LOC110485137 (LOC106606428)


Basic Information

Item Value
gene id LOC110485137
gene name LOC106606428
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62850736 ~ 62856280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941851.1
CCTGCTTGTGCTACTGCACACTCCTTAGTTACAACAGACCCAGAAAGTTGTAGCTTACATTCTAATAGATAGCCTACAATAGATATATATTTCTGGAATGTTCATTGAAATTGCTGCAGGGTTTTTATTTTAGCTAATCAGACATATGAGGCagacacacagcctacatcatcatGTGGTTCACATTGGTTGAGAGTTCAGAAGAGGGTGAGTAAAGAGAGAAACCTGAAGGGGGGAGGGTAAGCACCAGCTACTTATATTGTTTTTGAAGAATCTGGGGGGAGGAAAGGGGCAGTTACCAAACAATGGATTTTTTAACACTTCTGAAACGTGAGCAAACTGATTTCCTGTCTTGTATTTTGTAGGTACTAGTCCTGGTGAGTCTAATGGTGACAGATGGGAGAACTGTGGCATGCTTTGGACGCAGTTACGAGACCAGGAATGAAAAGACGACTGAGCAACTACTGTGCTGTACATCAGTGGAACGAGGAGGAGAGCCATTGGAAACACCTTCGAGGCAACAGAAAAGTAAATGAATGGCCCAAAATGGAAATGTAAAAGGAAATGGAGGATGAATTTGTTTGTGGCTTTTCCAGATAAACCAGGATGAGAAGGAAGAAAACAAGGTTGACAGCCTCCTggttcattgaaatgacgtggaaacaacgttgatacaaccagtttgtgcccagtgggtatcaCATATAGTAAACCCCAGACTGACTGGACGGCTCTCAAGTTGAGAAGGTGGTTGACCATGGAGATGTCTGAGGACATTGTTTATGCCAATGAAGACGTTAGAGGAAAACAAAGTGTTTCAGGGGACCATTTTTATAATAGAGGAGACAACATCTATGAAGACATTTATGAAACTCCAGACACCATCAAGTTTAATGACTTCAGAAACAAGACTGAGGATGTTACCCCAAGGAGCAGACCAGGAGCTAAACTCTCAGAGTCTGAGCAACCAAAGAAGAGACCTTTAAGAGCTGCagcagtgtgtctggggctgtTGAGCgttctcctactggctgggatcataggACTGTACCTCTACTatgacagagtatataacaacTTGACTGAAGACAgggaccagctacagaccagttacaacaatctgattgcagagagagaccagttacagactAGCTACAACAATCTGATtgcagagagagaccagttacagaccagttacaacaatctgactgaggagagggaccagttacagaccagttacaacaatctgactgaggagagagaccagttaccgagggagagagacatgttggTTTGGAGAGCTGAGGGAAACGGTTGTCCTGGTGGGTGGAGGAAGTTTGACAGCAGCTGTTACTTCCTCTCCATCGTGTCTAAAACCTGGAAGGAGAGCAGACGGGACTGTCTGAATAGAGGAGGAGACCTGGTCATCATCCAAAGCAGAGAGGAACAGGACTACATAAAAACGTTTATGGTGATGTcctggattggtctgactgatGAAGATAGAGAGGGTCTCTGGACGTGGGTGGACAACACACAGCTAACTACAGCAGAGTACTGGCATCCCGGTGAACCGAAtggtggaagagaggagaactGTGGAATGATTTGGATGAATTATGATGCCTGGAATGACGCCTCGTGCTCTGCAGCGCTCCCCTGGATATGTGAGAAATATGCATATCGTTAGGTTCTAAAAGGACCTAGTAGAACTCACGACGATTAGTCAAACTTTAACCACGTTTATTCACCCATTGGGTCATACAATTGCATAAGACAAAGACATGGTTCCATCAATGGTAGTATATATACACCCCAATTTGGCTGACGTCCTCCTCTCTAAACGTAACTTCCTGCCTAGCAAAAAATATGTAAAGTGATACGGGCAATAAACTATTACTTCTCCTTTAACATGACCTGACCTTCACTAATCCACAGCTCGCCACCATTATCAGTCACTGCAGTCATGTAATATCCTCTACTCAGGACCTCCCAAATCCCCCTGGCTCCTATCCAACCTTCATTGACCCAATGatatacattcctcctacagataccccttaacttctggtgtagaaacCAGATTATGGCACTCCTCATGCATGCATACACGGCCTACCTGAGTGATCTAGTTGAACCGCTCTAGTCAGCAAATTCACCATGTTGTTTGGCCTGtaatgttgtttgtctgtaaatGACAGTCGTCTCTATGAGCTCATTCACAACGATCATGTCACTCTCTGTATCACACCTGCTGTCTCCCTTCCACCACGCCCTGCACAGTGAAGTCATCATTACTTAGCCTGAGCTGACCAAGGACTGTACACAGTGTGACACTTTATTTATACACTGCAATTGAGAaaagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgttgacatt
>XM_036941852.1
CCTGCTTGTGCTACTGCACACTCCTTAGTTACAACAGACCCAGAAAGTTGTAGCTTACATTCTAATAGATAGCCTACAATAGATATATATTTCTGGAATGTTCATTGAAATTGCTGCAGGGTTTTTATTTTAGCTAATCAGACATATGAGGCagacacacagcctacatcatcatGTGGTTCACATTGGTTGAGAGTTCAGAAGAGGGTGAGTAAAGAGAGAAACCTGAAGGGGGGAGGGTAAGCACCAGCTACTTATATTGTTTTTGAAGAATCTGGGGGGAGGAAAGGGGCAGTTACCAAACAATGGATTTTTTAACACTTCTGAAACGTGAGCAAACTGATTTCCTGTCTTGTATTTTGTAGGTACTAGTCCTGGTGAGTCTAATGGTGACAGATGGGAGAACTGTGGCATGCTTTGGACGCAGTTACGAGACCAGGAATGAAAAGACGACTGAGCAACTACTGTGCTGTACATCAGTGGAACGAGGAGGAGAGCCATTGGAAACACCTTCGAGGCAACAGAAAAATAAACCAGGATGAGAAGGAAGAAAACAAGGTTGACAGCCTCCTggttcattgaaatgacgtggaaacaacgttgatacaaccagtttgtgcccagtgggtatcaCATATAGTAAACCCCAGACTGACTGGACGGCTCTCAAGTTGAGAAGGTGGTTGACCATGGAGATGTCTGAGGACATTGTTTATGCCAATGAAGACGTTAGAGGAAAACAAAGTGTTTCAGGGGACCATTTTTATAATAGAGGAGACAACATCTATGAAGACATTTATGAAACTCCAGACACCATCAAGTTTAATGACTTCAGAAACAAGACTGAGGATGTTACCCCAAGGAGCAGACCAGGAGCTAAACTCTCAGAGTCTGAGCAACCAAAGAAGAGACCTTTAAGAGCTGCagcagtgtgtctggggctgtTGAGCgttctcctactggctgggatcataggACTGTACCTCTACTatgacagagtatataacaacTTGACTGAAGACAgggaccagctacagaccagttacaacaatctgattgcagagagagaccagttacagactAGCTACAACAATCTGATtgcagagagagaccagttacagaccagttacaacaatctgactgaggagagggaccagttacagaccagttacaacaatctgactgaggagagagaccagttaccgagggagagagacatgttggTTTGGAGAGCTGAGGGAAACGGTTGTCCTGGTGGGTGGAGGAAGTTTGACAGCAGCTGTTACTTCCTCTCCATCGTGTCTAAAACCTGGAAGGAGAGCAGACGGGACTGTCTGAATAGAGGAGGAGACCTGGTCATCATCCAAAGCAGAGAGGAACAGGACTACATAAAAACGTTTATGGTGATGTcctggattggtctgactgatGAAGATAGAGAGGGTCTCTGGACGTGGGTGGACAACACACAGCTAACTACAGCAGAGTACTGGCATCCCGGTGAACCGAAtggtggaagagaggagaactGTGGAATGATTTGGATGAATTATGATGCCTGGAATGACGCCTCGTGCTCTGCAGCGCTCCCCTGGATATGTGAGAAATATGCATATCGTTAGGTTCTAAAAGGACCTAGTAGAACTCACGACGATTAGTCAAACTTTAACCACGTTTATTCACCCATTGGGTCATACAATTGCATAAGACAAAGACATGGTTCCATCAATGGTAGTATATATACACCCCAATTTGGCTGACGTCCTCCTCTCTAAACGTAACTTCCTGCCTAGCAAAAAATATGTAAAGTGATACGGGCAATAAACTATTACTTCTCCTTTAACATGACCTGACCTTCACTAATCCACAGCTCGCCACCATTATCAGTCACTGCAGTCATGTAATATCCTCTACTCAGGACCTCCCAAATCCCCCTGGCTCCTATCCAACCTTCATTGACCCAATGatatacattcctcctacagataccccttaacttctggtgtagaaacCAGATTATGGCACTCCTCATGCATGCATACACGGCCTACCTGAGTGATCTAGTTGAACCGCTCTAGTCAGCAAATTCACCATGTTGTTTGGCCTGtaatgttgtttgtctgtaaatGACAGTCGTCTCTATGAGCTCATTCACAACGATCATGTCACTCTCTGTATCACACCTGCTGTCTCCCTTCCACCACGCCCTGCACAGTGAAGTCATCATTACTTAGCCTGAGCTGACCAAGGACTGTACACAGTGTGACACTTTATTTATACACTGCAATTGAGAaaagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgttgacatt
>XM_036941850.1
GGACTGGACCTCTACTGTGAGTTCATATGTTACTGTCTGGGATCATAGGACTGTACCTCTACTGTGAGTTCATATGTTACTGTCTGGGATCATAGGACTGTACCTCTACTGTGAGTTCATATGTTACTGTCTGGGATCATAGGACTGTACCTCTACTGTGAGTTCATATGTTACTGTCTGGGAATCATAGGACTGTACCTCTACTGTGAGTTCATATGTTACTGTCTGGGATCATAGGACTGTACCTCTACTACGACTGAGCAACTACTGTGCTGTACATCAGTGGAACGAGGAGGAGAGCCATTGGAAACACCTTCGAGGCAACAGAAAAGTAAATGAATGGCCCAAAATGGAAATGTAAAAGGAAATGGAGGATGAATTTGTTTGTGGCTTTTCCAGATAAACCAGGATGAGAAGGAAGAAAACAAGGTTGACAGCCTCCTggttcattgaaatgacgtggaaacaacgttgatacaaccagtttgtgcccagtgggtatcaCATATAGTAAACCCCAGACTGACTGGACGGCTCTCAAGTTGAGAAGGTGGTTGACCATGGAGATGTCTGAGGACATTGTTTATGCCAATGAAGACGTTAGAGGAAAACAAAGTGTTTCAGGGGACCATTTTTATAATAGAGGAGACAACATCTATGAAGACATTTATGAAACTCCAGACACCATCAAGTTTAATGACTTCAGAAACAAGACTGAGGATGTTACCCCAAGGAGCAGACCAGGAGCTAAACTCTCAGAGTCTGAGCAACCAAAGAAGAGACCTTTAAGAGCTGCagcagtgtgtctggggctgtTGAGCgttctcctactggctgggatcataggACTGTACCTCTACTatgacagagtatataacaacTTGACTGAAGACAgggaccagctacagaccagttacaacaatctgattgcagagagagaccagttacagactAGCTACAACAATCTGATtgcagagagagaccagttacagaccagttacaacaatctgactgaggagagggaccagttacagaccagttacaacaatctgactgaggagagagaccagttaccgagggagagagacatgttggTTTGGAGAGCTGAGGGAAACGGTTGTCCTGGTGGGTGGAGGAAGTTTGACAGCAGCTGTTACTTCCTCTCCATCGTGTCTAAAACCTGGAAGGAGAGCAGACGGGACTGTCTGAATAGAGGAGGAGACCTGGTCATCATCCAAAGCAGAGAGGAACAGGACTACATAAAAACGTTTATGGTGATGTcctggattggtctgactgatGAAGATAGAGAGGGTCTCTGGACGTGGGTGGACAACACACAGCTAACTACAGCAGAGTACTGGCATCCCGGTGAACCGAAtggtggaagagaggagaactGTGGAATGATTTGGATGAATTATGATGCCTGGAATGACGCCTCGTGCTCTGCAGCGCTCCCCTGGATATGTGAGAAATATGCATATCGTTAGGTTCTAAAAGGACCTAGTAGAACTCACGACGATTAGTCAAACTTTAACCACGTTTATTCACCCATTGGGTCATACAATTGCATAAGACAAAGACATGGTTCCATCAATGGTAGTATATATACACCCCAATTTGGCTGACGTCCTCCTCTCTAAACGTAACTTCCTGCCTAGCAAAAAATATGTAAAGTGATACGGGCAATAAACTATTACTTCTCCTTTAACATGACCTGACCTTCACTAATCCACAGCTCGCCACCATTATCAGTCACTGCAGTCATGTAATATCCTCTACTCAGGACCTCCCAAATCCCCCTGGCTCCTATCCAACCTTCATTGACCCAATGatatacattcctcctacagataccccttaacttctggtgtagaaacCAGATTATGGCACTCCTCATGCATGCATACACGGCCTACCTGAGTGATCTAGTTGAACCGCTCTAGTCAGCAAATTCACCATGTTGTTTGGCCTGtaatgttgtttgtctgtaaatGACAGTCGTCTCTATGAGCTCATTCACAACGATCATGTCACTCTCTGTATCACACCTGCTGTCTCCCTTCCACCACGCCCTGCACAGTGAAGTCATCATTACTTAGCCTGAGCTGACCAAGGACTGTACACAGTGTGACACTTTATTTATACACTGCAATTGAGAaaagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgtcgacattgttagccatagagtagtttgttgacattgttagccatagagtagtttgttgacatt
>TU1362937
GGTTTATTTATGCTaattttattattgttattattgttagtatcattattttattttttattgtgttgtgttgtgaaacAGAGGGAAACGGTTGTCCTGGTGGGTGGAGGAAGTTTGACAGCAGCTGTTACTTCCTCTCCATCGTGTCTAAAACCTGGAAGGAGAGCAGACGGGACTGTCTGAATAGAGGAGGAGACCTGGTCATCATCCAAAGCAGAGAGGAACAGGACTACATAAAAACGTTTATGGTGATGTcctggattggtctgactgatGAAGATAGAGAGGGTCTCTGGACGTGGGTGGACAACACACAGCTAACTACAGCAGAGTACTGGCATCCCGGTGAACCGAAtggtggaagagaggagaactGTGGAATGATTTGGATGAATTATGATGCCTGGAATGACGCCTCGTGCTCTGCAGCGCTCCCCTGGATATGTGAGAAATATGCATATCGTTAGGTTCTAAAAGGACCTAGTAGAACTCACGACGATTAGTCAAACTTTAACCACGTTTATTCACCCATTGGGTCATACAATTGCATAAGACAAAGACATGGTTCCATCAATGGTAGTATATATACACCCCAATTTGGCTGACGTCCTCCTCTCTAAACGTAACTTCCTGCCTAGCAAAAAATATGTAAAGTGATACGGGCAATAAACTATTACTTCTCCTTTAACATGACCTGACCTTCACTAATCCACAGCTCGCCACCATTATCAGTCACTGCAGTCATGTAATATCCTCTACTCAGGACCTCCCAAATCCCCCT
>TU1362936
CAGGACTACATAAAAACGTTTATGGTGATGTcctggattggtctgactgatGAAGATAGAGAGGGTCTCTGGACGTGGGTGGACAACACACAGCTAACTACAGCAGAGTACTGGCATCCCGGTGAACCGAAtggtggaagagaggagaactGTGGAATGATTTGGATGAATTATGATGCCTGGAATGACGCCTCGTGCTCTGCAGCGCTCCCCTGGATATGTGAGAAATATGCATATCGTTAGGTTCTAAAAGGACCTAGTAGAACTCACGACGATTAGTCAAACTTTAACCACGTTTATTCACCCATTGGGTCATACAATTGCATAAGACAAAGACATGGTTCCATCAATGGTAGTATATATACACCCCAATTTGGCTGACGTCCTCCTCTCTAAACGTAACTTCCTGCCTAGCAAAAAATATGTAAAGTGATACGGGCAATAAACTATTACTTCTCCTTTAACATGACCTGACCTTCACTAATCCACAGCTCGCCACCATTATCAGTCACTGCAGTCATGTAATATCCTCTACTCAGGACCTCCCAAATCCCCCT

