LOC110487033 (LOC106606440)


Basic Information

Item Value
gene id LOC110487033
gene name LOC106606440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62030676 ~ 62064793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941814.1
TACCGGCAAGATTTGACCAGTGAGTAGTATAATCTATAGAAATTAATTGGACATATTCAATGTTCTTGAGGTTTACCTAATTTATCTTTATCGCGTGTTGAATTTTCAGCCCCAGTTTGTAGCAAACGTTACCGCAAAGATGTTCCGCTTTTTCAATATTCTGCCAGCCCCTCTGCAGATGTGCGTGAGATCAATTTGCTTTCACCCCGTACCCGACGTTACTGAGGATGAGAAAAGGGCGAAAATTCAAAGCTCTAATATAGAACGAGATTTGTTTGAACAAGCCAAGCTTGAGGTGAACGTGATCAAAATATTGCTACTTGGTGCTACAGAGAGTGGTAAGAGTACCATGGTCAAGCAGATGAAGGTCATCCACAGTCATGGCTTCTCCAAGCCAGAGCTTATTAGCTTCAAGGCTGCAGTGCTggataacctcctgacctccatgAAGTTTGTGCTGCGCGGCATGGGACTGCTGAGGATTAATCTGGCCAACAAGAAGAACAAGGCCCATGCCCGCTCTGTGCTGTCCTGTGGCCAGTGTTTCGGGGAGGACGGGGAGCTGCTGCCGTTTGTGGCCCTGTCTTTCTGTGCTCTCTGGGCCGACCAGGGTGTGAAAGCTGCAGCTGCCAGGGGCTATGAGTTCCAACTCAACGACTCAGCGCTCTATTTCTTTGAGAACATAAGTCGGATCATCTCTCCCAGATACATTCCCACTGAGGCGGACGTCCTGCGGGTGAGAGTGCGAACCTCCGGAATCATCGAGACTCAGTTTCCAGCCAATCACATGGTTTTCAGGATGTATGATGTGGGCGGCCAGCGGACCAAGAGGAGGAAGTGGCTCAGCTACTTTGACTGTGTCCGGGCCGTGCTGTTTGTTGTGGCGCTCAGTGACTACGACATGACCCTGACGGAGGACCGCTCTATGAACCGGCTACAAGAGAGCCTTGAACTCTTTACCTCCATCTGCACCAACATAGTTTTCAGAAGTACCTCATTGGAGCCGACAGGGACGTGGATGCTGCCTCGCGTCACATCACTGGCATGTTTGTGGCCTGCAACAGGACCCCCAACAAGCTTGTCTTCCACCACTACACCACCGCCACGGACACACACAACGTACGGGTGGTCTTCCACGTCGTCATGGACACCATCGTCAAGGAGAACTTGGAGGCGGTCTCGTTGCTATAAGACCTGACCTGGGTGCATTTGACTGCATCAGTGCCTTTAAAGACACTTTCTAGATTTTATTGATGGATATTTGTTTTTATATAATTTAATATAGGTAATATTTACTAATATAGATGGACATTCCTCATTTGGAATTTTTTTCAATAATCATGTTGGTGTTGACATTTTGTTTTAATTCAATAAAATAATGTACAGGC
>XM_036941813.1
TCTGCTTCAGTCTCGCGCTCGTGATTTGTATCTTCATGATATGAGCACGGGTCTTCTCCACTAATAATCCACAGGTGTTATCTGTTAGCCCCAGTTTGTAGCAAACGTTACCGCAAAGATGTTCCGCTTTTTCAATATTCTGCCAGCCCCTCTGCAGATGTGCGTGAGATCAATTTGCTTTCACCCCGTACCCGACGTTACTGAGGATGAGAAAAGGGCGAAAATTCAAAGCTCTAATATAGAACGAGATTTGTTTGAACAAGCCAAGCTTGAGGTGAACGTGATCAAAATATTGCTACTTGGTGCTACAGAGAGTGGTAAGAGTACCATGGTCAAGCAGATGAAGGTCATCCACAGTCATGGCTTCTCCAAGCCAGAGCTTATTAGCTTCAAGGCTGCAGTGCTggataacctcctgacctccatgAAGTTTGTGCTGCGCGGCATGGGACTGCTGAGGATTAATCTGGCCAACAAGAAGAACAAGGCCCATGCCCGCTCTGTGCTGTCCTGTGGCCAGTGTTTCGGGGAGGACGGGGAGCTGCTGCCGTTTGTGGCCCTGTCTTTCTGTGCTCTCTGGGCCGACCAGGGTGTGAAAGCTGCAGCTGCCAGGGGCTATGAGTTCCAACTCAACGACTCAGCGCTCTATTTCTTTGAGAACATAAGTCGGATCATCTCTCCCAGATACATTCCCACTGAGGCGGACGTCCTGCGGGTGAGAGTGCGAACCTCCGGAATCATCGAGACTCAGTTTCCAGCCAATCACATGGTTTTCAGGATGTATGATGTGGGCGGCCAGCGGACCAAGAGGAGGAAGTGGCTCAGCTACTTTGACTGTGTCCGGGCCGTGCTGTTTGTTGTGGCGCTCAGTGACTACGACATGACCCTGACGGAGGACCGCTCTATGAACCGGCTACAAGAGAGCCTTGAACTCTTTACCTCCATCTGCACCAACATAGTTTTCAGAAGTACCTCATTGATTCTGTTAATGAACAAAAGTGACCTCTTCCAGGAGAAGATCTTAAACTCAGGAAGGCATTTGCGACTCTACTTCCCTAGTTAcaaagGAGCCGACAGGGACGTGGATGCTGCCTCGCGTCACATCACTGGCATGTTTGTGGCCTGCAACAGGACCCCCAACAAGCTTGTCTTCCACCACTACACCACCGCCACGGACACACACAACGTACGGGTGGTCTTCCACGTCGTCATGGACACCATCGTCAAGGAGAACTTGGAGGCGGTCTCGTTGCTATAAGACCTGACCTGGGTGCATTTGACTGCATCAGTGCCTTTAAAGACACTTTCTAGATTTTATTGATGGATATTTGTTTTTATATAATTTAATATAGGTAATATTTACTAATATAGATGGACATTCCTCATTTGGAATTTTTTTCAATAATCATGTTGGTGTTGACATTTTGTTTTAATTCAATAAAATAATGTACAGGC
>XM_036941812.1
CACGTAATGTATTATAAAGCACTATGCATGTGTTTGTTTAAATAAAGCGATCAATTTAGTTATAGAACACTGTAATAGGTATTTGTAGGCTTTAACTAAATTCTGCTTCAGTCTCGCGCTCGTGATTTGTATCTTCATGATATGAGCACGGGTCTTCTCCACTAATAATCCACAGGTGTTATCTGTTAGGTCAGTTACCGGCAAGATTTGACCACCCCAGTTTGTAGCAAACGTTACCGCAAAGATGTTCCGCTTTTTCAATATTCTGCCAGCCCCTCTGCAGATGTGCGTGAGATCAATTTGCTTTCACCCCGTACCCGACGTTACTGAGGATGAGAAAAGGGCGAAAATTCAAAGCTCTAATATAGAACGAGATTTGTTTGAACAAGCCAAGCTTGAGGTGAACGTGATCAAAATATTGCTACTTGGTGCTACAGAGAGTGGTAAGAGTACCATGGTCAAGCAGATGAAGGTCATCCACAGTCATGGCTTCTCCAAGCCAGAGCTTATTAGCTTCAAGGCTGCAGTGCTggataacctcctgacctccatgAAGTTTGTGCTGCGCGGCATGGGACTGCTGAGGATTAATCTGGCCAACAAGAAGAACAAGGCCCATGCCCGCTCTGTGCTGTCCTGTGGCCAGTGTTTCGGGGAGGACGGGGAGCTGCTGCCGTTTGTGGCCCTGTCTTTCTGTGCTCTCTGGGCCGACCAGGGTGTGAAAGCTGCAGCTGCCAGGGGCTATGAGTTCCAACTCAACGACTCAGCGCTCTATTTCTTTGAGAACATAAGTCGGATCATCTCTCCCAGATACATTCCCACTGAGGCGGACGTCCTGCGGGTGAGAGTGCGAACCTCCGGAATCATCGAGACTCAGTTTCCAGCCAATCACATGGTTTTCAGGATGTATGATGTGGGCGGCCAGCGGACCAAGAGGAGGAAGTGGCTCAGCTACTTTGACTGTGTCCGGGCCGTGCTGTTTGTTGTGGCGCTCAGTGACTACGACATGACCCTGACGGAGGACCGCTCTATGAACCGGCTACAAGAGAGCCTTGAACTCTTTACCTCCATCTGCACCAACATAGTTTTCAGAAGTACCTCATTGATTCTGTTAATGAACAAAAGTGACCTCTTCCAGGAGAAGATCTTAAACTCAGGAAGGCATTTGCGACTCTACTTCCCTAGTTAcaaagGAGCCGACAGGGACGTGGATGCTGCCTCGCGTCACATCACTGGCATGTTTGTGGCCTGCAACAGGACCCCCAACAAGCTTGTCTTCCACCACTACACCACCGCCACGGACACACACAACGTACGGGTGGTCTTCCACGTCGTCATGGACACCATCGTCAAGGAGAACTTGGAGGCGGTCTCGTTGCTATAAGACCTGACCTGGGTGCATTTGACTGCATCAGTGCCTTTAAAGACACTTTCTAGATTTTATTGATGGATATTTGTTTTTATATAATTTAATATAGGTAATATTTACTAATATAGATGGACATTCCTCATTTGGAATTTTTTTCAATAATCATGTTGGTGTTGACATTTTGTTTTAATTCAATAAAATAATGTACAGGC

