LOC110486915 (LOC106606556)


Basic Information

Item Value
gene id LOC110486915
gene name LOC106606556
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57698059 ~ 57706813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558779.2
AAAATCACAAGCATTTTACGTTCGTCGTGGTCCTATGTACTGTAACACGTTCCAGCTTTCGTCCAAACTCACAGAAACGTCAACATTTGTATTTCGTTACGTAAATGGCTAATTACAACACTCATATTTAACCAGAATATTTCCTACATTCGATACAGATTTATATTCGCAAAATAATGGCAAACAAGGACAGAAACAAAACGATTTTGCTGGAATTGGGGAAACTGCCAGAAAACAACCAATGCGCAGACTGTAGCGCGCCGGATCCTGACTGGGCGTCCTATAAGCTGGGTGTATTTGTGTGTCTGAACTGCTCTGGAGTGCACCGCAACCTGTCCAACATCAGCCGCGTTAAATCCATACGGCTCGACTTCTGGGATGACGagctagtgaagTTCATGAAAACCAATGGAAATGCCACAGGCAGAGCCATCTATGAGAAAGCAGTCCCAGCATTCTACTACCGGCCCCAGCAAGAAGACTGTGCCGTCTTAAGGGAGCAGTGGATAAGAGCAAAATATGAGAGGATGGAATTTACCGGCGAGACAAAGTATCCCCCACTGGCCTACACGACAGGTTTCTATGAAGGGATGCTGTGGAAGAAGGGGAAGGAGAAGGGACAGTTTCAGAGAAGGAAGTTTGTTCTGTCTGAGAAGGAATTCACCCTGGTTTACTACAACAAGGAGGATCCGTCCAAAGGGCCCAAAGCGCTCATCTCCATCAAAGACGTGAATGTGACCTTTCAACCTGAGAAAATTGGTCACGCCCATGGTCTGCAGATTACCTACCAGAAAGACAGCCACACCAGAAGTATTTTTGTCTACCACGAAAGTGGAGAGGAGATTGTCAACTGGTTCAATGCCATTCGAGCTGCTCGCTTTGCCTACCTGAAAACAGCATACCCCACAGGAAGTGATAAAGAATTGAGGACTAGAATTACCAGAAACTACCTCAAAGAAGGATACATGGAGAAGACAGGTCCTATGCAAAAGGAGACGTTCAAAAAGAGATGGTTCATCTTGGACTCCCAAGACAGGAAGCTCCTTTACTTCAAAAGCCAGCTGGATGCTGAGGAGCTGGGAGTTGTGTTCATCGGCACAGAGACCAATGGTTACTCAGTGAGTGAGTGCATTCCCAAAAGGACCAGAGGCAACCGGTGGAGGTGTGGAGTCACAGTGGACACGCCGGACCGCCAGTTTGTCTTCATGTGTGAgcaggagagggagcagagagagtggGTGGAGGCCCTCAGAGAGGTCATCTCTAAACCCATGCAGCCCCAGGACTACACCACTGAAGCCAACATCCGAGGGAAGAGTTGACtttagagagagagctgagggaaGAGTTGACTTTTGAGAGAGAGCTGACTTTCGAGAGAGGGATTCCACCAACATTGGCTGCAAAACCCACTCTGAAGActcatctacactgaacaaatatataaacacaacatgcaacaatttcaaagattttactgagttacagtttaaataaggaaatcagtctgttgaaataaattaattcagaactaatctatggatttcacaactggGAATGCAAatatgcatctattggtcacagatacagaaaaccagttagtatctggtgtgaccaccatatgccacatgcagcgtgacacatcctCTTCgcaagttgatcaggctgttgattgtggcatgtggaatgttgtcccactgctGTTCAATAGTTACTGGAtactggcgggaactggaacacgctgtcgatccagagcaatcccaaacatgctcaattagTGACATGGTtggtgagtatgcaagccatggaagaactgatTTTTTTggattccaggaattgtgtacagatccttgcgacatgaggCCGTCCATAATCAGGCTGAAACTTAAGGTGATGGCGgctgatgaatggcacgacaatggtcaCGACAGGATCTCGTCACGGAGTCTCTATGGagtcaaattgccatcaataaaatgcaattgtgttcattttcCGTAGCTTTATGCCTTCCCAaatcataaccccaccgccatgatggggcactctattcacaacgttgagcttccctgagaccgtTTCTGGCAAGTTTGTGCCGAAATTCTTCAGttttgcaaacccacagtttcatcagctatctgggtggatggtctcagatgatcccccagatgaagaagccggatgtggtggTCCTAAAATTttagagaaatacattttttggtgcatctggaacatttctgggatcttttatttcagctcatgcaacatgggaccaacactttacatgttgtgtttctatttttgttcagtatataagaAAACTTCCAGTATCACTGCATTGAATGTATCCCCCTTAGTGACAGCAGGCCTCTAAATATATTACTTCTTGGAGGACAATGTCTAGGACTGTGGGTTGTTTATTTACAATGCAGATACATGGTTCTACTGGAATTATTGAAAAATGAATTGGGGCAGTACTGTCTCACCACAAATGATGGACAAACTAGATGCCTTGCTCGGCATGGAAGGTAAAATTGTTATTCTCAAACCTTACCTATTAAAATggcagagttgtgtgtgtgaaacCAGGTCAATTCTGTTGCTATGAGAAAGGAAGTGAGTGTGCGTACATGTTATAAAATTAATATCAACTGGAATAATATCTAATACCAACTGTGATTACTAATAAAAACTGTGATAATATAACAACTAA
>XM_021558780.2
AAAATCACAAGCATTTTACGTTCGTCGTGGTCCTATGTACTGTAACACGTTCCAGCTTTCGTCCAAACTCACAGAAACGTCAACATTTGTATTTCGTTACGTAAATGGCTAATTACAACACTCATATTTAACCAGAATATTTCCTACATTCGATACAGATTTATATTCGCAAAATAATGGCAAACAAGGACAGAAACAAAACGATTTTGCTGGAATTGGGGAAACTGCCAGAAAACAACCAATGCGCAGACTGTAGCGCGCCGGATCCTGACTGGGCGTCCTATAAGCTGGGTGTATTTGTGTGTCTGAACTGCTCTGGAGTGCACCGCAACCTGTCCAACATCAGCCGCGTTAAATCCATACGGCTCGACTTCTGGGATGACGagctagtgaagTTCATGAAAACCAATGGAAATGCCACAGGCAGAGCCATCTATGAGAAAGCAGTCCCAGCATTCTACTACCGGCCCCAGCAAGAAGACTGTGCCGTCTTAAGGGAGCAGTGGATAAGAGCAAAATATGAGAGGATGGAATTTACCGGCGAGACAAAGTATCCCCCACTGGCCTACACGACAGGTTTCTATGAAGGGATGCTGTGGAAGAAGGGGAAGGAGAAGGGACAGTTTCAGAGAAGGAAGTTTGTTCTGTCTGAGAAGGAATTCACCCTGGTTTACTACAACAAGGAGGATCCGTCCAAAGGGCCCAAAGCGCTCATCTCCATCAAAGACGTGAATGTGACCTTTCAACCTGAGAAAATTGGTCACGCCCATGGTCTGCAGATTACCTACCAGAAAGACAGCCACACCAGAAGTATTTTTGTCTACCACGAAAGTGGAGAGGAGATTGTCAACTGGTTCAATGCCATTCGAGCTGCTCGCTTTGCCTACCTGAAAACAGCATACCCCACAGGAAGTGATAAAGAATTGAGGACTAGAATTACCAGAAACTACCTCAAAGAAGGATACATGGAGAAGACAGGTCCTATGCAAAAGGAGACGTTCAAAAAGAGATGGTTCATCTTGGACTCCCAAGACAGGAAGCTCCTTTACTTCAAAAGCCAGCTGGATGCTGAGGAGCTGGGAGTTGTGTTCATCGGCACAGAGACCAATGGTTACTCAGTGAGTGAGTGCATTCCCAAAAGGACCAGAGGCAACCGGTGGAGGTGTGGAGTCACAGTGGACACGCCGGACCGCCAGTTTGTCTTCATGTGTGAgcaggagagggagcagagagagtggGTGGAGGCCCTCAGAGAGGTCATCTCTAAACCCATGCAGCCCCAGGACTACACCACTGAAGCCAACATCCGAGggaaGAGTTGACTTTTGAGAGAGAGCTGACTTTCGAGAGAGGGATTCCACCAACATTGGCTGCAAAACCCACTCTGAAGActcatctacactgaacaaatatataaacacaacatgcaacaatttcaaagattttactgagttacagtttaaataaggaaatcagtctgttgaaataaattaattcagaactaatctatggatttcacaactggGAATGCAAatatgcatctattggtcacagatacagaaaaccagttagtatctggtgtgaccaccatatgccacatgcagcgtgacacatcctCTTCgcaagttgatcaggctgttgattgtggcatgtggaatgttgtcccactgctGTTCAATAGTTACTGGAtactggcgggaactggaacacgctgtcgatccagagcaatcccaaacatgctcaattagTGACATGGTtggtgagtatgcaagccatggaagaactgatTTTTTTggattccaggaattgtgtacagatccttgcgacatgaggCCGTCCATAATCAGGCTGAAACTTAAGGTGATGGCGgctgatgaatggcacgacaatggtcaCGACAGGATCTCGTCACGGAGTCTCTATGGagtcaaattgccatcaataaaatgcaattgtgttcattttcCGTAGCTTTATGCCTTCCCAaatcataaccccaccgccatgatggggcactctattcacaacgttgagcttccctgagaccgtTTCTGGCAAGTTTGTGCCGAAATTCTTCAGttttgcaaacccacagtttcatcagctatctgggtggatggtctcagatgatcccccagatgaagaagccggatgtggtggTCCTAAAATTttagagaaatacattttttggtgcatctggaacatttctgggatcttttatttcagctcatgcaacatgggaccaacactttacatgttgtgtttctatttttgttcagtatataagaAAACTTCCAGTATCACTGCATTGAATGTATCCCCCTTAGTGACAGCAGGCCTCTAAATATATTACTTCTTGGAGGACAATGTCTAGGACTGTGGGTTGTTTATTTACAATGCAGATACATGGTTCTACTGGAATTATTGAAAAATGAATTGGGGCAGTACTGTCTCACCACAAATGATGGACAAACTAGATGCCTTGCTCGGCATGGAAGGTAAAATTGTTATTCTCAAACCTTACCTATTAAAATggcagagttgtgtgtgtgaaacCAGGTCAATTCTGTTGCTATGAGAAAGGAAGTGAGTGTGCGTACATGTTATAAAATTAATATCAACTGGAATAATATCTAATACCAACTGTGATTACTAATAAAAACTGTGATAATATAACAACTAA
>XM_036941668.1
AAAATCACAAGCATTTTACGTTCGTCGTGGTCCTATGTACTGTAACACGTTCCAGCTTTCGTCCAAACTCACAGAAACGTCAACATTTGTATTTCGTTACGTAAATGGCTAATTACAACACTCATATTTAACCAGAATATTTCCTACATTCGATACAGATTTATATTCGCAAAATAATGGCAAACAAGGACAGAAACAAAACGATTTTGCTGGAATTGGGGAAACTGCCAGAAAACAACCAATGCGCAGACTGTAGCGCGCCGGATCCTGACTGGGCGTCCTATAAGCTGGGTGTATTTGTGTGTCTGAACTGCTCTGGAGTGCACCGCAACCTGTCCAACATCAGCCGCGTTAAATCCATACGGCTCGACTTCTGGGATGACGagctagtgaagTTCATGAAAACCAATGGAAATGCCACAGGCAGAGCCATCTATGAGAAAGCAGTCCCAGCATTCTACTACCGGCCCCAGCAAGAAGACTGTGCCGTCTTAAGGGAGCAGTGGATAAGAGCAAAATATGAGAGGATGGAATTTACCGGCGAGACAAAGTATCCCCCACTGGCCTACACGACAGGTTTCTATGAAGGGATGCTGTGGAAGAAGGGGAAGGAGAAGGGACAGTTTCAGAGAAGGAAGTTTGTTCTGTCTGAGAAGGAATTCACCCTGGTTTACTACAACAAGGAGGATCCGTCCAAAGGGCCCAAAGCGCTCATCTCCATCAAAGACGTGAATGTGACCTTTCAACCTGAGAAAATTGGTCACGCCCATGGTCTGCAGATTACCTACCAGAAAGACAGCCACACCAGAAGTATTTTTGTCTACCACGAAAGTGGAGAGGAGATTGTCAACTGGTTCAATGCCATTCGAGCTGCTCGCTTTGCCTACCTGAAAACAGCATACCCCACAGGAAGTGATAAAGAATTGAGGACTAGAATTACCAGAAACTACCTCAAAGAAGGATACATGGAGAAGACAGGTCCTATGCAAAAGGAGACGTTCAAAAAGAGATGGTTCATCTTGGACTCCCAAGACAGGAAGCTCCTTTACTTCAAAAGCCAGCTGGATGCTGAGGAGCTGGGAGTTGTGTTCATCGGCACAGAGACCAATGGTTACTCAGTGAGTGAGTGCATTCCCAAAAGGACCAGAGGCAACCGGTGGAGGTGTGGAGTCACAGTGGACACGCCGGACCGCCAGTTTGTCTTCATGTGTGAgcaggagagggagcagagagagtggGTGGAGGCCCTCAGAGAGGTCATCTCTAAACCCATGCAGCCCCAGGACTACACCAGTAAGAGCCATGTCACCAGTATTCACACCACAGGAGACtcctgaggggaggacggctcataataatgggcaGAACGGAGtggatggaatggcatcaaacacatggaaaccacgtgtttgatgtatttgataccatgccactgattccgctccagcctattccacgagcccgtcctcccaaatgaaggtgccaccaaccccctgacacacacacatacacactatgcACGTACTGTACATAGTATATATTCATACACCATATGGTGAATAACCTAATATACGCTTTTCTGACTTGTCTT
>TU1357844
