LOC110486905 (LOC106606635)


Basic Information

Item Value
gene id LOC110486905
gene name LOC106606635
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57276116 ~ 57291837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941636.1
CAGGATGCTCTACTCTGATGGGACCACCTCAACACCATCAAGCCAGCTCCGTTGACAGTTCCCTGCCCAACACTCCACCTTCGTGGCACAGATGACAGAAACTTGCCCCTGGAACTCTACCCTACTTTGGGAGCAAGGGACTGCTGGTACGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGAGTGTGTACATGCGCCTAACAAAAGAGATTCTAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAACCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGTCTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGTTAAAGGCATGGCGTGCAACGATTAGACCAACACAGAGCAAGAGTAGCGATGTCTATGAAGACATGCGCACCACCATTAGACGTGCACACCCCCCCCAGATGGGTTATTAGTGATGTTGCACGGCAGCCATCTTTACTTTGGGCACCAACCTAAGACAGGTTGCTACGGGTGTTGCACAGCAGCCATCTTTACTTTGGGCACGACCTTCGGACAGCTTGTTACTGATGATGTACGGCAGCCATCTTTAATTTGGGTCCAAATGGAAGCTCATGTCAGCTGACTAAGAGACAATTATGTAAACATACTGTAATACATGATGTCAACGAAGGACTTTGAAAGATATATTCTCAGGTTGTGTTAAGTAGCAAGGGTTTGCATCAATGATGTACTCTTATGTCAGTCATTCAACCTCAAGGTAAGCtacctatatactgtagctacttaagtacacagcattgtatgtgACTGACATCACACATTGTAAATGGTTGTTCATACAGAGGTTCGTTATAGTCCTTGACCCTGACGTAGCAGGGAGAATTTGAGTCTTGTAATTACAACCACAATTTAACTTGAAAATAGCACTGATTGCTGTGCATGGAATTTCATTGTCTTTAGCTGTACATTCTATTTTTCTTTATAGAttgacaatatatattttttaacaactTTTAAATGTTGAATTGATTCTCTAttgtatatatatgtttttacatATTTGATGGCATTGGGCCTATGCCTATTTTTCAGGCGCCAGGCAACTTTTACTGCTATTTTATTGTAATACTTTTGCATTCTTTAGTTCCTGTACTGATCATGTTGTTCCTGTAATGATAGTCTATTTTTTATAATAAATGAGTCATAAGACTTCCA
>XM_036941635.1
agaggatatgttatgtagtgaaccattcacctctatcatgtctgagagtagaggatatgttatgtatgtatgtagtgaaccattctgGGAGTAGGGAGTCTAGTGTTACGCACATCACCTGAACCCAGGTTGCACATAGAAAGCATCAGTAGAGTTAGAAGTCATTGTTGTCACACACTCTGGTTTGTTATATTTACCTGCCTATAGTCTCCCTAATAACAGGTCACAACAGTGTGGACTAACTTTGAAAAGTTGATGGCGTGTTTCCATTTGAAGTGGTTGTTGTAGCGTACCATTCCAGTTGTACTTGAAGTGACTGTCTTTGAATGACAAACCCACAAATTAATGCTCTGAAAATAATTGTGTTTTGTTGTTTAACCTCATTTATCCCTAACCTATGACTCTATCACACACAATTAGGCCTACTTCGTGTTCCTATTGGTGGAGAGGTTCTAGAGCAGACACCACTGTGGTaaagacatactgtatatttccTGTTATTTGAAGGCTCAGTTTAGTTGTGATGTGAAGGTCTTGTATTAGCAGGATGTCTGCACTCTGTCTCTGTTGTGCAATCTTCCTCTGCCTTCTTTGCTGCACCTTGGCTGAGAAAGGGAGCAAGGGACTGCTGGTACGAAAGCAGGAGGGAGACACTATGACCATCCACTGCAGCACCTCTCTGCCAGACCAAGAAAACCTGAGTGTGTACATGCGCCTAACAAAAGAGATTCTAGTCCTCTACTTTCACCAGGAAACAAAAAAATTAACCCTCCACGAGAGGTTCAAACTCAGATTGACGACTAACGGAAGTCTCAACAAAATGGACATCACCATCACAAACCTGACCATAGAAGACTCTGGGGCCTTctggtgtgtgtacagtgtttATAAGAAAAACAAGATTGAGAAGACTGAGGGGGAAGGAGCTGTTTTGCTGGTGGTGAATGATGAGGAGTGTGACCAGAATGATGCATCCTCAGGGCTAGGAATGTCCTGGTATCTGGTCCTGGTCTCAGCTGTCACTGCTGGCTCTGTGCTTCTCCTGAGTCTGCTCATCCTCTTCATCTGGGTCATCCCCAGGTTAAAGGCATGGCGTGCAACGATTAGACCAACACAGAGCAAGAGTAGCGATGTCTATGAAGACATGCGCACCACCATTAGACGTGCACACCCCCCCCAGATGGGTTATTAGTGATGTTGCACGGCAGCCATCTTTACTTTGGGCACCAACCTAAGACAGGTTGCTACGGGTGTTGCACAGCAGCCATCTTTACTTTGGGCACGACCTTCGGACAGCTTGTTACTGATGATGTACGGCAGCCATCTTTAATTTGGGTCCAAATGGAAGCTCATGTCAGCTGACTAAGAGACAATTATGTAAACATACTGTAATACATGATGTCAACGAAGGACTTTGAAAGATATATTCTCAGGTTGTGTTAAGTAGCAAGGGTTTGCATCAATGATGTACTCTTATGTCAGTCATTCAACCTCAAGGTAAGCtacctatatactgtagctacttaagtacacagcattgtatgtgACTGACATCACACATTGTAAATGGTTGTTCATACAGAGGTTCGTTATAGTCCTTGACCCTGACGTAGCAGGGAGAATTTGAGTCTTGTAATTACAACCACAATTTAACTTGAAAATAGCACTGATTGCTGTGCATGGAATTTCATTGTCTTTAGCTGTACATTCTATTTTTCTTTATAGAttgacaatatatattttttaacaactTTTAAATGTTGAATTGATTCTCTAttgtatatatatgtttttacatATTTGATGGCATTGGGCCTATGCCTATTTTTCAGGCGCCAGGCAACTTTTACTGCTATTTTATTGTAATACTTTTGCATTCTTTAGTTCCTGTACTGATCATGTTGTTCCTGTAATGATAGTCTATTTTTTATAATAAATGAGTCATAAGACTTCCA

