LOC110485244 (LOC106601809)


Basic Information

Item Value
gene id LOC110485244
gene name LOC106601809
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57112909 ~ 57129442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939772.1
ATGGAGGACAGTGAGCTTATCTTTCTGGAGCGCCATGATGAGGGCACGGGCCCTACCGTGGCCTTCTCCAAAGACAAGCCTGGAGTCATGGAGGGCCCTACCGTGGCCTTCTCCAAAGACAAGCCTGGAGTCATGGAGGGCCCTACCGTGGCCTTCACCAAAGACAAGCCTGGAGTCATGGAGGGCCCTACCGTGGCCTTCTCCAAAGACAAGCCTGGAGTCAGGGAGGGCCCTACAGTGGTCTTCTCCAAAGACAAGACTGGAGTCATGGAGGCCAGGGACGCCGCTCCTCGGGCTtccacatccccctctccccctcctctccggGCTCCCTGGCTGACCTGGCAATCGCTTCGTCGCCACCCCCCCTGCCTGGTGAAGTCCTCCTCCACAGAGCTGCAGACCAAAGAGACTGGTTCCTTGAGAAGCTCCAAACCCCTCCTCAGCCTGGTCAAGTCCCTCTCCACCGAGATCTCCCACCTCGAGCCTGAGGTCTACCTCTCCAAGTCGGACTCCAAGCTCCACATGCACCCCTGGAAGCAGTTCACCCAGACCCAACCCAAGCTCCAGGAGGCTGGTTTTGGGAATGATAGCTGGATGGCACCCCCGTCCCCCATTTCCCCCACGGAGCCCAAAGGAAGTTCCCTGATGACCGAGTTCGAGGACACGCGGAGGAAGTTCTCGGAGGCCATACAGGACCCCATGAGCATGTGGGGTAAAATGATGGGGGACGAGTCGAGCTTGGGGAGCCCCAAACAGAAGGTGTCTGGGGGGGTCGGGGACTCACCTGCCTCCTTTGGTAGCTGTGGAGGTGGTGGGAGTGGGACGCCATTGAACATTGAAGATGGGAGCACAGAGACACAAGTAAGATACAGACGTGGAACAGACAGTGAACTGGGTGTGTGTGAAACCCCACTAAGGAGACCCAGGAAGGGCCTTCTGAAGCCCTCACTTTCCCCAGAGCACCATAGCCAGCTGGGGGATAGCCTCTACGAGATCTGCACCAACGGAGACCTCATCCAGGTGGTAGAGGTCCAGGGGGTCGGAACCAGTGGAGCTGGTACCAGAGGTCAGCATCGAGGAACCCATCCCCAGGCTCGAGGCAGGATTCCTGGGGTTCCTGTAGCCTCTGTGCCTGTCCGCTGGCTCTTGTTTGTGGGCGTACTTGCCTATGGGTTCTTTGTGCTCCCTCTGCCCTCCTATGTGACTGGGCTGTCCCTGGGGCTAGCATGTGGGTTCCTGTTAGGGTTGGTGGTGGTCCTGGTGTTAACGCCACGTCCGCGCTCCAGAGCTTTGCCCCCCTGGGGCACTACAGGGGCCCGGTGGTCCCAAGACAACAGCCTGCTGCCCTCGGACCCTGTTGGTGGGCCGCGCACAGATGCAGAAGTCCTGGAGGGCTGGATGAACGAGATGCCCGTGTACGACCCAGAGACCTACCACCCGTCGCTCACCCACTCTGTGTATGCCACCCTGGAGGGCAGCCGTCTACGCCTGGCCTACCCCCACACCAACATCCCCCGACAGGCAGCCTTCGACGAACCGCCCCATGAAGTCGTGTTCCTGCGCTCGCGCTGCTACCAGCTGGCCAACTGCAAGGTCTCCCTGTTGCCTGCTGCCTTGGCACGGAAGAGAGTTTGGAATAAGAAGTACCCTATCTGTATCATACTGGccgagggagaggtggggagagaggaggaggaggagagagtggaagaggggcaagaggaggaggaggaggaggagaggacagacaagcagacactcccagacacacagacacagggccTCCCCGACACTCTCTACCTTTTTGGTCGtacaggaagagagaaggaggattGGTTCCAGCACTTCCTGTTAGCCTCGAAGTCAGAGTTCAAGAGCAGCCCGATCAGAGACGTGCCCAAGTCTGagGTGTTATGCAGTGGGAGCTCCAGTATGGACAGTACGGAGCACCTGCCCTCTCTGATTGGTCTGCGTGATCTGGTGGACTACAGCTCCTACATGAGCCGCCTCATTGGCTTAGAGGGTagcagtcccagtcccagccccagcccctgcCACAGTGACCAGGGAAGCCCCACAGCCAGGATGAGGTTCCCCAGTGAGGAGGCATCAGCAGAGGGGGGCTGCCCAGCAGAGGGCCAACCGGCCTGGGTCAATGCCCTGGTGGGGAGGATCTTCTGGGACTTCCTCCGGGAGAAGTACTGGGTGGACCTGGTGGCCCACAAGATCCAGAAGAAGCTGAGTAAGATCAGGTTGCCGTACTTTGTGAATGAACTGAAGTTGGCTGATCTGGACATGGGTACCTGCATACCTCAGGCGCTCAGCATCTCCAAACCCTCACTGGACCACAgagGCCTGTGGTTGGAGTTGGAGGTGGTGTATACAGGCTGCCTACAGATGACCCTGGAGACGAAGTTGAACCTGTGTAAACTGGGGAAGGAGAAGTCCATTGGGGTGGATGCTGACGGACACATCCCAGAGACCAGCCAAGTAGGctcCAAGCCCAGGCTGTGTGTATTAGCTGACAGTGATGAGGAGTCCTCCAGTGCCGACTCGTCTGATGAGGAGGAGGTGCCGCCTACTGAACCCCAGGGAACTCTGGGAGATAAGAGCACAGGCACGCCACCACCACCAGCGACTGATGGTGGGAGTGGTGGGAGCACCGGCAGACGGTTCCTGAGGTTCGTGGACAAGATCGCCTCGTCCAAGTACTTCCAGAAGGCCACGGAGAACGAGTACATCAAGAAGAAGATCGCTGAGGTCTCCAACATGCCACTGATGCTCACTGTGGAAGTTCTAGAACTCTCAGGGACTCTGGCTGTCAACATTCCACCTCCCCCTACTGACAGGATATGGTACAGTTTCCGTGTGCCTCCCAGGCTGGACCTGCGTGTGCGTCCCAtgctaggagagagggaggtcacCTTCACACACGTCACAGAGTGGATTGAGAAGAAGCTGAGTCGAGAGTTTCAGAAGGAGTTTGTGATGCCCAACATGGATGACCTCTATCTTCCTCTCATGTCCTCCGTGCTGGACAACCCTCCAGCAGCCCAGCATTCTCCAGCCCACTCCTCACGCCGCTCCTCCAACGACTCCCAGTACTACGTGTCTGAATAGCGCCTCACTGTGGCAGTGGATGGAGAAGAAAATCAATGGAAAACGAGTGGGCATGGATCCACAGTGGAATCTGAGCAGATAGGGCTTGGTTCAGTCCTAGCTTGTGAGGGATGGTCATAGCGAAGCCTGTGGCGGGCACGTACAACATGGCATGACTGGATAGTGGCATGCAGGAGACAGTGGCATGCAGGAGATAGTGGCATGGCTATGTTCTGAGCAGCAAGAGGGACTGGTATAATCGCATAGAGCCTGGTATAGCGCCCAGCCCTACTGACTGAACTTAAACAGCACTTTGCAATAGAGAAGTGACCTGCGATAGTCCTGTAATGAACCAGGCTGATgtttattgggatgagtcttCTCCGTGAGGCAGAACTGAACGATTTCCATTAGATGGAACAGCAAAAATTCTAAATGGGCTGTATTGTAAAAATTCACACAAAAATtggctttttggtcttaatttaagtttagggttaaggaTAGGTTTTCAAAtgagattttatgactttgtggcagtGCCAGTAAGTGACCACTCTGCATAGCTTCCTCCAGAACAAAATACACTAAACTGTGTAATGAAGACAGTGAGTCCCAGTTGGCACCATATATAGATATATCATAGGAGGTtgcaaccatgtgtgtgtgataaCATTCCACCAATTCCACTCGTCGTTAACACAAGCCCATTCTCcgcaattaaggtgccaccaatccCCTGTGCTATATGgtacactgcttttgaccagggccctgctatggtagtgcactacatatggaatagggtgccattttgaataAAACAGCAATAGGTAGATATGGTCACTTGAAGGAAAGTGAATATGGGCATTACTGGTATGAACTGTCACTGTACGATGACTATGCTGTGATATACTGAATCCGTTTGTCCTCAACTCTTGAAGGTGAGCGTTGTACTCATGTTGTCCAGTGGGCTGGCCAGAACATTGGTGTGTTACTGGCCTGACAAAATGGACTCCCTGAACAATTCCTATTTTAAGTGATTGTAGCCCAGAGAAGATTCCTAGGAGATTATTGGTTCTCTAAAACTTTCATCATCAAATGGCTCCGAGTGGATTTTTGGACAGCGTACCCCCTCTTCATTCATCAACTAACCGACAATAAAGCATGTAGAAATGGACAGGCTATCAAGATAATGTGGGGAAAATAAAACTTCATAAAAATACAGTACAAATACATGATTAAGATTTCTAGTGCATCTTCTTGGTCAATTGCATACAAGGTCCAACCAAAATTTGACTTCCGTTTTTAACCGTGAGCCACCAGTGGTATAGTGGAGGGAAGCCACAAGTGCTCTTGTTTAACCAtaatttgttgtgtgtgtgt