ttgtgtacagatccttgcgacatgaggCCGTCCATAATCAGGCTGAAACTTAAGGTGATGGCGgctgatgaatggcacgacaatggtcaCGACAGGATCTCGTCACGGAGTCTCTATGGagtcaaattgccatcaataaaatgcaattgtgttcattttcCGTAGCTTTATGCCTTCCCAaatcataaccccaccgccatgatggggcactctattcacaacgttgagcttccctgagaccgtTTCTGGCAAGTTTGTGCCGAAATTCTTCAGttttgcaaacccacagtttcatcagctatctgggtggatggtctcagatgatcccccagatgaagaagccggatgtggtggTCCTAAAATTttagagaaatacattttttggtgcatctggaacatttctgggatcttttatttcagctcatgcaacatgggaccaacactttacatgttgtgtttctatttttgttcagtatataagaAAACTTCCAGTATCACTGCATTGAATGTATCCCCCTTAGTGACAGCAGGCCTCTAAATATATTACTTCTTGGAGGACAATGTCTAGGACTGTGGGTTGTTTATTTACAATGCAGATACATGGTTCTACTGGAATTATTGAAAAATGAATTGGGGCAGTACTGTCTCACCACAAATGATGGACAAACTAGATGCCTTGCTCGGCATGGAAGGTAAAATTGTTATTCTCAAACCTTACCTATTAAAATggcagagttgtgtgtgtgaaacCAGGTCAATTCTGTTGCTATGAGAAAGGAAGTGAGTGTGCGTACATGTTATAAAATTAATATCAACTGGAATAATATCTAATACCAACTGTGATTACTAATAAAAACTGTG
>TU1357845
TTACAAATAGTTAAGCCACATTGTTGAATTTTCACTGGGCTTGCATTGTACACATCATCACTCTGCGCCCTCAGCCGTCCAAAGGGCCCAAAGCGCTCATCTCCATCAAAGACGTGAATGTGACCTTTCAACCTGAGAAAATTGGTCACGCCCATGGTCTGCAGATTACCTACCAGAAAGACAGCCACACCAGAAGTATTTTTGTCTACCACGAAAGTGGAGAGGAGATTGTCAACTGGTTCAATGCCATTCGAGCTGCTCGCTTTGCCTACCTGAAAACAGCATACCCCACAGGAAGTGATAAAGAATTGAGGACTAGAATTACCAGAAACTACCTCAAAGAAGGATACATGGAGAAGACAGGTCCTATGCAAAAGGAGACGTTCAAAAAGAGATGGTTCATCTTGGACTCCCAAGACAGGAAGCTCCTTTACTTCAAAAGCCAGCTGGATGCTGAGGAGCTGGGAGTTGTGTTCATCGGCACAGAGACCAATGGTTACTCAGTGAGTGAGTGCATTCCCAAAAGGACCAGAGGCAACCGGTGGAGGTGTGGAGTCACAGTGGACACGCCGGACCGCCAGTTTGTCTTCATGTGTGAgcaggagagggagcagagagagtggGTGGAGGCCCTCAGAGAGGTCATCTCTAAACCCATGCAGCCCCAGGACTACACCACTGAAGCCAACATCCGAGGGAAGAGTTGACtttagagagagagctgagggaaGAGTTGACTTTTGAGAGAGAGCTGACTTTCGAGAGAGGGATTCCACCAACATTGGCTGCAAAACCCACTCTGAAGActcatctacactgaacaaatatataaacacaacatgcaacaatttcaaagattttactgagttacagtttaaataaggaaatcagtctgttgaaataaat
>TU1357843
GTCGTGGTCCTATGTACTGTAACACGTTCCAGCTTTCGTCCAAACTCACAGAAACGTCAACATTTGTATTTCGTTACGTAAATGGCTAATTACAACACTCATATTTAACCAGAATATTTCCTACATTCGATACAGATTTATATTCGCAAAATAATGGCAAACAAGGACAGAAACAAAACGATTTTGCTGGAATTGGGGAAACTGCCAGAAAACAACCAATGCGCAGACTGTAGCGCGCCGGATCCTGACTGGGCGTCCTATAAGCTGGGTGTATTTGTGTGTCTGAACTGCTCTGGAGTGCACCGCAACCTGTCCAACATCAGCCGCGTTAAATCCATACGGCTCGACTTCTGGGATGACGagctagtgaagTTCATGAAAACCAATGGAAATGCCACAGGCAGAGCCATCTATGAGAAAGCAGTCCCAGCATTCTACTACCGGCCCCAGCAAGAAGACTGTGCCGTCTTAAGGGAGCAGTGGATAAGAGCAAAATATGAGAGGATGGAATTTACCGGCGAGACAAAGTATCCCCCACTGGCCTACACGACAGGTTTCTATGAAGGGATGCTGTGGAAGAAGGGGAAGGAGAAGGGACAGTTTCAGAGAAGGAAGTTTGTTCTGTCTGAGAAGGAATTCA

Function

NR:

description
arf-GAP with dual PH domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558779.2 False 2713 mRNA 0.44 11 57698059 57706813
XM_021558780.2 False 2683 mRNA 0.44 12 57698059 57706813
XM_036941668.1 False 1591 mRNA 0.48 10 57699486 57706813
TU1357844 False 861 lncRNA 0.41 1 57698075 57698935
TU1357845 False 906 TUCP 0.47 6 57699251 57701824
TU1357843 True 640 TUCP 0.46 5 57702536 57706790

Neighbor

gene id symbol gene type direction distance location
LOC110486912 LOC106601792 coding downstream 238 57666215 ~ 57697821 (-)
LOC118938332 LOC106606586 coding downstream 33663 57659907 ~ 57664396 (-)
LOC118936526 LOC106606576 coding downstream 85396 57598591 ~ 57612663 (-)
LOC110516439 LOC106601803 coding downstream 508740 57174996 ~ 57189319 (-)
LOC110486881 LOC106606582 coding downstream 534040 57161975 ~ 57164019 (-)
LOC110486913 LOC106606569 coding upstream 479 57707189 ~ 57727687 (-)
rfx1a rfx1 coding upstream 38177 57744990 ~ 57768073 (-)
LOC110486935 LOC106606473 coding upstream 138973 57845786 ~ 57848186 (-)
LOC110486920 LOC106606537 coding upstream 190353 57897166 ~ 57955613 (-)
LOC118938684 NA coding upstream 260736 57967549 ~ 57967702 (-)
G1190419 NA non-coding downstream 159233 57538367 ~ 57538826 (-)
G1190386 NA non-coding downstream 238608 57456707 ~ 57459451 (-)
G1190303 NA non-coding downstream 412967 57264985 ~ 57285092 (-)
G1190481 NA non-coding upstream 30532 57737345 ~ 57739055 (-)
G1190580 NA non-coding upstream 94432 57801245 ~ 57801960 (-)
G1190578 NA non-coding upstream 99167 57805980 ~ 57806220 (-)
G1190583 NA non-coding upstream 100155 57806968 ~ 57807576 (-)
G1190405 NA other downstream 198904 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 608144 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 612588 57054453 ~ 57085521 (-)
G1189660 LOC106601786 other downstream 1023821 56670293 ~ 56674238 (-)
LOC110485237 LOC106606659 other downstream 1587075 56088292 ~ 56110984 (-)
G1190628 NA other upstream 259324 57964952 ~ 57994099 (-)
LOC110514412 NA other upstream 880512 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 889963 58588778 ~ 58603975 (-)
G1191298 LOC106606554 other upstream 1052910 58759723 ~ 58762086 (-)
G1191335 NA other upstream 1161250 58868063 ~ 58868971 (-)
G1190307 NA non-coding downstream 416931 57280314 ~ 57281144 (-)
LOC110486915 LOC106606556 other upstream 316 57698059 ~ 57706813 (-)

Expression


Co-expression Network