Function

NR:

description
uncharacterized protein LOC110486897 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941636.1 False 1470 mRNA 0.43 4 57276116 57291837
XM_036941635.1 True 1955 mRNA 0.42 4 57286813 57291837

Neighbor

gene id symbol gene type direction distance location
LOC118936426 LOC106601799 coding upstream 4006 57267206 ~ 57272110 (+)
LOC110486898 NA coding upstream 14375 57250903 ~ 57261741 (+)
LOC118936313 LOC106606633 coding upstream 32264 57225575 ~ 57243852 (+)
LOC110486895 NA coding upstream 50753 57209985 ~ 57225363 (+)
LOC110486888 hn1 coding upstream 66217 57196436 ~ 57209899 (+)
LOC110516540 LOC106606577 coding downstream 11608 57303445 ~ 57459461 (+)
LOC110514101 LOC106606600 coding downstream 230919 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 coding downstream 322124 57613961 ~ 57625405 (+)
c13h17orf75 LOC106601793 coding downstream 346594 57638431 ~ 57655166 (+)
LOC110486914 LOC106606529 coding downstream 436352 57728189 ~ 57739064 (+)
G1189904 NA non-coding upstream 20944 57217534 ~ 57255172 (+)
G1189901 NA non-coding upstream 67189 57205873 ~ 57208927 (+)
LOC110486874 LOC106601805 non-coding upstream 120136 57149314 ~ 57155987 (+)
G1189840 NA non-coding upstream 168034 57107629 ~ 57108082 (+)
G1189833 NA non-coding upstream 196536 57075868 ~ 57079580 (+)
G1189949 NA non-coding downstream 39922 57331759 ~ 57367492 (+)
G1189978 NA non-coding downstream 123399 57415236 ~ 57416242 (+)
G1190014 NA non-coding downstream 219814 57511651 ~ 57516717 (+)
G1189819 NA other upstream 220499 57054453 ~ 57055617 (+)
G1189675 srebf1 other upstream 350509 56877928 ~ 56925607 (+)
G1189738 NA other upstream 439120 56836416 ~ 56836996 (+)
G1189040 NA other upstream 1336759 55938472 ~ 55939357 (+)
LOC110539040 LOC106601832 other upstream 1909800 55340702 ~ 55394765 (+)
G1190568 NA other downstream 673679 57950494 ~ 57994502 (+)
G1190689 NA other downstream 749049 58040886 ~ 58041295 (+)
LOC110538555 NA other downstream 1244990 58521363 ~ 58557066 (+)

Expression


Co-expression Network