LOC110487014 (LOC106606516)


Basic Information

Item Value
gene id LOC110487014
gene name LOC106606516
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59252296 ~ 59259759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558909.2
ACTCTCCACTATGGCTCTAGCCATAGAAATATCATATATTTCTgtcattctattctattgtatttcTATGGCTCAGACTGCAGCTATCTCGAGTACAGTGTGAGCGTGgtacctctctctcgtctctgctCCATAGCAACGACCTCTAGATCGGTGTGTACTATGAACTAGAAACCGACTGATGCTCTCTCCTTTCAAATCTCGGATTCTGCAACATCCCATCGCAATATAATATGGTGTGTTTTTATTTTGTGAAGCTGGAGCAGTGAGTCGGCTGTGTCTGGAATTATGCGTAATTTAACTCTTGGTTTTTTTTGCTGTGTCTGGTAGTTAGTTACCTAAGCGCATGCATCTCGGTCTCAACTTGGAATCTCACACCAGCAAGGAACTATCATTCGGTGATCAAGTAGATCGATCAAATAAATGAGGATTGAGAACAGTGACAGTGTATTGATTTTATCATTGGAGACATTTTAATCAACGCTTCTAAACGATGTTACAAATTGGAGACGAAGTTTATTTCTCAGCGGTATTTCTGCTGGTTCTATTCGGGACCAGGAGCGCGATTGGAGCATCGGCCGTCACCGCATCCATTTACGTCTTTATCGTGATGTTCCGGTTCCCACAAGTGCCGGCTGACCAGGCAAGTCAGGTGCTGCGGCCCACTGGCCTTGCGAGCGCCGGCGTCCCCGTGGTTGCGCACCGGGCAGGGGGACACGATGCTCCGGAGAACACCATTGCAGCGATCCGAGAGgCCAGCAGGAATGGAGCCACAGGGGTGGAGCTGGACTTGGGCTTCACTGCAGATGGAGAGGCAGTGCTGATGCACGATGAGACGGTGGACCGCACCACCAACGGGACGGGAGCGGTGGGCACGCTGCGTCTGGCAGAGCTCAGGACGCTGGACGCCACGGGCAAACACAGGCTCGGGGAGAAGTTCAAGGGGGAGAGGGTGCCAACGCTTCAGGAGGCAGTGGAGGAATGCATCAACCACCAGCTGACCATCTTCTTTGATGTCAAAGATCAACCTGATAAGGCAGCTGCAGCCCTAGGGGAGATGTATCACAAACACCCTGTCCTCTACAACTCCAGCATTGTCTGCTCCTTTCAACCTAAAGTTATCTACAAGATGCGCCAGGCGGACCCTGGGGTGGTCACGGCCCTGACCCACCGGCCCTGGAGCCTCAGTCGCTATGGCGATGGAACACCCCGTTCCCTGTCAGCGTGGACAAACTACTGGCTGGGAGttctggatgtgctgctggactGGGCCCACCATCACCTGTTGTGGAACCTGTGTGGCGTCTCAGCCATCCTCATGCAGAAGGACTTCATCTCCCTGTCTCCACTCCCCTCATCTATCCCTCTCTACAGAGACTATGTCCAGTACTGGGCAGAGCGAGGGGTGGAGGTGGTGGGCTGGACCATCAACACGGCCGTGGATAAACAGTACTACCAAGATGTCCTGAAGATCAGCTACATCACTGACAGCCTGAGGGAAGACTGTGAGCCTCACTACTGactgacacacaacacacacgcaaTTCTAGACTACTACCTAACAACGTGTAGTTGTACAAGGACTCAGACCTCACTATCATAGGGAATATGGAGTATGAATgtacaggacagtacacatcCAATATAGCTGCATAGCAGATCATTTTCTAGTTCAGGTTGCCCCTTTTAACCAGAATAGTTTTTACTGCAAACACTCATACAAGATCATACAATGTCAACCCTAATTTGGCAACTATACTACACCAACAATACCACCATAATCTCAGAAATACTCTCTTGGACCAATCATCACACCACTAAATGCAGACAATTTGCTAATTTTGAATTGTTCATCTTAATACAAATCTGTAAGAGATTATGCTACATTCATTAATATTGTATTAACAATATGACACTGATATATCAATGGTACAAAATATAACTATCTTTGTTGACATGTATCTTTGATTTCTCAATGAAAACATGATGTACAATGTATCCTTTATGAAACCATGTTATTTATTGTGACTACTGCAGGCCCACTGTAAATATTGGAAAAATAAATATCCCCTACATGCAGA
>XM_021558910.2
CTAGCCATAGAAATATCATATATTTCTgtcattctattctattgtatttcTATGGCTCAGACTGCAGCTATCTCGAGTACAGTGTGAGCGTGgtacctctctctcgtctctgctCCATAGCAACGACCTCTAGATCGGTGTGTACTATGAACTAGAAACCGACTGATGCTCTCTCCTTTCAAATCTCGGATTCTGCAACATCCCATCGCAATATAATATGGTGTGTTTTTATTTTGTGAAGCTGGAGCAGTGAGTCGGCTGTGTCTGGAATTATGCGTAATTTAACTCTTGGTTTTTTTTGCTGTGTCTGGTAGTTAGTTACCTAAGCGCATGCATCTCGGTCTCAACTTGGAATCTCACACCAGCAAGGAACTATCATTCGGTGATCAAGTAGATCGATCAAATAAATGAGGATTGAGAACAGTGACAGTGTATTGATTTTATCATTGGAGACATTTTAATCAACGCTTCTAAACGATGTTACAAATTGGAGACGAAGTTTATTTCTCAGCGGTATTTCTGCTGGTTCTATTCGGGACCAGGAGCGCGATTGGAGCATCGGCCGTCACCGCATCCATTTACGTCTTTATCGTGATGTTCCGGTTCCCACAAGTGCCGGCTGACCAGGCAAGTCAGGTGCTGCGGCCCACTGGCCTTGCGAGCGCCGGCGTCCCCGTGGTTGCGCACCGGGCAGGGGGACACGATGCTCCGGAGAACACCATTGCAGCGATCCGAGAGgCCAGCAGGAATGGAGCCACAGGGGTGGAGCTGGACTTGGGCTTCACTGCAGATGGAGAGGCAGTGCTGATGCACGATGAGACGGTGGACCGCACCACCAACGGGACGGGAGCGGTGGGCACGCTGCGTCTGGCAGAGCTCAGGACGCTGGACGCCACGGGCAAACACAGGCTCGGGGAGAAGTTCAAGGGGGAGAGGGTGCCAACGCTTCAGGAGGCAGTGGAGGAATGCATCAACCACCAGCTGACCATCTTCTTTGATGTCAAAGATCAACCTGATAAGGCAGCTGCAGCCCTAGGGGAGATGTATCACAAACACCCTGTCCTCTACAACTCCAGCATTGTCTGCTCCTTTCAACCTAAAGTTATCTACAAGATGCGCCAGGCGGACCCTGGGGTGGTCACGGCCCTGACCCACCGGCCCTGGAGCCTCAGTCGCTATGGCGATGGAACACCCCGTTCCCTGTCAGCGTGGACAAACTACTGGCTGGGAGttctggatgtgctgctggactGGGCCCACCATCACCTGTTGTGGAACCTGTGTGGCGTCTCAGCCATCCTCATGCAGAAGGACTTCATCTCCCTAGACTATGTCCAGTACTGGGCAGAGCGAGGGGTGGAGGTGGTGGGCTGGACCATCAACACGGCCGTGGATAAACAGTACTACCAAGATGTCCTGAAGATCAGCTACATCACTGACAGCCTGAGGGAAGACTGTGAGCCTCACTACTGactgacacacaacacacacgcaaTTCTAGACTACTACCTAACAACGTGTAGTTGTACAAGGACTCAGACCTCACTATCATAGGGAATATGGAGTATGAATgtacaggacagtacacatcCAATATAGCTGCATAGCAGATCATTTTCTAGTTCAGGTTGCCCCTTTTAACCAGAATAGTTTTTACTGCAAACACTCATACAAGATCATACAATGTCAACCCTAATTTGGCAACTATACTACACCAACAATACCACCATAATCTCAGAAATACTCTCTTGGACCAATCATCACACCACTAAATGCAGACAATTTGCTAATTTTGAATTGTTCATCTTAATACAAATCTGTAAGAGATTATGCTACATTCATTAATATTGTATTAACAATATGACACTGATATATCAATGGTACAAAATATAACTATCTTTGTTGACATGTATCTTTGATTTCTCAATGAAAACATGATGTACAATGTATCCTTTATGAAACCATGTTATTTATTGTGACTACTGCAGGCCCACTGTAAATATTGGAAAAATAAATATCCCCTACATGCAGA

