LOC110514412


Basic Information

Item Value
gene id LOC110514412
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58561680 ~ 58588526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941722.1
CTGAAAAGCTTGAACGACCAACGGTCAGAAAAAGTGATGAGAGACTATGTGAATGGAGCGTATGGGATCCTCTCCCTGGTCCACGTGGTAAACCATGAGATCACCAAATCGATGGAGACCGAAAAAGAAAAATTGCACAAACTTCTAGAACAAAGGCTGGAAGATGAGCTCCAGAACATTGACCAGTTCATGTCAGACATTCACATGGAGTTTGACAAGTGCCTTTCAGCCGGAGTGCTAGAGTCAGAGAAGACATGTGTGACAAGAGCCAAGGAGGAAGTGATAGCACCAaaaggaaaaggaggaggagggtaccACCAGACCCTGAGAGCTGTATGCAACGGCCAGGGGTTCTGCAGGTCAACAAATGgagtaaaaacaaacatgaaCGCTTCACTGAGCAGCTCTCTGTGcgattccattaaaaaaatgttttcaaaaaCATTCAAGAAATCTCAGAAATCTATCTCTGCAAAGATTGATAATTTCAGCATCCTCTTAGAGAGCTATGATGAAGAAACCATGTTTCCTCGGCTGGCATTCCTCAAAACTGAGGAACACAAATTGAAAGCAGATCTTAAAAATGAGATCGTCCAGAGGAAGAAGACAATCTACTCTTCACTCACCAAGTCAATCATGACCTCCATGCTCCCCTCCTATATAGAGGCTTCAGATGTACATGGGAAAGGATCCCTAAAGAGAATGCAGGACATACTCGAGAGTCACATTGAGTCATCAAAGAGCACCATGTTCCACGATGCTAAGGGGAAGATGCTGACACTCCTAGCCAAGCTCAGGGAACACATTGTGCAGGAGCTAAGGTCTAAACTAAAGGAAGCTGTGAAGCAGTCACTCCACAATGAGCTACCTCTCCCAGATATATCTGAGCACTATGAGATAGTGAAGAGCGCCCATGAAAAAATGATGAGTAAACCTATCACAGATGTTGAAGATGAGAAACGTGTTCCAGAACACAGCTCGGGGAAGGAAACGACATCTGagcagGTTCCACTTCGAAACAACAGGAATGatgagaagacaaagaagaagaagaaacaaaaGAAAAGGGCGAAGGATGTTCTTGCAGGGGCTCTTTCACCTGAAATCCCAGGTGCTGCGTTTGTGGATAAGCACATGAGTGCACTAATCAAGAGGGTCACAATGGTGATGGCTATAGCAGATGACCTACTGGGAGAGGACATGATCCAAGATGAAATGTATTCGATTATTGATGTAGCCGAGACCAGTGAGAAAAAAATGAGAGTTATGTACAAGGCTCTACGCTCAGGAGGACCACTGATTAAATCAGCCTTCTACACAGCTCTCCAAACTAATGAACCTAATCTTGTCAACGACTTGGCTTCCCCCTGAAGACAGACCTGGCTTGGGTTGGTCCTCAAGTGCTGGACAAAGGGCAGCAAGCAGTCTCACCGGCTGTGGGACAGCAGCGGAGTTACTATCCTCCTAATGCCCCTATGGGTGTTGGGGGATATAACCAACTAGCTCTATCATCCTTTTTGTAGTTGTTGTGGCTTTATTTTTGTGGCAAACTGAAATCTGTGCTCTTGCAATCTGCTATAGCCTGGTACTTTGTTTTCCTCAgaatgttttgtgtgttttgtttttatcAAACCCATCTTTAGTGTTCTTACTGTATGTGTGAGGGGAAAGGGACAACCCAAAACTGGTTAAATATGATGTTAGTTTAAAAAACTTGTGCATGCATAAATACTTGAGGACAGCAGAGGGACAAACAGGTTGAGTGGTATGTATGCTTGTTAATTGATTTATGCATTATTTTATTTGGTACATAATACAATCATGTTATGTGGAAATGTTTGTCACAATTTATTTGACCAGAGGACAATACCAGTGGAAACAGTGCCATGAAGTAATGTGCAACCCAAGATAAAATATTGGTCATGTatgtaacattttattttagATGTGTGCTTGATTATACCGATGAATTCTGTTTATCTCTGTTGTAGCTTATATTCTGATTGTATTATGGTACCTGGTTTATATCATCATTCATTCTGTTTGTTCAAAGTAATCTCTAAATCATCATTATATCTTCAACTAGTTTTACATTTTATGTTTCTGTGTTGAATGTCTCATTGTTTCATTTTTTTcctcaataaaaataaatgtta
>XM_036941723.1
CTGAAAAGCTTGAACGACCAACGGTCAGAAAAAGTGATGAGAGACTATGTGAATGGAGCGTATGGGATCCTCTCCCTGGTCCACGTGGTAAACCATGAGATCACCAAATCGATGGAGACCGAAAAAGAAAAATTGCACAAACTTCTAGAACAAAGGCTGGAAGATGAGCTCCAGAACATTGACCAGTTCATGTCAGACATTCACATGGAGTTTGACAAGTGCCTTTCAGCCGGAGTGCTAGAGTCAGAGAAGACATGTGTGACAAGAGCCAAGGAGGAAGTGATAGCACCAaaaggaaaaggaggaggagggtaccACCAGACCCTGAGAGCTGTATGCAACGGCCAGGGGTTCTGCAGGTCAACAAATGgagtaaaaacaaacatgaaCGCTTCACTGAGCAGCTCTCTGTGcgattccattaaaaaaatgttttcaaaaaCATTCAAGAAATCTCAGAAATCTATCTCTGCAAAGATTGATAATTTCAGCATCCTCTTAGAGAGCTATGATGAAGAAACCATGTTTCCTCGGCTGGCATTCCTCAAAACTGAGGAACACAAATTGAAAGCAGATCTTAAAAATGAGATCGTCCAGAGGAAGAAGACAATCTACTCTTCACTCACCAAGTCAATCATGACCTCCATGCTCCCCTCCTATATAGAGGCTTCAGATGTACATGGGAAAGGATCCCTAAAGAGAATGCAGGACATACTCGAGAGTCACATTGAGTCATCAAAGAGCACCATGTTCCACGATGCTAAGGGGAAGATGCTGACACTCCTAGCCAAGCTCAGGGAACACATTGTGCAGGAGCTAAGGTCTAAACTAAAGGAAGCTGTGAAGCAGTCACTCCACAATGAGCTACCTCTCCCAGATATATCTGAGCACTATGAGATAGTGAAGAGCGCCCATGAAAAAATGATGAGTAAACCTATCACAGATGTTGAAGATGAGAAACGTGTTCCAGAACACAGCTCGGGGAAGGAAACGACATCTGagcagGTTCCACTTCGAAACAACAGGAATGatgagaagacaaagaagaagaagaaacaaaaGAAAAGGGCGAAGGATGTTCTTGCAGGTGCTGCGTTTGTGGATAAGCACATGAGTGCACTAATCAAGAGGGTCACAATGGTGATGGCTATAGCAGATGACCTACTGGGAGAGGACATGATCCAAGATGAAATGTATTCGATTATTGATGTAGCCGAGACCAGTGAGAAAAAAATGAGAGTTATGTACAAGGCTCTACGCTCAGGAGGACCACTGATTAAATCAGCCTTCTACACAGCTCTCCAAACTAATGAACCTAATCTTGTCAACGACTTGGCTTCCCCCTGAAGACAGACCTGGCTTGGGTTGGTCCTCAAGTGCTGGACAAAGGGCAGCAAGCAGTCTCACCGGCTGTGGGACAGCAGCGGAGTTACTATCCTCCTAATGCCCCTATGGGTGTTGGGGGATATAACCAACTAGCTCTATCATCCTTTTTGTAGTTGTTGTGGCTTTATTTTTGTGGCAAACTGAAATCTGTGCTCTTGCAATCTGCTATAGCCTGGTACTTTGTTTTCCTCAgaatgttttgtgtgttttgtttttatcAAACCCATCTTTAGTGTTCTTACTGTATGTGTGAGGGGAAAGGGACAACCCAAAACTGGTTAAATATGATGTTAGTTTAAAAAACTTGTGCATGCATAAATACTTGAGGACAGCAGAGGGACAAACAGGTTGAGTGGTATGTATGCTTGTTAATTGATTTATGCATTATTTTATTTGGTACATAATACAATCATGTTATGTGGAAATGTTTGTCACAATTTATTTGACCAGAGGACAATACCAGTGGAAACAGTGCCATGAAGTAATGTGCAACCCAAGATAAAATATTGGTCATGTatgtaacattttattttagATGTGTGCTTGATTATACCGATGAATTCTGTTTATCTCTGTTGTAGCTTATATTCTGATTGTATTATGGTACCTGGTTTATATCATCATTCATTCTGTTTGTTCAAAGTAATCTCTAAATCATCATTATATCTTCAACTAGTTTTACATTTTATGTTTCTGTGTTGAATGTCTCATTGTTTCATTTTTTTcctcaataaaaataaatgtta
>TU1358845
GCTGAAAAGCTTGAACGACCAACGGTCAGAAAAAGTGATGAGAGACTATGTGAATGGAGCGTATGGGATCCTCTCCCTGGTCCACGTGGTAAACCATGAGATCACCAAATCGATGGAGACCGAAAAAGAAAAATTGCACAAACTTCTAGAACAAAGGCTGGAAGATGAGCTCCAGAACATTGACCAGTTCATGTCAGACATTCACATGGAGTTTGACAAGTGCCTTTCAGCCGGAGTGCTAGAGTCAGAGAAGACATGTGTGACAAGAGCCAAGGAGGAAGTGATAGCACCAGTAAGTCAATGGTACCTTATGCTGGGCCATAAGGTTCTAGCAGGGTTCAATGGAGTTTTACTTCTTCAAACTTGATCTGAGCGCAGTTTATTAAATCTTGTTCTGAGCCCAGATTATTCAATCTTGTTCTGAGCGTAATTTATTCAACCTTGTTCTAAATGCAGCTCTTTCTCAAGATCAATGGTCTGTTAATCTGTTAGTATGCtaaatagttaaatagttaaccaataccTACCCAAACTATCTACATTGACCGTTTTTGCACTGTCTCTTTTGACTCATAGCAtgcactgctgttactgtttattatctatcatgttacctagtcactttatccctacctatatgtatatatctacctcaattacctcgtacccctgcacattgacatggtactggtaccccatgtacagttgaagtcggaagtttacctacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatccaagtaaaaattccctgtcttaggtcagttagggtgaccactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttttatttctttcatcacattcccagtgggtcagaagttcacatacactcaattagcatttggtagcattgcctttaaattgtttaacttgggtcaaatgttttgggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacacgctttttcagttttg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941722.1 False 2156 mRNA 0.41 12 58561680 58588525
XM_036941723.1 False 2132 mRNA 0.41 12 58561680 58588525
TU1358845 True 1106 TUCP 0.40 2 58587325 58588526

