LOC110486947 (LOC106601860)


Basic Information

Item Value
gene id LOC110486947
gene name LOC106601860
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58428372 ~ 58446189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941712.1
ATGAAGGTGCTGGGGAAAGAAATGGAACTGGGCCTAAATTATGTTGCTAGGAGGCGCTGTTGCGACCGGAAGAGGTCGATGTGATGAGGACCATTTGACACAAACCTGAAACAGAAAAGAGAAATTCACGATTCTGAAATTCTATAAGCAACAGAAACCATAAGACATACGACGCCAGGAGATATTCATTTGTCTTCAACTTTGTATTTAGGGGAAGAAAAGAGAAACACGGAGTCATTGGTTGTGGATGTCACGCTAGAAAATCAGGCCGTTTTGAGAGGCTGGAGCCCAAACAAGGACATGGAGAGTTACGAGGACTTCTGTCTGCGGAGCCTGGCCAGACTGCAGACGGAGAGCCAGGGGAAGAGCCAAGGCCAACAGACAGGTTGTGAGCCAACTGGTCCTGTGGAAGCTCTCTCCTTCATCCACTTCCATGGAAGGGCTGTGCTCTCCCCCTTGCTGAGTGTGGAGCAGCGCAGCGAGATGTCCCAGTACAGACAGAGGGCTGCCCAGCTGGAGGTGGACAGACATGCACTACGCAGCAGCAGCCTGCTGGCCAGGGTTCAGGACATCCTGGACAGTGCTCAGGTGGACAAAGTACCAGAGATGGAGGGTAAAATGGATCTACCAACTCCGCCATATTGCCTTTCCCCAAAACCTGAGACAGTGAATGGCTACACCCTGGTGACAGACTCCCCTGGGCTACCCaggggtggtggtgtggttgAGCTACACATTACGGATCGGCCCACCACCCCTCCACCTGAGTCTCCCATAGTCCTGAATGGGtacagggcagaggagagagagaagcagatagaggaggagaggtgggaggtagaggaggagatagggtGCGGACAGGATGTGAGTTTCCAGAGCCTTCTGAGGAGGTCGAGGGAGTATGTGGAGAGAGAGCAGGCCCAGAGGGGGTCAAAGGTGATCGGCAGGGTCACTTCCACCACCCTGTCTGCGGAGAGCCTCTCTGACAAGGAGAACGAGAGCCGCAGTCCTCTGGGAGAGATGAAATCTGAACAGGGGTACAGCCTGCGCCACAGTCCGCTAAACCCACCTCAGACCCAGGCCCACATCCAGCACCAGAGTCAGTATCCTGGCCAAGCGCAAGCCCAGTACCAGGCTGTGTGTGACCCATATGACTCTCGGTTTAGCTGCCTCTCATCTGGCCTCCCCGACCCTTATGCCCTCCTGCCCAGCCCTGAACCCAGCATGAGTCCCCGCCCCCACCGCCGCCAACCACGTCCAGTGTCCACTGGTAACATCATGATCTCCTTCCCCATTGGCTCGGCAGACCTCATCCCCAGAGGGCTAGTGGGGAGGCACCAGGAGAGCACTGTTGTCATGGCGACGGGGGTGATGAGGTCACCGGAACGGGGGTCAGGCGTCAGTGACGGTAGTAGTCGTCGTGGCAGCCAGTGTGGCACCAGCCCGGTCCAGGAGAAGAGCTGCAGCCCAGTCAGTACCTCCGGAACTGGTTCACATGGGCATCATGACATCATCAGCTCCGGGTTTCGCCGGCGCTGCCACACCCTAGACAGCCAGCTCCACTCCTCCCATTCTGCCTCAGGACCTGGCATGGACCGCAGCCAGGAGAGGCTCCCGCGCTTCATGGGGGGAGTGCCTCGTTTTGCCCCGAGCCGTAGGAGCCCCGCGGTCCCCCTGAATCAGTCCTATGAGGTGGAGAACCCCTCGGCAACGCTGATAAGGCCCCACGTGAGAcccttgacccctgacctctctcCTTGCCAGATGAGGCTGGATCCTGAGGGGCCTCAGGGGCCCCATGATGGACGGATCACACCCAGCTCTTCCCTAGAGGAGCAGGACAGTAAGACAGaggagACCCAGCGACGTGTGAGTGCTCTGGAGGAGATGCAGAGGCGTCTGGAGGAGGAGCATGCCCTGCAGATGTCTCTTCTCATGgctgaacaggagagagaacaacagCGCCTCTGTCAGGAGCTGGATGAGAAGGGGAAGAGGCTGAGAGAGCAGGGGTGTGGCCGGCTCCTGAGTGGGGACGGTGGACTCAGTCCTTTCTGCCCTGGCCTTAGCCCCACCCTGAGTGCTACTGATAGGTCACCTAGACACAGTGTACACAGCATGGgtttctCCTCTCCACTGAGCTCTAGtgatccctctccctccatgcaGCCTCCTGTCTACCTCTGGGGGCCCACCTGGGGGGCCAGCAAGCCCCGGGGAAGGCTCAGTCAgGTTGTGACAGTTGAACAGCAGAGGGCGCTGTGTCGTCTGGGAGCCATCAGTTGTGGGTTCCTCACCCGCAGACTGCTCCAGACAGAGAAGGTGAAACAGCTGCGCCAGACCATTCAGGACACGCAAGAGTTCATCTGCTCGTTCCAGACTGAAGCTCCACAGAAGAGGGGATCCATCTCAGCACAGGACCTGTCTCTGCAGGAGAGAGTCAGGGCACAGTTGCGTGCGGCTCGATATGACATCCATGACATCTTCTTTGAGATGCCCCTGGAGGAGAGGCTGGCTCTGCTGCAGCTGGACAGAGAGGTCCGCACAGAGAAGAAGCTACGAGAAATGGAGAAAGCCAAGAGTCCTAATgacagagtgctgtctgctgccACACAGAGGTCACTGGACAGGAAGAAGAGGGTGGGTGAGTCTCCAGGACAAGCCAGGAAAGTACAGAAGAAGCCAAAGAGCCCTCCCActaacaggaTCCTGAAGCCAAGTCAGGGTCAGAATGCCTCTGTCCCAGGTCAGCCAAACCGACAGGGtctgtctgtcaggagctgGTACAGAAATACCCCGGAGGACAGAGTGAGGCGCTCAGACAGCCTGAAGAAGCAGAACTCCCTGGGCTAACTGattcctccctcagtccctctatGAACCCTCACTccctgacccttgacctctgAGCCGTCTATCGGCCCCATGTTCCACTATGGTTCGACCACCACCAATGCTACtagtctctctaccctccctctgacctccctctaacctccctctgacctccctctaacctccctctgAAGGTTCAGTCCAGTGCTCTCTGCCCATCGAACACCCTACCAAATGTATTGTTACTATAGTTACATAGATTTTCTACTATTACAAACTTATAAACAGTTCATGTATCCCTTAGGTGTGAATGCTGCTGTGCACTCTTGTGCCAAGATAATTCATGCATTAATGCTGCTAGATAGCCATATTTGCTGCTTAACTTGCAAAGACTTTGTAGCTAGAGGCCTTCAGTAGTGGATATGTAGTAGGGAGAAGGACTCATGAAGAAGCATTACAAAAGTAAAGGAAGTAGATTCCATTAGTTAGCGGTCTGGATTGTCTTCTGACAGGTGGCGGCATTCCTCCTCTCattttttaatgtaaaaaaaatgtcatctttatttaaccaggcaagttagaacaaatccttatttacaaggacggcctaccccggccaaacccggacgacgctggccaagttagaacaaatccttat

