LOC118936313 (LOC106606633)


Basic Information

Item Value
gene id LOC118936313
gene name LOC106606633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57225575 ~ 57243852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941633.1
ctcttcataacattctggagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggccacgactgtagtatGTCATGAATATTAATTTCCTCcacaggtgtcagggaaaatgtatggagtaaaacgtACATATTTTGATTTCGATTGTAGTGACGTAAAAGTTAGTCAAATAATTGTGTTTTGTTGTTTAACCTAATTTATTCCTAACCTATGATTCTGTCACATACTGACACCCATAATTGCACCTGAAATAAGTTCAGGTCTTGATTCTCTGTATGTTATTTTGTCATTTTATTTTGGTTTATTAGGCCTACCTCATTTGTTCAGAACCTAAGCGTAAAGTCGGCCTACTCCGTGTTCCTATTGGTGGAGAGGTTCTAGAGCAGACACCACTGTGGTaaagacatactgtatatttccTGTTATTTGAAGGCTCAGTTTAGTTGTGATGTGAAGGTCTTGTATTAGCAGGATGTCTGCATTCTGTCTGTGTTGTgcaatcttcctctgtctcctttgCAGCACCTTGGCTGAGAAAGGCAGCAAGGGACTGCTGGTCCGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGGGTGTGTACATGCGCCTAACAAAAGAGATTGCAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAATCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGACTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGTGTTTTCATTCACATAGTAGAGAAGTGACAGTAGTCAAGTTCGATGGACAGCTAATAAACGAGACACACACCTGCACAGTTGGAAATGGAGGATGAAGATACGATCAATGTTTTCCAGCAACAGACAGGAGGCCTCTACTAGCATGTGAAGTACTCCCCCACATCTTCCTCCACCCCCCAGACGGCTGCTTTGCAGCTTGTCCCATTTTCCACCACAGAACCAATACCATGCGGAAGACGTCCTGCTCACAGTTCTACATAACTGTTGATGTCTAGTGTTTTCATTCTTGCCTTTGTTTCCTTCCTGTTTTGTACATAAACAACCTCCGCTAAAACAACTCAGATTTGAGTAACATTCATACAAGGTGTGCTGCGAATAAACGCAACAAGATCCAGCTCTTAAAAAGTCCATTGTTTTGGTGACTTGTTGGTTCACTTATTCAGAGATCAAGAAAAGCTATTTTCCACCCGTTCACTGTTTGAGAATAAGACTGGTTTGTTATTCAACTTAATTTTCTGTTGTCAGTTTCAGAAAATTGGTTTTATATCTTTTTTATATAGTAGTGGTTGTGTAGAATGAAACATGTCTTGAACATAGTTTGACTAGGCCATGCTTGTAATAAGGAAACCCTGAAGAGATGTTTTAGTCCAGGTAAACATCTGTATTGTCTCATAAATGTCTTGTTaaaataaatccattccaataaggcatgacataaggta
>XM_036941634.1
ctcttcataacattctggagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggccacgactgtagtatGTCATGAATATTAATTTCCTCcacaggtgtcagggaaaatgtatggagtaaaacgtACATATTTTGATTTCGATTGTAGTGACGTAAAAGTTAGTCAAATAATTGTGTTTTGTTGTTTAACCTAATTTATTCCTAACCTATGATTCTGTCACATACTGACACCCATAATTGCACCTGAAATAAGTTCAGGTCTTGATTCTCTGTATGTTATTTTGTCATTTTATTTTGGTTTATTAGGCCTACCTCATTTGTTCAGAACCTAAGCGTAAAGTCGGCCTACTCCGTGTTCCTATTGGTGGAGAGGTTCTAGAGCAGACACCACTGTGGTaaagacatactgtatatttccTGTTATTTGAAGGCTCAGTTTAGTTGTGATGTGAAGGTCTTGTATTAGCAGGATGTCTGCATTCTGTCTGTGTTGTgcaatcttcctctgtctcctttgCAGCACCTTGGCTGAGAAAGGCAGCAAGGGACTGCTGGTCCGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGGGTGTGTACATGCGCCTAACAAAAGAGATTGCAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAATCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGACTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGTTGGAAATGGAGGATGAAGATACGATCAATGTTTTCCAGCAACAGACAGGAGGCCTCTACTAGCATGTGAAGTACTCCCCCACATCTTCCTCCACCCCCCAGACGGCTGCTTTGCAGCTTGTCCCATTTTCCACCACAGAACCAATACCATGCGGAAGACGTCCTGCTCACAGTTCTACATAACTGTTGATGTCTAGTGTTTTCATTCTTGCCTTTGTTTCCTTCCTGTTTTGTACATAAACAACCTCCGCTAAAACAACTCAGATTTGAGTAACATTCATACAAGGTGTGCTGCGAATAAACGCAACAAGATCCAGCTCTTAAAAAGTCCATTGTTTTGGTGACTTGTTGGTTCACTTATTCAGAGATCAAGAAAAGCTATTTTCCACCCGTTCACTGTTTGAGAATAAGACTGGTTTGTTATTCAACTTAATTTTCTGTTGTCAGTTTCAGAAAATTGGTTTTATATCTTTTTTATATAGTAGTGGTTGTGTAGAATGAAACATGTCTTGAACATAGTTTGACTAGGCCATGCTTGTAATAAGGAAACCCTGAAGAGATGTTTTAGTCCAGGTAAACATCTGTATTGTCTCATAAATGTCTTGTTaaaataaatccattccaataaggcatgacataaggta
>XM_036941632.1
ctcttcataacattctggagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggccacgactgtagtatGTCATGAATATTAATTTCCTCcacaggtgtcagggaaaatgtatggagtaaaacgtACATATTTTGATTTCGATTGTAGTGACGTAAAAGTTAGTCAAATAATTGTGTTTTGTTGTTTAACCTAATTTATTCCTAACCTATGATTCTGTCACATACTGACACCCATAATTGCACCTGAAATAAGTTCAGGTCTTGATTCTCTGTATGTTATTTTGTCATTTTATTTTGGTTTATTAGGCCTACCTCATTTGTTCAGAACCTAAGCGTAAAGTCGGCCTACTCCGTGTTCCTATTGGTGGAGAGGTTCTAGAGCAGACACCACTGTGGTaaagacatactgtatatttccTGTTATTTGAAGGCTCAGTTTAGTTGTGATGTGAAGGTCTTGTATTAGCAGGATGTCTGCATTCTGTCTGTGTTGTgcaatcttcctctgtctcctttgCAGCACCTTGGCTGAGAAAGGCAGCAAGGGACTGCTGGTCCGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGGGTGTGTACATGCGCCTAACAAAAGAGATTGCAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAATCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGACTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGGCGGGACGGCCAAGGGTACTCTGTGCGGAGAACCATCCGCCCCCCTTAGACGGTGCCAGCAGCCGCTCCTCTTCCCCAAAAACAATGAGACAGACGAGGTCATCACCTCCATCAACGTTCCTTTAGGGGTTGAGGAGTGCCAGCAGGCAAACAATGGTAAGTATCTCTGATTCCATTTTGAATGGCAGTATTTTAATATATGGtatttatgtacagtaccagtcaaaagtttggacacacctattcattcaagggtttttctttatttgtactatt
>XM_021558751.2
tcttcataacattctggagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggccacgactgtagtatGTCATGAATATTAATTTCCTCcacaggtgtcagggaaaatgtatggagtaaaacgtACATATTTTGATTTCGATTGTAGTGACGTAAAAGTTAGTCAAATAATTGTGTTTTGTTGTTTAACCTAATTTATTCCTAACCTATGATTCTGTCACATACTGACACCCATAATTGCACCTGAAATAAGTTCAGGTCTTGATTCTCTGTATGTTATTTTGTCATTTTATTTTGGTTTATTAGGCCTACCTCATTTGTTCAGAACCTAAGCGTAAAGTCGGCCTACTCCGTGTTCCTATTGGTGGAGAGGTTCTAGAGCAGACACCACTGTGGTaaagacatactgtatatttccTGTTATTTGAAGGCTCAGTTTAGTTGTGATGTGAAGGTCTTGTATTAGCAGGATGTCTGCATTCTGTCTGTGTTGTgcaatcttcctctgtctcctttgCAGCACCTTGGCTGAGAAAGCAAGGGACTGCTGGTCCGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGGGTGTGTACATGCGCCTAACAAAAGAGATTGCAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAATCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGACTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGGCGGGACGGCCAAGGGTACTCTGTGCGGAGAACCATCCGCCCCCCTTAGACGGTGCCAGCAGCCGCTCCTCTTCCCCAAAAACAATGAGACAGACGAGGTCATCACCTCCATCAACGTTCCTTTAGGGGTTGAGGAGTGCCAGCAGGCAAACAATGGTAAGTATCTCTGATTCCATTTTGAATGGCAGTATTTTAATATATGGtatttatgtacagtaccagtcaaaagtttggacacacctattcattcaagggtttttctttatttgtactatt