Function

NR:

description
PREDICTED: CD209 antigen-like protein C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941851.1 False 2489 mRNA 0.44 7 62850736 62856280
XM_036941852.1 False 2421 mRNA 0.44 8 62850736 62856280
XM_036941850.1 False 2292 mRNA 0.44 7 62851459 62856280
TU1362937 False 781 lncRNA 0.43 3 62853132 62855795
TU1362936 True 557 lncRNA 0.44 2 62855126 62855795

Neighbor

gene id symbol gene type direction distance location
socs3 socs3 coding upstream 71983 62775224 ~ 62778753 (+)
LOC110487087 cyh1 coding upstream 115021 62607624 ~ 62735715 (+)
LOC118938347 NA coding upstream 124165 62723924 ~ 62726571 (+)
LOC110485308 LOC106601924 coding upstream 245096 62569908 ~ 62605641 (+)
LOC110538848 LOC100136244 coding upstream 283684 62541823 ~ 62567052 (+)
LOC110486094 LOC106601958 coding downstream 107435 62963715 ~ 62968021 (+)
LOC110486092 LOC106601958 coding downstream 120136 62976416 ~ 62980693 (+)
LOC118938099 NA coding downstream 398594 63254874 ~ 63307318 (+)
hid1a LOC104925062 coding downstream 453216 63309496 ~ 63348219 (+)
LOC110487153 LOC106606395 coding downstream 520908 63377188 ~ 63406484 (+)
G1194599 NA non-coding upstream 345 62850165 ~ 62850391 (+)
G1194484 NA non-coding upstream 42309 62808209 ~ 62808427 (+)
G1194479 NA non-coding upstream 50521 62799968 ~ 62800215 (+)
G1194472 NA non-coding upstream 65589 62784405 ~ 62785147 (+)
G1194448 NA non-coding upstream 164202 62684255 ~ 62686534 (+)
G1194606 NA non-coding downstream 7295 62863575 ~ 62867042 (+)
G1194609 NA non-coding downstream 12269 62868549 ~ 62868922 (+)
G1194617 NA non-coding downstream 19839 62876119 ~ 62876933 (+)
G1194626 NA non-coding downstream 29772 62886052 ~ 62886253 (+)
G1194631 NA non-coding downstream 35457 62891737 ~ 62895662 (+)
G1193989 NA other upstream 659690 62189725 ~ 62191046 (+)
G1193964 LOC106606437 other upstream 729309 62118416 ~ 62121427 (+)
G1193742 NA other upstream 1004713 61788988 ~ 61846023 (+)
G1193515 NA other upstream 1327666 61522404 ~ 61523070 (+)
G1194696 LOC106601958 other downstream 107329 62963609 ~ 62979131 (+)
G1194739 NA other downstream 234023 63090303 ~ 63091342 (+)
G1194741 LOC106606381 other downstream 247020 63103300 ~ 63104094 (+)
LOC118936377 LOC106606343 other downstream 829743 63686009 ~ 63692526 (+)
LOC110487456 LOC106593034 other downstream 844491 63700749 ~ 63714263 (+)

Expression

LOC110485137(LOC106606428) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110485137(LOC106606428) Expression in each Bioproject

Bar chart with 21 bars.
LOC110485137(LOC106606428) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network