LOC110486894 (LOC106601810)


Basic Information

Item Value
gene id LOC110486894
gene name LOC106601810
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57054453 ~ 57085521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035612.1
GTGCGTTTTTTTTCCACGCTCGCTGTCATATGACGTACAATGTGAGAGACCGAAAGCCACCTCTTGAACAACACATGTGGGGATTTTGTTGATCGAAGCTAATGAATTCTAACAACAAGTGATCTAAATCAGTTCAGCTGTCCTTAAACTGCAAATTGTGGGGGTTTACTCACGTCTTCCAAAGCAAGATGGCAAAAAGCAATCTCCAGTTCAAGACCAACTATGCTGTTTCCAGCACTATCGAACCATTCTACAAGGGAGGAAAAGTACAGATCAGTAAAGATGAGAAATTCATATTTTGTACGTGTGGCACACGTGTCAACGTCTTGCAAATCGTTACAGGGAAGATTGTTCACAGTATTGAACAGGATGATCAGGAGGACATTACATCATTCGCCCTCAGCCTTGATGATGAGaTCCTGGTAACAGCCAGCAAGGCTCTGCTGCTGAAGCAATGGGACTGGAAGCAAGCCCAGTGCACACGCTCCTGGAGGGCCATCCACAATGTGCCCATTGCCAGCATGACCTTTGACCCCACCGCCACGCTCCTGGCCACAGGAGGCTGTGATGGCACCATAAAGCTGTGGGATGTGGTGAAGCAGTACTGTACGCACAACCTGAAGGGCTCCTCTGGGGTCGTACACCTGGTGGAGTTCCACCCAGACATAAGTCTACTGCAGCTCTTCTCCTCTGCGTCAGACTGTGGCATCAGGATGTGGGACCTGCGCTCCAGCCAGTGTCTGTGCGTGCTGCAGagccactacagccctgtcaccTCTCTTGCCTTCACTCCTGATGGAGCCTCCATGGTCAGCTCTGGCAGGGATAAGATCTGCACAGTGTGGGATCTGAAGAGCAGGACTGCCAGGAGGACAGTGCCCGTCTATGAGGCTGTGGAGAGTGTTGTGCTGCTCCCTGAGGACGAAGATTTCTCTGAGATCGGGGTGAAAACTAAAGAGATCCACTTCATCACAGCAGGCAGCAAAGgtgtgcTGAGGGTGTGGGATGCCAGCTCGGCCCGCTGTGTGTTCGCCCAGACGCTCCCCTCCGCTCCCTCCGCGGGGGGCTccgaagaggggggagaggagtatGGAGACCCCCGGAGCCTCACCTACTgcctccccctgccctcctccctAAGGCTGGCCACAGTCACAGCAGAACATAACATACTGCTCTACCAGCTGCCCTCCTTCACCACACAGCAACAGttTGTTGGCTTCAACGATGAGGTCCTGGATGTGAAGTTTCTGGGCAAGGGTGACACTCACATTGTCGTGGCGACCAACAGCTCCCAGCTCAAGGTGTTTGACCTGGCCACCAGCAGCTGTAAGATCCTCTACGGACACACAGATACCGTCCTGTCACTCGACGTGTTCAAGAAAGGGTCCCTGTTTGTGAGCTGTGCAAAGGATAAGTCAGTGCGTGTGTGGAGACAGGATCCAGACAGTGGTCAGGTGTGTTGTGTGGCCCAGGGCTGCAGCCATGCTAACGCTGTGGGCTCCATCACCTGCTCCAGgatGAAGGAGTCGTTTGTGGTGTCTGGTAGTCAGGACTGCACCATCAAGGTGTGGGATCTCCCAGAGACCATCCCGGAAACAGACGGAGACATGTTCCAGCTGACCGCCCGGGTCACAGAGAAGGCACACGACAAAGATGTGAACAGCGTGGCAGTGTCCCCCAACGACAAGCTCTTGGTGTCTGGTTCCCAGGACCGCCTGGCCAAGCTCTGGTCCCTGGGGGCCCCCGGGGCTGACCTGGCCCTCCTGGGGGTGTTCCGGGGCCACCGCCGGGGGGTCTGGTGTGTCCAGTTCTCTCCCATGGACCAGGTGCTGGCATCCTCCTCAGCCGACGGCTCCGTCAAGCTCTGGAGCCTCCAGGACTTCAGCTGCCTCAAGACATTTGAAGGCCACGATGCCTCTGTGCTGAAGCTCATCTTTGTGAGCAGAGGGACTCAGCTTCTCACAAGtgggtcagatgggCTGGTCAAGCTGTGGACCATCAAGACCAACGAGTGTGTAAAGACGCTGGATGCCCACCAGGACAAGGTGTGGGGTCTCCACGCCACCAGGAAGGACGACCGTGTTGTCACCGCCTCGGCCGACTCCAACATCACTGTGTGGACGGATGTGACCGAGGTGGAGCAGGCAGAGGAGCAGGCGAAGCAGGAAGACCAGATACTCAAGAAACAGGAGCTGTCTAACCTGCTTCATGAGAAGAAGTACCTGAAGGCTCTGGGCCTGGCCATCTCCCTGGACCAGCCACACACTGTGCTCAAAGTCATTAAAGCGATCCGCCAGGGGGAAGATGGTGCTAAGCAGCTGGAGAAGACTGTGCTGAAGCTGCGTCAGGACCAGAAAGagTCTATGCTGCGCTACTGTGCTGTGTGGAACACCAATGCCCGGAGCTGTCTGGACGCCCAGGCTGTGATCCAGGTGATGCTCACACACCTCTCCCCTGAAGAGCTGCTCCAGTACCAAGGAGCACGTGCACACCTGGAGGGACTCATACCTTACACTGAGAGGCACATGCAAAGGATAGGCCGTCTGCTGCAAGCCTCCATGTTCCTGGACTACATGTGGCAGAAGATGAGAGTGACAGGAGCTCCAGCCAGTATGGACTCGCAGGATGAGGAGATGGACACCGCCTCTCTTCAGGTGCCACACCCCCTGTTCATGATTGACAAGCGACCAGGTGAGGGTGGAGATGGGACTAaggaacagagggatggagaggagagatggaatgagGGAGAGGCGGAGGAGGACGATGGTCTCGAGGAAGATACCAACTGCCCGGCCAACatggaggatgatgatgatgatgatgaagtcaGTATCACCAGGAAAGCCTCAGTCAGGGGACAAAGGGAAGAAAATGGACAGAACGGGAAAAAAAATGGCAACCATCACTCTGGCAGTGAGGAGAGTTCAAGAGAGAAGGACCGAGGAGACCAAACAGAGGCTGAGATCCTCCTGTCTGCAGCGTCCCTTCCACCCCTCCAGGCAATCATCAGCTGATGGCAGACTGTCTGACATCAAGCCCACTAAGGATTCCATGAGTGTGAACCCGCGGGAGTCTCCTTCAGCATGGACCACTGCCTGGAGCAACAGTGTGGCTTTATAGACACTGACGGACAGAGAAGCAGGTCCTGAACGACCTTTTATAATAAACTGGTTTTGAGGTTGATAGGCCTGGCTGGCAGCCATTTTGGAAAACCGTGTAATTTTTCATAAATAGTGCCACAAGTTTTTCTTGACCATGTTAGCTCATCGGGAAAAACTCTGGGTGCTATTGGAAGCCTGCTAATGGTACCTAGTGGAAGCCTGCTACTGGTACCTAGTGGAAGCCTGCTACTAGAGGTCAGAAATTGTCGAGGCTCTACCTGTAACTTCTTCCCCATTCTTCAACAGAAACCAGTGCTTGTGAATTTTTATATTTGTATGTTGTTGTGCAGTCCTGCTCTTCCACATAAACAACACATTTTGTTTGTCATGATTACAAATGCATCTGGAATAAAATGTATGCCTTGTA
>XM_036941604.1
CGTGCGTTTTTTTTCCACGCTCGCTGTCATATGACGTACAATGTGAGAGACCGAAAGCCACCTCTTGAACAACACATGTGGGGATTTTGTTGATCGAAGCTAATGAATTCTAACAACAAGTGATCTAAATCAGTTCAGCTGTCCTTAAACTGCAAATTGTGGGGGTTTACTCACGTCTTCCAAAGCAAGATGGCAAAAAGCAATCTCCAGTTCAAGACCAACTATGCTGTTTCCAGCACTATCGAACCATTCTACAAGGGAGGAAAAGTACAGATCAGTAAAGATGAGAAATTCATATTTTGTACGTGTGGCACACGTGTCAACGTCTTGCAAATCGTTACAGGGAAGATTGTTCACAGTATTGAACAGGATGATCAGGAGGACATTACATCATTCGCCCTCAGCCTTGATGATGAGaTCCTGGTAACAGCCAGCAAGGCTCTGCTGCTGAAGCAATGGGACTGGAAGCAAGCCCAGTGCACACGCTCCTGGAGGGCCATCCACAATGTGCCCATTGCCAGCATGACCTTTGACCCCACCGCCACGCTCCTGGCCACAGGAGGCTGTGATGGCACCATAAAGCTGTGGGATGTGGTGAAGCAGTACTGTACGCACAACCTGAAGGGCTCCTCTGGGGTCGTACACCTGGTGGAGTTCCACCCAGACATAAGTCTACTGCAGCTCTTCTCCTCTGCGTCAGACTGTGGCATCAGGATGTGGGACCTGCGCTCCAGCCAGTGTCTGTGCGTGCTGCAGagccactacagccctgtcaccTCTCTTGCCTTCACTCCTGATGGAGCCTCCATGGTCAGCTCTGGCAGGGATAAGATCTGCACAGTGTGGGATCTGAAGAGCAGGACTGCCAGGAGGACAGTGCCCGTCTATGAGGCTGTGGAGAGTGTTGTGCTGCTCCCTGAGGACGAAGATTTCTCTGAGATCGGGGTGAAAACTAAAGAGATCCACTTCATCACAGCAGGCAGCAAAGgtgtgcTGAGGGTGTGGGATGCCAGCTCGGCCCGCTGTGTGTTCGCCCAGACGCTCCCCTCCGCTCCCTCCGCGGGGGGCTccgaagaggggggagaggagtatGGAGACCCCCGGAGCCTCACCTACTgcctccccctgccctcctccctAAGGCTGGCCACAGTCACAGCAGAACATAACATACTGCTCTACCAGCTGCCCTCCTTCACCACACAGCAACAGttTGTTGGCTTCAACGATGAGGTCCTGGATGTGAAGTTTCTGGGCAAGGGTGACACTCACATTGTCGTGGCGACCAACAGCTCCCAGCTCAAGGTGTTTGACCTGGCCACCAGCAGCTGTAAGATCCTCTACGGACACACAGATACCGTCCTGTCACTCGACGTGTTCAAGAAAGGGTCCCTGTTTGTGAGCTGTGCAAAGGATAAGTCAGTGCGTGTGTGGAGACAGGATCCAGACAGTGGTCAGGTGTGTTGTGTGGCCCAGGGCTGCAGCCATGCTAACGCTGTGGGCTCCATCACCTGCTCCAGgatGAAGGAGTCGTTTGTGGTGTCTGGTAGTCAGGACTGCACCATCAAGGTGTGGGATCTCCCAGAGACCATCCCGGAAACAGACGGAGACATGTTCCAGCTGACCGCCCGGGTCACAGAGAAGGCACACGACAAAGATGTGAACAGCGTGGCAGTGTCCCCCAACGACAAGCTCTTGGTGTCTGGTTCCCAGGACCGCCTGGCCAAGCTCTGGTCCCTGGGGGCCCCCGGGGCTGACCTGGCCCTCCTGGGGGTGTTCCGGGGCCACCGCCGGGGGGTCTGGTGTGTCCAGTTCTCTCCCATGGACCAGGTGCTGGCATCCTCCTCAGCCGACGGCTCCGTCAAGCTCTGGAGCCTCCAGGACTTCAGCTGCCTCAAGACATTTGAAGGCCACGATGCCTCTGTGCTGAAGCTCATCTTTGTGAGCAGAGGGACTCAGCTTCTCACAAGtgggtcagatgggCTGGTCAAGCTGTGGACCATCAAGACCAACGAGTGTGTAAAGACGCTGGATGCCCACCAGGACAAGGTGTGGGGTCTCCACGCCACCAGGAAGGACGACCGTGTTGTCACCGCCTCGGCCGACTCCAACATCACTGTGTGGACGGATGTGACCGAGGTGGAGCAGGCAGAGGAGCAGGCGAAGCAGGAAGACCAGATACTCAAGAAACAGGAGCTGTCTAACCTGCTTCATGAGAAGAAGTACCTGAAGGCTCTGGGCCTGGCCATCTCCCTGGACCAGCCACACACTGTGCTCAAAGTCATTAAAGCGATCCGCCAGGGGGAAGATGGTGCTAAGCAGCTGGAGAAGACTGTGCTGAAGCTGCGTCAGGACCAGAAAGagTCTATGCTGCGCTACTGTGCTGTGTGGAACACCAATGCCCGGAGCTGTCTGGACGCCCAGGCTGTGATCCAGGTGATGCTCACACACCTCTCCCCTGAAGAGCTGCTCCAGTACCAAGGAGCACGTGCACACCTGGAGGGACTCATACCTTACACTGAGAGGCACATGCAAAGGATAGGCCGTCTGCTGCAAGCCTCCATGTTCCTGGACTACATGTGGCAGAAGATGAGAGTGACAGGAGCTCCAGCCAGTATGGACTCGCAGGATGAGGAGATGGACACCGCCTCTCTTCAGGTGCCACACCCCCTGTTCATGATTGACAAGCGACCAGGTGAGGGTGGAGATGGGACTAaggaacagagggatggagaggagagatggaatgagGGAGAGGCGGAGGAGGACGATGGTCTCGAGGAAGATACCAACTGCCCGGCCAACatggaggatgatgatgatgatgatgaagtcaGTATCACCAGGAAAGCCTCAGTCAGGGGACAAAGGGAAGAAAATGGACAGAACGGGAAAAAAAATGGCAACCATCACTCTGGCAGTGAGGAGAGTTCAAGAGAGAAGGACCGAGGAGACCAAACAGAGGCTGAGATCCTCCTGTCTGCAGCGTCCCTTCCACCCCTCCAGGCAATCATCAGCTGATGGCAGACTGTCTGACATCAAGCCCACTAAGGATTCCATGAGTGTGAACCCGCGGGAGTCTCCTTCAGCATGGACCACTGCCTGGAGCAACAGTGTGGCTTTATAGACACTGACGGACAGAGAAGCAGGTCCTGAACGACCTTTTATAATAAACTGGTTTTGAGGTTGATAGGCCTGGCTGGCAGCCATTTTGGAAAACCGTGTAATTTTTCATAAATAGTGCCACAAGTTTTTCTTGACCATGTTAGCTCATCGGGAAAAACTCTGGGTGCTATTGGAAGCCTGCTAATGGTACCTAGTGGAAGCCTGCTACTGGTACCTAGTGGAAGCCTGCTACTGGTACCTAGTGGAAGCCTGCTACTGGTACCTAGTGGAAGCCTGCTACTAGAGGTCAGAAATTGTCGAGGCTCTACCTGTAACTTCTTCCCCATTCTTCAACAGAAACCAGTGCTTGTGAATTTTTATATTTGTATGTTGTTGTGCAGTCCTGCTCTTCCACATAAACAACACATTTTGTTTGTCATGATTACAAATGCATCTGGAATAAAATGTATGCCTTGTA
>TU1357553
CACGATGCCTCTGTGCTGAAGCTCATCTTTGTGAGCAGAGGGACTCAGCTTCTCACAAGtgggtcagatgggCTGGTCAAGCTGTGGACCATCAAGACCAACGAGTGTGTAAAGACGCTGGATGCCCACCAGGACAAGGTGTGGGGTCTCCACGCCACCAGGAAGGACGACCGTGTTGTCACCGCCTCGGCCGACTCCAACATCACTGTGTGGACGGATGTGACCGAGGTGGAGCAGGCAGAGGAGCAGGCGAAGCAGGAAGACCAGATACTCAAGAAACAGGAGCTGTCTAACCTGCTTCATGAGAAGAAGTACCTGAAGGCTCTGGGCCTGGCCATCTCCCTGGACCAGCCACACACTGTGCTCAAAGTCATTAAAGCGATCCGCCAGGGGGAAGATGGTGCTAAGCAGCTGGAGAAGACTGTGCTGAAGCTGCGTCAGGACCAGAAAGagTCTATGCTGCGCTACTGTGCTGTGTGGAACACCAATGCCCGGAGCTGTCTGGACGCCCAGGCTGTGATCCAGGTGATGCTCAC
>TU1357552
CCGAAAGCCACCTCTTGAACAACACATGTGGGGATTTTGTTGATCGAAGCTAATGAATTCTAACAACAAGTGATCTAAATCAGTTCAGCTGTCCTTAAACTGCAAATTGTGGGGGTTTACTCACGTCTTCCAAAGCAAGATGGCAAAAAGCAATCTCCAGTTCAAGACCAACTATGCTGTTTCCAGCACTATCGAACCATTCTACAAGGGAGGAAAAGTACAGATCAGTAAAGATGAGAAATTCATATTTTGTACGTGTGGCACACGTGTCAACGTCTTGCAAATCGTTACAGGGAAGATTGTTCACAGTATTGAACAGGATGATCAGGAGGACATTACATCATTCGCCCTCAGCCTTGATGATGAGaTCCTGGTAACAGCCAGCAAGGCTCTGCTGCTGAAGCAATGGGACTGGAAGCAAGCCCAGTGCACACGCTCCTGGAGGGCCATCCACAATGTGCCCATTGCCAGCATGACCTTTGACCCCACCGCCACGCTCCTGGCCACAGGAGGCTGTGATGGCACCATAAAGCTGTGGGATGTGGTGAAGCAGTACTGTACGCACAACCTGAAGGGCTCCTCTGGGGTCGTACACCTGGTGGAGTTCCACCCAGACATAAGTCTACTGCAGCTCTTCTCCTCTGCGTCAGACTGTGGCATCAGGATGTGGGACCTGCGCTCCAGCCAGTGTCTGTGCGTGCTGCAGagccactacagccctgtcaccTCTCTTG

