAACGTTACGCAGCCGTTCGTAACAGAGGCATACCGGTGCATGGCACCTTATGAGACCAAAGACACCAAGAACCGGCCGTTCAAAGTGGCCGTGGACGAAAACTTGGACGTGCTCATCAAAGACAAAGCAGGCTGGTGGCTGGTGGAGAATGAGGACAAGCGTATGGCCTGGTTCCCTGCTCCATACCTGGAGAAGGTAGAGGGGAATGAGGATGACGATAGTGACGAGTCCTATGGAGAAAGTGTGCTGTACAGTGCTGTCAGAAGCTACAAAGCCACAAATAGAGACGAGGTGTCTATGGACATTGGCTCAGTGGTGGAAGTCCTGCAGAAGTCTGACAATGGCTGGTGGCTGATCAGATACAACGGCAAGAGCGGCTTCGTACCTGCCATGTACCTGCAGCCCTACAACAACCCCCGTGTCCGCCTGGCGGCTCTCAACCTGGCCCAGCTACAGGTCCACAGCTCCAGCTCTGACCACACGCTGGCCGGACACTCCCACGAGCGCAGCCATTCCCAAGGCAACATCCTGCAGCCGCCCAGCTCCCAACCTTCCACACCAAATCAGCTCAAGCCTACCGACAAGCTCAAGTCTCATTCTTTTAATGTTCTAACTGTGCCTCGGCTTAGCCCTTCACCTGTGATGGTCACCACCCCCGCCCCGGCATACCCTAGCAAGGGCACTCCAATGCCTACTATCATGGTGGAGGTGGATGGGGAGATGGATAGACGCAAGCGCAGCCTCGCCGGCAGCATGGGAAGCGAGGGCAGCATGGGAAGCGAGGGCAGTGACTTCAGCGACGACCTCAGTTCGTCATCCTGCAGCTCGTCCCTCAACCTGAGCCGCGCCGACATGGACGAGCGTCTCCGGCGCGCCCGCACACCGCCGCCCATGGTGGCCGACCGTCTCAACCCCGACAGCGGCGTGTTGGAGGGGAGGATGGTCCACGGAAGATCTGACCCAAACATGTTCAAGATGGCCCCAACCACCCCCAAGGTGCCCCCCAGGCCCAGGGTGCAGGAGATCCTGACACGCTGCACTACAGTCACGCGCAAGAACGCCTCCAAAGCCAAGCTGTCGCCAGCGCCTGCTGTGATACTGAGCCGCTAAATTGGAGCAGTGTTGACCCAAAATGGTGGTGGGTCCACTGATCCCACTGATGAGTCATGGGTAGCCAGTTCCTCCTTAGCCTTTTAAAACCGAGGGTGAAGACTGGGTTGTGGCCAGGACATGTGGTGTGGTGTCTTGATGGATTCCAGGAAGAATCTAAAGGCTTTAGCACAGAAAGTCACTGTACTAGAAGCCGGACTGTGGGACTTATCCGTTATGAAGTTACCTGAACATGATTACACTGTGTTTTAAAGTGTTTAACTGCCTTGGGGCTGGTCATGTAACCATGAGTTGTGATATGGGAGGAAGAATCATACGTTACTGTAATACTCTGAGTCACATATTGagtctttatttttttaatgtggaAGTTTACTTCTTGCTCTGTTCGTCAGGCCTACTTCCATGCACCTGGAGATGGATACTGATAGCTGCattgtaaacattattttaatgCTGTCTATTAATTCAGGATTTATTTTGTGGATGAACAAATATTACGGTTAGGGGTTTACTGTCATTTGTCTACATTCCTGTTTTAAT
>XM_036941603.1
ATCTGTTGGCCATTTGAGCTCCAGTCAGTTAGTTAGGAATACACATCTCCATAGGACTTTACGCATCTAGGCTTTTTAATGACTAACATGGAGGAGCAACGGTATCCGGTTAATATCCGACTGATTGGAGTAATGCACAAGGAGAAAAGCAAAATGTACATGACATCGGTGCTTTGGTCAGATCAGAATGACATCATTGTTTACAGAACCTTCAAGGACTTCAAGACACTTAATGCCAAACTTTTTATCCAAAACAGGAACAAATGAAGAAGAAATTCCCACCTGCGAACCCACTTAAAAAATCGGACAGAATTATTCCTAGATTTCGAGACTGGAGGATGAAGATTAACACAAAGAATAATGGTCCAAGCAAGTCGGTGGTCCAGCTCAAGTTTTTGGAGAAATACTGCAGCGAGCTCCTCAGCTGTGACCCGCGCGTCTCACAATGTCCTGAACTCATCCGGTACTTCCACCCCAAGGACCAAGATCTACAGCCAGAGTTTGCCAAGAATAGTATCATGATCATGCCTTCAGAGGATTCCGCTGGACATGACAAGAGTGTCAACATTGGAAACGTTACGCAGCCGTTCGTAACAGAGGCATACCGGTGCATGGCACCTTATGAGACCAAAGACACCAAGAACCGGCCGTTCAAAGTGGCCGTGGACGAAAACTTGGACGTGCTCATCAAAGACAAAGCAGGCTGGTGGCTGGTGGAGAATGAGGACAAGCGTATGGCCTGGTTCCCTGCTCCATACCTGGAGAAGGTAGAGGGGAATGAGGATGACGATAGTGACGAGTCCTATGGAGAAAGTGTGCTGTACAGTGCTGTCAGAAGCTACAAAGCCACAAATAGAGACGAGGTGTCTATGGACATTGGCTCAGTGGTGGAAGTCCTGCAGAAGTCTGACAATGGCTGGTGGCTGATCAGATACAACGGCAAGAGCGGCTTCGTACCTGCCATGTACCTGCAGCCCTACAACAACCCCCGTGTCCGCCTGGCGGCTCTCAACCTGGCCCAGCTACAGGTCCACAGCTCCAGCTCTGACCACACGCTGGCCGGACACTCCCACGAGCGCAGCCATTCCCAAGGCAACATCCTGCAGCCGCCCAGCTCCCAACCTTCCACACCAAATCAGCTCAAGCCTACCGACAAGCTCAAGTCTCATTCTTTTAATGTTCTAACTGTGCCTCGGCTTAGCCCTTCACCTGTGATGGTCACCACCCCCGCCCCGGCATACCCTAGCAAGGGCACTCCAATGCCTACTATCATGGTGGAGGTGGATGGGGAGATGGATAGACGCAAGCGCAGCCTCGCCGGCAGCATGGGAAGCGAGGGCAGCATGGGAAGCGAGGGCAGTGACTTCAGCGACGACCTCAGTTCGTCATCCTGCAGCTCGTCCCTCAACCTGAGCCGCGCCGACATGGACGAGCGTCTCCGGCGCGCCCGCACACCGCCGCCCATGGTGGCCGACCGTCTCAACCCCGACAGCGGCGTGTTGGAGGGGAGGATGGTCCACGGAAGATCTGACCCAAACATGTTCAAGATGGCCCCAACCACCCCCAAGGTGCCCCCCAGGCCCAGGGTGCAGGAGATCCTGACACGCTGCACTACAGTCACGCGCAAGAACGCCTCCAAAGCCAAGCTGTCGCCAGCGCCTGCTGTGATACTGAGCCGCTAAATTGGAGCAGTGTTGACCCAAAATGGTGGTGGGTCCACTGATCCCACTGATGAGTCATGGGTAGCCAGTTCCTCCTTAGCCTTTTAAAACCGAGGGTGAAGACTGGGTTGTGGCCAGGACATGTGGTGTGGTGTCTTGATGGATTCCAGGAAGAATCTAAAGGCTTTAGCACAGAAAGTCACTGTACTAGAAGCCGGACTGTGGGACTTATCCGTTATGAAGTTACCTGAACATGATTACACTGTGTTTTAAAGTGTTTAACTGCCTTGGGGCTGGTCATGTAACCATGAGTTGTGATATGGGAGGAAGAATCATACGTTACTGTAATACTCTGAGTCACATATTGagtctttatttttttaatgtggaAGTTTACTTCTTGCTCTGTTCGTCAGGCCTACTTCCATGCACCTGGAGATGGATACTGATAGCTGCattgtaaacattattttaatgCTGTCTATTAATTCAGGATTTATTTTGTGGATGAACAAATATTACGGTTAGGGGTTTACTGTCATTTGTCTACATTCCTGTTTTAAT