Function

NR:

description
guanine nucleotide-binding protein G(o) subunit alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941814.1 False 1388 mRNA 0.48 9 62030676 62064598
XM_036941813.1 False 1455 mRNA 0.48 11 62030676 62064692
XM_036941812.1 True 1581 mRNA 0.47 11 62030676 62064793

Neighbor

gene id symbol gene type direction distance location
LOC110487040 LOC106606439 coding downstream 5117 62019705 ~ 62025559 (-)
LOC110512085 LOC106601929 coding downstream 13971 61946652 ~ 62016705 (-)
LOC110486965 LOC100135781 coding downstream 479965 61546265 ~ 61550711 (-)
LOC110538808 LOC106601873 coding downstream 1004425 61005929 ~ 61026251 (-)
LOC110486976 LOC106606471 coding downstream 1464742 60460043 ~ 60565934 (-)
LOC110487041 LOC105013038 coding upstream 2311 62067104 ~ 62098264 (-)
LOC110487058 LOC106606437 coding upstream 55992 62118425 ~ 62160094 (-)
LOC118938342 LOC106606436 coding upstream 101456 62164135 ~ 62174550 (-)
LOC110485304 LOC106601897 coding upstream 110447 62175239 ~ 62180718 (-)
LOC110487059 notum coding upstream 119213 62184006 ~ 62205304 (-)
G1194010 NA non-coding downstream 120900 61909381 ~ 61909776 (-)
G1193836 NA non-coding downstream 123206 61907174 ~ 61907470 (-)
G1193821 NA non-coding downstream 147644 61882794 ~ 61883032 (-)
G1193815 NA non-coding downstream 161475 61868954 ~ 61869201 (-)
G1193735 NA non-coding downstream 246891 61783468 ~ 61783785 (-)
G1194083 NA non-coding upstream 36828 62101621 ~ 62101913 (-)
G1194084 NA non-coding upstream 41605 62106398 ~ 62106734 (-)
G1194086 NA non-coding upstream 45209 62110002 ~ 62110217 (-)
G1194054 NA non-coding upstream 50974 62115767 ~ 62118209 (-)
G1193568 NA other downstream 445416 61584774 ~ 61585260 (-)
G1193386 NA other downstream 753018 61275745 ~ 61277658 (-)
G1192815 NA other downstream 1388491 60641675 ~ 60642185 (-)
G1194074 NA other upstream 5316 62070109 ~ 62070835 (-)
G1194306 LOC106600182 other upstream 391111 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 405125 62469918 ~ 62474424 (-)
G1194521 NA other upstream 666161 62730954 ~ 62735710 (-)

Expression

LOC110487033(LOC106606440) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110487033(LOC106606440) Expression in each Bioproject

Bar chart with 8 bars.
LOC110487033(LOC106606440) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network