Function

NR:

description
transducin beta-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035612.1 False 3534 mRNA 0.54 24 57054453 57085520
XM_036941604.1 False 3583 mRNA 0.54 23 57054453 57085521
TU1357553 False 536 lncRNA 0.57 6 57058249 57071274
TU1357552 True 734 TUCP 0.50 7 57080817 57085471

Neighbor

gene id symbol gene type direction distance location
LOC110486860 tom1l2 coding downstream 46463 56960592 ~ 57007990 (-)
LOC110486859 srebf1 coding downstream 96807 56911365 ~ 56957646 (-)
LOC110515093 LOC106606674 coding downstream 803528 56226179 ~ 56250925 (-)
LOC110539043 LOC106601829 coding downstream 850643 56125290 ~ 56203810 (-)
LOC110485237 LOC106606659 coding downstream 943482 56088292 ~ 56110984 (-)
nduba LOC106601814 coding upstream 8791 57094312 ~ 57099778 (-)
LOC110485244 LOC106601809 coding upstream 27388 57112909 ~ 57129442 (-)
LOC110486881 LOC106606582 coding upstream 76454 57161975 ~ 57164019 (-)
LOC110516439 LOC106601803 coding upstream 89475 57174996 ~ 57189319 (-)
LOC118936526 LOC106606576 coding upstream 522499 57598591 ~ 57612663 (-)
G1190206 NA non-coding downstream 19528 57034621 ~ 57034925 (-)
G1190204 NA non-coding downstream 24754 57029429 ~ 57029699 (-)
G1190186 NA non-coding downstream 45631 57008601 ~ 57008822 (-)
G1190180 NA non-coding downstream 61655 56992337 ~ 56992798 (-)
G1190191 NA non-coding upstream 5169 57090690 ~ 57092938 (-)
G1190242 NA non-coding upstream 66766 57152287 ~ 57152702 (-)
G1190243 NA non-coding upstream 67185 57152706 ~ 57152967 (-)
G1190265 NA non-coding upstream 110912 57196433 ~ 57250738 (-)
G1190268 NA non-coding upstream 114071 57199592 ~ 57241428 (-)
G1189660 LOC106601786 other downstream 380215 56670293 ~ 56674238 (-)
G1189279 LOC106601786 other downstream 1138568 55912224 ~ 55915885 (-)
LOC110485238 LOC106601829 other downstream 1599219 55434816 ~ 55509918 (-)
LOC110516592 LOC106601772 other downstream 1841738 55209614 ~ 55242150 (-)
G1190199 LOC106601813 other upstream 3650 57089171 ~ 57089915 (-)
G1190405 NA other upstream 410467 57495988 ~ 57499155 (-)
LOC110486915 LOC106606556 other upstream 613730 57698059 ~ 57706813 (-)
G1190628 NA other upstream 880616 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 1501804 58561680 ~ 58588526 (-)
G1190215 NA non-coding downstream 1025 57056926 ~ 57057224 (-)
G1190225 NA non-coding upstream 5142 57076416 ~ 57077150 (-)
LOC110486894 LOC106601810 other upstream 9543 57054453 ~ 57085521 (-)
G1190221 NA non-coding downstream 13980 57066501 ~ 57066837 (-)
G1190219 NA non-coding downstream 16155 57063619 ~ 57064662 (-)
G1190217 NA non-coding downstream 18481 57062101 ~ 57062336 (-)

Expression


Co-expression Network