LOC110486881 (LOC106606582)


Basic Information

Item Value
gene id LOC110486881
gene name LOC106606582
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57161975 ~ 57164019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941617.1
TTTGGAAAATAAATCATGGAAATTAGTTTTGCTTTATGGCATCTACCAGTGGTCTTCGCACCACACTTTCCAAGATGGCTGCCTCCCTCACAGGTTTACTAAAACCTTGGACACCAAGGGTACTCCTGGTGAGATGGAGCAGGTACAACCCTTACTACCTGGAGCCTGAGCCTCGGAAAGAGGTGTACCACATCCCAGAGACTGAGCTCACACCTGagcagaaagaggagagggagctgAAATCTGTCAGGCCCATAAAGGCAGCCACCAACTCTGTTACCAGCTCTGTTTTCAACGACCCTGTGTTGAGCAAGTTTGTCAACATGATGATGAAAGATGGTGACAAGATTATTGCCAAAGGTATCATCACACAGACATTGGAGAACATGAAGAGAAAACAGGTGGAGAAGTACCACAAAGCCCCCGAGGGAAAGAAGGCAGAGATCGAGTGTAATCCATACGCCATCTTCCACCAGGCTCTGGAGAACTGCAAGCCTGTCATTGGCCTGGCCAGCATTCAGAAAGGGGGCAAGTTCTATCAGGTGCCCATACCTCTGACAGACAACAGACGGCGCTTCCTGGCCATGAAGTGGATGATCACAGAGTGCCGGGACAACAAGCACAGACGCACACTAATGTACGAAAAACTATCCCAGGAACTGCTGGCCGCCTTCTCCAAGGAGGGCAACGTGGTCAAACGGAAACACGAACTGCACAAGATGGCTGAATCCAACAGAGCCTACGCCCACTATCGCTGGTGGTAGTCTGAGTGCAGCATTCAAAATGGGACCTTTTGGACTGGAAGGAATTCAATCCATTGTCCCTTTGGTCAAACTTGAGATGGAGTTCCTTgttggaaaaaaaaaaacataatggaCATTTGTGCAACACATCATGGGAGATTGTCTTCAATGTAGGGCATTGACAGGCTATGTAAATATACATCTCTTGGACTCCATTGTGAAATATTTGGAATGGTGTGTATCCAAGTATACTGACCACAAATACAGTTACTGTAAAAGGCTTCTTTTACTAACATTGTATTATGGTTCAATAAAGAATGATTGTGAAAACATTAAA

Function

NR:

description
28S ribosomal protein S7, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006412 translation biological_process

KEGG:

id description
K02992 RP-S7, MRPS7, rpsG; small subunit ribosomal protein S7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941617.1 True 1080 mRNA 0.46 5 57161975 57164019

Neighbor

gene id symbol gene type direction distance location
LOC110485244 LOC106601809 coding downstream 32533 57112909 ~ 57129442 (-)
nduba LOC106601814 coding downstream 62197 57094312 ~ 57099778 (-)
LOC110486894 LOC106601810 coding downstream 76454 57054453 ~ 57085521 (-)
LOC110486860 tom1l2 coding downstream 153985 56960592 ~ 57007990 (-)
LOC110486859 srebf1 coding downstream 204329 56911365 ~ 56957646 (-)
LOC110516439 LOC106601803 coding upstream 10977 57174996 ~ 57189319 (-)
LOC118936526 LOC106606576 coding upstream 444001 57598591 ~ 57612663 (-)
LOC118938332 LOC106606586 coding upstream 495888 57659907 ~ 57664396 (-)
LOC110486912 LOC106601792 coding upstream 502196 57666215 ~ 57697821 (-)
LOC110486915 LOC106606556 coding upstream 534040 57698059 ~ 57706813 (-)
G1190243 NA non-coding downstream 9008 57152706 ~ 57152967 (-)
G1190242 NA non-coding downstream 9273 57152287 ~ 57152702 (-)
G1190191 NA non-coding downstream 69037 57090690 ~ 57092938 (-)
G1190225 NA non-coding downstream 84825 57076416 ~ 57077150 (-)
G1190221 NA non-coding downstream 95138 57066501 ~ 57066837 (-)
G1190265 NA non-coding upstream 32414 57196433 ~ 57250738 (-)
G1190268 NA non-coding upstream 35573 57199592 ~ 57241428 (-)
G1190281 NA non-coding upstream 54680 57218699 ~ 57219683 (-)
G1190260 LOC106606635 non-coding upstream 62922 57226941 ~ 57272116 (-)
G1190303 NA non-coding upstream 100966 57264985 ~ 57285092 (-)
G1190199 LOC106601813 other downstream 72060 57089171 ~ 57089915 (-)
G1189660 LOC106601786 other downstream 487737 56670293 ~ 56674238 (-)
LOC110485237 LOC106606659 other downstream 1050991 56088292 ~ 56110984 (-)
G1189279 LOC106601786 other downstream 1246090 55912224 ~ 55915885 (-)
G1190405 NA other upstream 331969 57495988 ~ 57499155 (-)
G1190628 NA other upstream 802118 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 1423306 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 1432757 58588778 ~ 58603975 (-)

Expression


Co-expression Network