Function

NR:

description
centriolar coiled-coil protein of 110 kDa-like

GO: NA

KEGG:

id description
K16453 CCP110, CEP110; centrosomal protein CEP110

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941712.1 True 3496 mRNA 0.55 14 58428372 58446189

Neighbor

gene id symbol gene type direction distance location
LOC118938097 NA coding upstream 79109 58348530 ~ 58349263 (+)
LOC110514297 gprc5b coding upstream 80829 58312756 ~ 58347543 (+)
LOC110486945 fa10 coding upstream 132984 58286258 ~ 58295388 (+)
LOC110486938 LOC106611499 coding upstream 232893 58131285 ~ 58195479 (+)
LOC110485250 LOC106606520 coding upstream 318178 58083262 ~ 58110194 (+)
LOC110538555 NA coding downstream 75174 58521363 ~ 58557066 (+)
LOC110518424 LOC106606554 coding downstream 283502 58729691 ~ 58762694 (+)
LOC110487024 LOC106606483 coding downstream 693881 59140048 ~ 59251086 (+)
LOC110487014 LOC106606516 coding downstream 806107 59252296 ~ 59259759 (+)
LOC110487018 LOC106606511 coding downstream 813773 59259962 ~ 59267092 (+)
G1190995 NA non-coding upstream 2314 58425513 ~ 58426058 (+)
G1190994 NA non-coding upstream 3935 58424131 ~ 58424437 (+)
G1190991 NA non-coding upstream 9597 58418428 ~ 58418775 (+)
G1190990 NA non-coding upstream 10180 58417904 ~ 58418192 (+)
G1190986 NA non-coding upstream 15206 58412299 ~ 58413166 (+)
G1191008 NA non-coding downstream 2219 58448408 ~ 58511397 (+)
G1191042 NA non-coding downstream 46141 58492330 ~ 58570817 (+)
G1191041 NA non-coding downstream 127745 58573934 ~ 58575704 (+)
G1191068 NA non-coding downstream 129530 58575719 ~ 58584498 (+)
G1191075 NA non-coding downstream 147842 58594031 ~ 58603609 (+)
G1190689 NA other upstream 387077 58040886 ~ 58041295 (+)
G1190568 NA other upstream 433870 57950494 ~ 57994502 (+)
LOC110514101 LOC106606600 other upstream 787814 57522756 ~ 57640558 (+)
LOC110486909 LOC106601794 other upstream 802967 57613961 ~ 57625405 (+)
G1189819 NA other upstream 1372755 57054453 ~ 57055617 (+)
G1191444 NA other downstream 821882 59268071 ~ 59270262 (+)
G1191529 LOC106601890 other downstream 939983 59381313 ~ 59388776 (+)
G1191622 NA other downstream 1179646 59625835 ~ 59626661 (+)
LOC110486998 LOC106606498 other downstream 1466909 59912124 ~ 59920162 (+)

Expression


Co-expression Network