Function

NR:

description
testis-expressed protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939772.1 True 4488 mRNA 0.54 12 57112909 57129442

Neighbor

gene id symbol gene type direction distance location
nduba LOC106601814 coding downstream 13131 57094312 ~ 57099778 (-)
LOC110486894 LOC106601810 coding downstream 27388 57054453 ~ 57085521 (-)
LOC110486860 tom1l2 coding downstream 104919 56960592 ~ 57007990 (-)
LOC110486859 srebf1 coding downstream 155263 56911365 ~ 56957646 (-)
LOC110515093 LOC106606674 coding downstream 861984 56226179 ~ 56250925 (-)
LOC110486881 LOC106606582 coding upstream 32533 57161975 ~ 57164019 (-)
LOC110516439 LOC106601803 coding upstream 45554 57174996 ~ 57189319 (-)
LOC118936526 LOC106606576 coding upstream 478578 57598591 ~ 57612663 (-)
LOC118938332 LOC106606586 coding upstream 530465 57659907 ~ 57664396 (-)
LOC110486912 LOC106601792 coding upstream 536773 57666215 ~ 57697821 (-)
G1190191 NA non-coding downstream 19971 57090690 ~ 57092938 (-)
G1190225 NA non-coding downstream 35759 57076416 ~ 57077150 (-)
G1190221 NA non-coding downstream 46072 57066501 ~ 57066837 (-)
G1190219 NA non-coding downstream 48247 57063619 ~ 57064662 (-)
G1190217 NA non-coding downstream 50573 57062101 ~ 57062336 (-)
G1190242 NA non-coding upstream 22845 57152287 ~ 57152702 (-)
G1190243 NA non-coding upstream 23264 57152706 ~ 57152967 (-)
G1190265 NA non-coding upstream 66991 57196433 ~ 57250738 (-)
G1190268 NA non-coding upstream 70150 57199592 ~ 57241428 (-)
G1190281 NA non-coding upstream 89257 57218699 ~ 57219683 (-)
G1190199 LOC106601813 other downstream 22994 57089171 ~ 57089915 (-)
G1189660 LOC106601786 other downstream 438671 56670293 ~ 56674238 (-)
LOC110485237 LOC106606659 other downstream 1001925 56088292 ~ 56110984 (-)
G1189279 LOC106601786 other downstream 1197024 55912224 ~ 55915885 (-)
G1190405 NA other upstream 366546 57495988 ~ 57499155 (-)
LOC110486915 LOC106606556 other upstream 569809 57698059 ~ 57706813 (-)
G1190628 NA other upstream 836695 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 1457883 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 1467334 58588778 ~ 58603975 (-)

Expression


Co-expression Network