Function

NR:

description
uncharacterized protein LOC110486896 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941633.1 False 1771 mRNA 0.41 5 57225575 57236988
XM_036941634.1 False 1692 mRNA 0.41 4 57225575 57236988
XM_036941632.1 False 1324 mRNA 0.43 5 57225575 57243852
XM_021558751.2 True 1319 mRNA 0.43 5 57225576 57243852

Neighbor

gene id symbol gene type direction distance location
LOC110486895 NA coding upstream 212 57209985 ~ 57225363 (+)
LOC110486888 hn1 coding upstream 15676 57196436 ~ 57209899 (+)
LOC110486893 sumo2 coding upstream 29797 57190102 ~ 57195778 (+)
LOC110486867 LOC106601804 coding upstream 50817 57164102 ~ 57174758 (+)
LOC110486882 LOC106601806 coding upstream 63683 57156086 ~ 57161892 (+)
LOC110486898 NA coding downstream 7051 57250903 ~ 57261741 (+)
LOC118936426 LOC106601799 coding downstream 23354 57267206 ~ 57272110 (+)
LOC110486905 LOC106606635 coding downstream 32264 57276116 ~ 57291837 (+)
LOC110516540 LOC106606577 coding downstream 59593 57303445 ~ 57459461 (+)
LOC110514101 LOC106606600 coding downstream 278904 57522756 ~ 57640558 (+)
G1189901 NA non-coding upstream 16648 57205873 ~ 57208927 (+)
LOC110486874 LOC106601805 non-coding upstream 69595 57149314 ~ 57155987 (+)
G1189840 NA non-coding upstream 117493 57107629 ~ 57108082 (+)
G1189833 NA non-coding upstream 145995 57075868 ~ 57079580 (+)
G1189832 NA non-coding upstream 150714 57074585 ~ 57074861 (+)
G1189866 NA non-coding downstream 33120 57276972 ~ 57278622 (+)
G1189949 NA non-coding downstream 87907 57331759 ~ 57367492 (+)
G1189978 NA non-coding downstream 171384 57415236 ~ 57416242 (+)
G1190014 NA non-coding downstream 267799 57511651 ~ 57516717 (+)
G1189819 NA other upstream 169958 57054453 ~ 57055617 (+)
G1189675 srebf1 other upstream 299968 56877928 ~ 56925607 (+)
G1189738 NA other upstream 388579 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1286218 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1859259 55340702 ~ 55394765 (+)
LOC110486909 LOC106601794 other downstream 379821 57613961 ~ 57625405 (+)
G1190568 NA other downstream 721664 57950494 ~ 57994502 (+)
G1190689 NA other downstream 797034 58040886 ~ 58041295 (+)
LOC110538555 NA other downstream 1292975 58521363 ~ 58557066 (+)

Expression


Co-expression Network