Function

NR:

description
glycerophosphodiester phosphodiesterase 1-like

GO: NA

KEGG:

id description
K01126 E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558909.2 False 2081 mRNA 0.48 6 59252296 59259759
XM_021558910.2 True 2032 mRNA 0.47 6 59252312 59259759

Neighbor

gene id symbol gene type direction distance location
LOC110487024 LOC106606483 coding upstream 1210 59140048 ~ 59251086 (+)
LOC110518424 LOC106606554 coding upstream 489602 58729691 ~ 58762694 (+)
LOC110538555 NA coding upstream 695230 58521363 ~ 58557066 (+)
LOC110486947 LOC106601860 coding upstream 806107 58428372 ~ 58446189 (+)
LOC118938097 NA coding upstream 903033 58348530 ~ 58349263 (+)
LOC110487018 LOC106606511 coding downstream 203 59259962 ~ 59267092 (+)
LOC118938338 LOC106606494 coding downstream 286526 59546285 ~ 59624228 (+)
LOC110512482 LOC106601886 coding downstream 468492 59728251 ~ 59783709 (+)
LOC110486998 LOC106606498 coding downstream 652365 59912124 ~ 59920162 (+)
LOC110486993 LOC106606421 coding downstream 698433 59958192 ~ 59970372 (+)
G1191463 NA non-coding upstream 13018 59238927 ~ 59239278 (+)
G1191461 NA non-coding upstream 15126 59236962 ~ 59237170 (+)
G1191456 NA non-coding upstream 26083 59225984 ~ 59226213 (+)
G1191455 NA non-coding upstream 29129 59222960 ~ 59223167 (+)
G1191517 NA non-coding downstream 96222 59355981 ~ 59356569 (+)
G1191529 LOC106601890 non-coding downstream 121554 59381313 ~ 59388776 (+)
G1191530 NA non-coding downstream 129381 59389140 ~ 59389949 (+)
G1191531 NA non-coding downstream 130793 59390552 ~ 59390766 (+)
G1190689 NA other upstream 1211001 58040886 ~ 58041295 (+)
G1190568 NA other upstream 1257794 57950494 ~ 57994502 (+)
LOC110514101 LOC106606600 other upstream 1611738 57522756 ~ 57640558 (+)
G1191444 NA other downstream 8312 59268071 ~ 59270262 (+)
G1191622 NA other downstream 366076 59625835 ~ 59626661 (+)

Expression


Co-expression Network