Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110512085 |
| gene name | LOC106601929 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 61946652 ~ 62016705 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase rnf213-alpha-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941805.1 | False | 17626 | mRNA | 0.51 | 66 | 61946652 | 62015668 |
| XM_036941800.1 | False | 17893 | mRNA | 0.51 | 67 | 61946652 | 62016287 |
| XM_036941802.1 | False | 17876 | mRNA | 0.51 | 67 | 61946652 | 62016287 |
| XM_036941803.1 | False | 17874 | mRNA | 0.51 | 67 | 61946652 | 62016287 |
| XM_036941804.1 | False | 17383 | mRNA | 0.51 | 67 | 61946652 | 62016479 |
| XM_036941798.1 | False | 17514 | mRNA | 0.51 | 67 | 61946652 | 62016704 |
| XM_036941799.1 | False | 17495 | mRNA | 0.51 | 67 | 61946652 | 62016704 |
| XM_036941806.1 | False | 17374 | mRNA | 0.51 | 66 | 61946652 | 62016705 |
| XM_036941807.1 | False | 16158 | mRNA | 0.52 | 64 | 61958023 | 62015668 |
| TU1362171 | False | 863 | TUCP | 0.50 | 4 | 62007087 | 62016600 |
| TU1362172 | True | 2033 | TUCP | 0.45 | 3 | 62007087 | 62016600 |
61,930,000
61,940,000
61,950,000
61,960,000
61,970,000
61,980,000
61,990,000
62,000,000
62,010,000
62,020,000
62,030,000
62,040,000
62,050,000
62,060,000
62,070,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486965 | LOC100135781 | coding | downstream | 395941 | 61546265 ~ 61550711 (-) |
| LOC110538808 | LOC106601873 | coding | downstream | 920401 | 61005929 ~ 61026251 (-) |
| LOC110486976 | LOC106606471 | coding | downstream | 1380718 | 60460043 ~ 60565934 (-) |
| LOC110486979 | LOC106606406 | coding | downstream | 1537932 | 60403617 ~ 60408720 (-) |
| LOC118936527 | LOC106606405 | coding | downstream | 1559691 | 60377853 ~ 60386961 (-) |
| LOC110487040 | LOC106606439 | coding | upstream | 3000 | 62019705 ~ 62025559 (-) |
| LOC110487033 | LOC106606440 | coding | upstream | 13971 | 62030676 ~ 62064793 (-) |
| LOC110487041 | LOC105013038 | coding | upstream | 50399 | 62067104 ~ 62098264 (-) |
| LOC110487058 | LOC106606437 | coding | upstream | 104080 | 62118425 ~ 62160094 (-) |
| LOC118938342 | LOC106606436 | coding | upstream | 149544 | 62164135 ~ 62174550 (-) |
| G1194010 | NA | non-coding | downstream | 36876 | 61909381 ~ 61909776 (-) |
| G1193836 | NA | non-coding | downstream | 39182 | 61907174 ~ 61907470 (-) |
| G1193821 | NA | non-coding | downstream | 63620 | 61882794 ~ 61883032 (-) |
| G1193815 | NA | non-coding | downstream | 77451 | 61868954 ~ 61869201 (-) |
| G1193735 | NA | non-coding | downstream | 162867 | 61783468 ~ 61783785 (-) |
| G1194083 | NA | non-coding | upstream | 84916 | 62101621 ~ 62101913 (-) |
| G1194084 | NA | non-coding | upstream | 89693 | 62106398 ~ 62106734 (-) |
| G1194086 | NA | non-coding | upstream | 93297 | 62110002 ~ 62110217 (-) |
| G1194054 | NA | non-coding | upstream | 99062 | 62115767 ~ 62118209 (-) |
| G1193568 | NA | other | downstream | 361392 | 61584774 ~ 61585260 (-) |
| G1193386 | NA | other | downstream | 668994 | 61275745 ~ 61277658 (-) |
| G1192815 | NA | other | downstream | 1304467 | 60641675 ~ 60642185 (-) |
| G1192757 | NA | other | downstream | 1371455 | 60572370 ~ 60575197 (-) |
| G1194074 | NA | other | upstream | 53404 | 62070109 ~ 62070835 (-) |
| G1194306 | LOC106600182 | other | upstream | 439199 | 62455904 ~ 62499352 (-) |
| LOC118938346 | LOC106606432 | other | upstream | 453213 | 62469918 ~ 62474424 (-) |
| G1194521 | NA | other | upstream | 714249 | 62730954 ~ 62735710 (-) |