Function

NR:

description
NADPH oxidase organizer 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558689.2 False 2202 mRNA 0.51 8 57048932 57053449
XM_036941603.1 True 2225 mRNA 0.51 8 57048932 57053449

Neighbor

gene id symbol gene type direction distance location
LOC110516169 LOC106601817 coding upstream 21192 57019702 ~ 57027741 (+)
LOC110517037 drc3 coding upstream 29685 57008000 ~ 57019247 (+)
LOC110486865 NA coding upstream 85915 56960598 ~ 56963017 (+)
LOC118938331 LOC106606599 coding upstream 129885 56688583 ~ 56926185 (+)
LOC118938096 NA coding upstream 369068 56678602 ~ 56679864 (+)
LOC110486876 rn151 coding downstream 32399 57085848 ~ 57089925 (+)
LOC110515850 rs2 coding downstream 36852 57090301 ~ 57092931 (+)
LOC118938613 NA coding downstream 37609 57091058 ~ 57091194 (+)
LOC110486871 rpl3l coding downstream 46753 57100202 ~ 57112612 (+)
LOC118938566 NA coding downstream 58522 57111971 ~ 57112096 (+)
G1189816 NA non-coding upstream 451 57047988 ~ 57048481 (+)
G1189804 NA non-coding upstream 31232 57017476 ~ 57017700 (+)
G1189803 NA non-coding upstream 35086 57013576 ~ 57013846 (+)
G1189802 NA non-coding upstream 36015 57012691 ~ 57012917 (+)
G1189818 NA non-coding downstream 711 57054160 ~ 57054390 (+)
G1189822 NA non-coding downstream 3519 57056968 ~ 57057222 (+)
G1189823 NA non-coding downstream 4101 57057550 ~ 57058011 (+)
G1189832 NA non-coding downstream 21136 57074585 ~ 57074861 (+)
G1189833 NA non-coding downstream 22419 57075868 ~ 57079580 (+)
G1189675 srebf1 other upstream 123325 56877928 ~ 56925607 (+)
G1189738 NA other upstream 211936 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1109575 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1682616 55340702 ~ 55394765 (+)
G1188386 NA other upstream 1926313 55121261 ~ 55122619 (+)
G1189819 NA other downstream 1004 57054453 ~ 57055617 (+)
LOC110514101 LOC106606600 other downstream 542571 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other downstream 570224 57613961 ~ 57625405 (+)
G1190568 NA other downstream 912067 57950494 ~ 57994502 (+)
G1190689 NA other downstream 987437 58040886 ~ 58041295 (+)

Expression


Co-expression Network