Neighbor

gene id symbol gene type direction distance location
LOC110538556 LOC106606549 coding downstream 53851 58504750 ~ 58507829 (-)
LOC110538558 LOC106606549 coding downstream 61713 58454343 ~ 58499967 (-)
LOC110486946 LOC106601863 coding downstream 135627 58372669 ~ 58426053 (-)
iqck LOC106606545 coding downstream 190347 58352727 ~ 58371333 (-)
LOC110486937 LOC106606542 coding downstream 287391 58242507 ~ 58274289 (-)
LOC110486955 NA coding upstream 253 58588778 ~ 58603975 (-)
LOC110512346 cggbp1 coding upstream 25863 58614388 ~ 58617674 (-)
LOC110486950 NA coding upstream 36409 58624934 ~ 58666018 (-)
LOC118938334 NA coding upstream 80092 58668617 ~ 58672886 (-)
LOC118938335 NA coding upstream 86894 58675419 ~ 58679236 (-)
G1191187 NA non-coding downstream 50257 58510541 ~ 58511423 (-)
G1191166 LOC106606549 non-coding downstream 54319 58454351 ~ 58507361 (-)
G1191186 NA non-coding downstream 113811 58446718 ~ 58447869 (-)
G1191176 NA non-coding downstream 153278 58407816 ~ 58408402 (-)
G1191174 NA non-coding downstream 155144 58406331 ~ 58406536 (-)
G1191265 NA non-coding upstream 118220 58706745 ~ 58707672 (-)
G1191273 NA non-coding upstream 134677 58723202 ~ 58723434 (-)
G1191275 NA non-coding upstream 137217 58725742 ~ 58725976 (-)
G1191290 NA non-coding upstream 158562 58747087 ~ 58747403 (-)
G1191299 NA non-coding upstream 176181 58764706 ~ 58764989 (-)
G1190628 NA other downstream 567656 57964952 ~ 57994099 (-)
LOC110486915 LOC106606556 other downstream 854890 57698059 ~ 57706813 (-)
G1190405 NA other downstream 1062525 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 1471765 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 1476209 57054453 ~ 57085521 (-)
G1191298 LOC106606554 other upstream 171198 58759723 ~ 58762086 (-)
G1191335 NA other upstream 279538 58868063 ~ 58868971 (-)
G1192082 NA other upstream 317628 58906153 ~ 58909232 (-)
G1192158 NA other upstream 531487 59119541 ~ 59121156 (-)
G1191230 NA non-coding downstream 19033 58567742 ~ 58568292 (-)

Expression


Co-expression Network