LOC118938341


Basic Information

Item Value
gene id LOC118938341
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 60304345 ~ 60307074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035625.1
ttcccactgattcgtgggtagttattttctgtttagtgtgttgtttcacctgacaggactgCTATCCAAAAAATATGGCTCCATCTATGGTTCACTTTGGACCCAAGAAAGTGGTTGTTCTGGCAGGATACAAGATGGTCAAGCAGGCGCTGGTCAACCATGCAGAGGAGTTTGGGGACAGGGGAACGCCGCCTGTGTTCTAAGATTTCACCAGTGGACATGGAATTCTGGTTGCCAATGGAGACTCATGGAAAGAGATGAGATGCTTTGCCGTAGCGAACCTTAGACTTTGGCATGGGCAAGAAAGGAAGTCAGGAGGAAATTCGCTACCTTATTCAATTGTTAGAAAAAACATGAGGGAAAAATTTGAAGTTACGATTTTTGAATACCCAAATAAGATAACAAATATATACATGTTCTTAGTTTTGCTAATTCTCTTTCTGTTGGGCTTTGTGACAGGTAAAGCATTTGACACAACCCAGCCAATGAATTATGATGTCTCCAATGTAATCTCCAACATTGTGTATGGCAGCAGGTTTGAATACTCTGACCCCAAGATCCAAGCCAATGAGAACCTCCAGAATTAGTGGCTCTGTTTCAATGCAGGTACATGATGTTTACTTTGTTTCTCACTCTTAGAGAATAATGCCAAACTGTTCACACTTGACTAAAccaggaaaataaaataaatattccaTTTGTAGTAGGCTACATTCATGCTTTACTTTTTGTTTATGGGAAGATAGTGGTACAACATGTTCCCATGGCTGGGGCCTTGGCTGAAAACCAATAAGCTTTTGTTAAAGAATATTGACAACAAGAAGGAAATGAGGGAACTGGTGTGTGGGCTGAAGAAGACCCAGAACTTCAACCGTGTATAAACTTTTTGATAATACAAGGGTTAAAATTCTTGAAATGAATAACTTGCATCtaaggcaggggtgtcaaactcattcattGGAGGGCCTactgtctgcaggtttttgttttttcctttcaattaagccctAAAC
>TU1359740
ccatacttaggtagcctgtgttcccactgattcgtgggtagttattttctgtttagtgtgttgtttcacctgacaggactgCTATCCAAAAAATATGGCTCCATCTATGGTTCACTTTGGACCCAAGAAAGTGGTTGTTCTGGCAGGATACAAGATGGTCAAGCAGGCGCTGGTCAACCATGCAGAGGAGTTTGGGGACAGGGGAACGCCGCCTGTGTTCTAAGATTTCACCAGTGGACATGGAATTCTGGTTGCCAATGGAGACTCATGGAAAGAGATGAGATGCTTTGCCGTAGCGAACCTTAGACTTTGGCATGGGCAAGAAAGGAAGTCAGGAGGAAATTCGCTACCTTATTCAATTGTTAGAAAAAACATGAGGGAAAAATTTGAAGTTACGATTTTTGAATACCCAAATAAGATAACAAATATATACATGTTCTTAGTTTTGCTAATTCTCTTTCTGTTGGGCTTTGTGACAGGTAAAGCATTTGACACAACCCAGCCAATGAATTATGATGTCTCCAATGTAATCTCCAACATTGTGTATGGCAGCAGGTTTGAATACTCTGACCCCAAGATCCAAGCCAATGAGAACCTCCAGAATTAGTGGCTCTGTTTCAATGCAGGTACATGATGTTTACTTTGTTTCTCACTCTTAGAGAATAATGCCAAACTGTTCACACTTGACTAAAccaggaaaataaaataaatattccaTTTGTAGTAGGCTACATTCATGCTTTACTTTTTGTTTATGGGAAGATAGTGGTACAACATGTTCCCATGGCTGGGGCCTTGGCTGAAAACCAATAAGCTTTTGTTAAAGAATATTGACAACAAGAAGGAAATGAGGGAACTGGTGTGTGGGCTGAAGAAGACCCAGAACTTCAACCGTGTATAAACTTTTTGATAATACAAGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035625.1 False 1013 mRNA 0.40 3 60305711 60307074
TU1359740 True 921 TUCP 0.41 3 60304345 60306962
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Neighbor

gene id symbol gene type direction distance location
LOC110486985 LOC106601851 coding upstream 61431 60220292 ~ 60244280 (+)
LOC110486990 NA coding upstream 88696 60208766 ~ 60217015 (+)
LOC110486982 LOC106606453 coding upstream 122253 60162746 ~ 60183458 (+)
LOC110511678 cyp2k4 coding upstream 158226 60134442 ~ 60147485 (+)
LOC110485257 abca3 coding upstream 180793 60041885 ~ 60124918 (+)
LOC110511221 cyp2k4 coding downstream 45987 60353061 ~ 60366991 (+)
LOC110486981 LOC106601855 coding downstream 79847 60386921 ~ 60393020 (+)
LOC110515874 LOC106601846 coding downstream 124782 60431856 ~ 60458629 (+)
LOC100136292 LOC100136292 coding downstream 371315 60678389 ~ 60682695 (+)
LOC110486975 LOC106606457 coding downstream 477068 60784142 ~ 60785716 (+)
G1191788 LOC106601851 non-coding upstream 62864 60181074 ~ 60242847 (+)
G1191863 NA non-coding upstream 171688 60133707 ~ 60134023 (+)
G1191861 NA non-coding upstream 176813 60128253 ~ 60128898 (+)
G1191811 NA non-coding upstream 309678 59995572 ~ 59996033 (+)
G1191810 NA non-coding upstream 313380 59992022 ~ 59992331 (+)
G1191935 NA non-coding downstream 3099 60310173 ~ 60310437 (+)
G1191962 NA non-coding downstream 48606 60355680 ~ 60355960 (+)
G1191965 NA non-coding downstream 63372 60370446 ~ 60370755 (+)
G1191967 NA non-coding downstream 67314 60374388 ~ 60374623 (+)
G1191968 LOC106606405 non-coding downstream 70791 60377865 ~ 60379656 (+)
G1191844 NA other upstream 184571 60064762 ~ 60121140 (+)
LOC110485258 LOC106606416 other upstream 267150 60020410 ~ 60041199 (+)
G1191801 NA other upstream 343034 59962043 ~ 59962677 (+)
LOC110486993 LOC106606421 other upstream 346302 59958192 ~ 59970372 (+)
LOC110486998 LOC106606498 other upstream 391465 59912124 ~ 59920162 (+)
G1193515 NA other downstream 1215330 61522404 ~ 61523070 (+)
G1193742 NA other downstream 1481914 61788988 ~ 61846023 (+)
G1193964 LOC106606437 other downstream 1811411 62118416 ~ 62121427 (+)
G1193989 NA other downstream 1882651 62189725 ~ 62191046 (+)

Expression

LOC118938341 Expression in all Baseline Samples

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LOC118938341 Expression in each Bioproject

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LOC118938341 Expression in each Sample
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Co-expression Network