LOC110486895


Basic Information

Item Value
gene id LOC110486895
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57209985 ~ 57225363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941624.1
TGGATAATTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGGTAACCTCACAGTTCAGCTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941625.1
TGGATAATTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGTGTGAACCCTTTCCTGTGGAGAGACCACAGTTTCACAGAACCCCTGTTTGTTTTTCTACTAAGGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGGTAACCTCACAGTTCAGCTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941628.1
TGGATAATTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAATGCTTAAACAGGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGGTAACCTCACAGTTCAGCTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941626.1
TAATTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941622.1
TTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTAATGTAAACATAGAGCTGGTCGTGTGGCGGAGGTTGGACCAGAATGATCTTCACAAAGGTGGACCTGTGTTCAAATGCAACATATTCAATCAACAATCCTCCAATCCCAGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941623.1
TTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGTGTGAACCCTTTCCTGTGGAGAGACCACAGTTTCACAGAACCCCTGTTTGTTTTTCTACTAAGGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTAATGTAAACATAGAGCTGGTCGTGTGGCGGAGGTTGGACCAGAATGATCTTCACAAAGGTGGACCTGTGTTCAAATGCAACATATTCAATCAACAATCCTCCAATCCCAGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg
>XM_036941627.1
TACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTAATGTAAACATAGAGCTGGTCGTGTGGCGGAGGTTGGACCAGAATGATCTTCACAAAGGTGGACCTGTGTTCAAATGCAACATATTCAATCAACAATCCTCCAATCCCAGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGgtaaccgtggttgacagaggaagaacgatgattccaagcaccaccctccttttgaagcttc

Function

NR:

description
uncharacterized protein LOC110486879, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941624.1 False 1321 mRNA 0.48 7 57209985 57214613
XM_036941625.1 False 1385 mRNA 0.48 7 57209985 57214613
XM_036941628.1 False 1332 mRNA 0.48 7 57209985 57214613
XM_036941626.1 False 1293 mRNA 0.48 7 57209989 57214613
XM_036941622.1 False 1402 mRNA 0.48 6 57209992 57214613
XM_036941623.1 False 1466 mRNA 0.48 6 57209992 57214613
XM_036941627.1 True 998 mRNA 0.46 6 57209994 57225363

Neighbor

gene id symbol gene type direction distance location
LOC110486888 hn1 coding upstream 86 57196436 ~ 57209899 (+)
LOC110486893 sumo2 coding upstream 14207 57190102 ~ 57195778 (+)
LOC110486867 LOC106601804 coding upstream 35227 57164102 ~ 57174758 (+)
LOC110486882 LOC106601806 coding upstream 48093 57156086 ~ 57161892 (+)
LOC110486874 LOC106601805 coding upstream 53998 57149314 ~ 57155987 (+)
LOC118936313 LOC106606633 coding downstream 212 57225575 ~ 57243852 (+)
LOC110486898 NA coding downstream 25540 57250903 ~ 57261741 (+)
LOC118936426 LOC106601799 coding downstream 41843 57267206 ~ 57272110 (+)
LOC110486905 LOC106606635 coding downstream 50753 57276116 ~ 57291837 (+)
LOC110516540 LOC106606577 coding downstream 78082 57303445 ~ 57459461 (+)
G1189901 NA non-coding upstream 1058 57205873 ~ 57208927 (+)
G1189840 NA non-coding upstream 101903 57107629 ~ 57108082 (+)
G1189833 NA non-coding upstream 130405 57075868 ~ 57079580 (+)
G1189832 NA non-coding upstream 135124 57074585 ~ 57074861 (+)
G1189866 NA non-coding downstream 51609 57276972 ~ 57278622 (+)
G1189949 NA non-coding downstream 106396 57331759 ~ 57367492 (+)
G1189978 NA non-coding downstream 189873 57415236 ~ 57416242 (+)
G1190014 NA non-coding downstream 286288 57511651 ~ 57516717 (+)
LOC110514101 LOC106606600 non-coding downstream 310640 57522756 ~ 57640558 (+)
G1189819 NA other upstream 154368 57054453 ~ 57055617 (+)
G1189675 srebf1 other upstream 284378 56877928 ~ 56925607 (+)
G1189738 NA other upstream 372989 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1270628 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1843669 55340702 ~ 55394765 (+)
LOC110486909 LOC106601794 other downstream 398310 57613961 ~ 57625405 (+)
G1190568 NA other downstream 740153 57950494 ~ 57994502 (+)
G1190689 NA other downstream 815523 58040886 ~ 58041295 (+)
LOC110538555 NA other downstream 1311464 58521363 ~ 58557066 (+)

Expression


Co-expression Network